Wall clock time and date at job start Tue Mar 31 2020 00:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47284 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47270 * 239.99816 * 3 2 1 6 6 H 1.48499 * 109.47189 * 119.99975 * 3 2 1 7 7 C 1.38816 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99733 * 208.08962 * 7 2 1 9 9 N 1.36931 * 120.00175 * 28.08726 * 7 2 1 10 10 C 1.46502 * 119.99760 * 33.86719 * 9 7 2 11 11 N 1.46500 * 109.47295 * 89.99699 * 10 9 7 12 12 C 1.33812 * 133.11514 * 90.00148 * 11 10 9 13 13 O 1.21280 * 133.20059 * 0.41360 * 12 11 10 14 14 C 1.49905 * 93.59010 * 180.39407 * 12 11 10 15 15 H 1.09004 * 114.45028 * 114.18979 * 14 12 11 16 16 C 1.53242 * 113.54913 * 246.70132 * 14 12 11 17 17 C 1.52792 * 109.26105 * 172.45075 * 16 14 12 18 18 C 1.52192 * 110.64960 * 264.79854 * 17 16 14 19 19 C 1.52214 * 111.44682 * 63.53602 * 18 17 16 20 20 C 1.52734 * 110.72500 * 296.21439 * 19 18 17 21 21 C 1.45760 * 133.11566 * 269.64581 * 11 10 9 22 22 H 1.09005 * 113.80378 * 64.47967 * 21 11 10 23 23 C 1.46495 * 120.00194 * 213.86391 * 9 7 2 24 24 C 1.52997 * 117.50104 * 7.23395 * 23 9 7 25 25 C 1.53003 * 117.49681 * 298.57465 * 23 9 7 26 26 H 0.96994 * 120.00520 * 184.66070 * 1 2 3 27 27 H 1.08994 * 109.46913 * 209.99996 * 10 9 7 28 28 H 1.09001 * 109.47091 * 329.99632 * 10 9 7 29 29 H 1.09002 * 109.50786 * 292.38056 * 16 14 12 30 30 H 1.08997 * 109.50657 * 52.51492 * 16 14 12 31 31 H 1.08998 * 109.23690 * 25.09415 * 17 16 14 32 32 H 1.08990 * 109.23994 * 144.49048 * 17 16 14 33 33 H 1.09000 * 109.08816 * 184.04004 * 18 17 16 34 34 H 1.09005 * 109.08831 * 303.09178 * 18 17 16 35 35 H 1.09005 * 109.22626 * 56.53230 * 19 18 17 36 36 H 1.08996 * 109.23400 * 175.93802 * 19 18 17 37 37 H 1.08994 * 109.49782 * 215.38956 * 20 19 18 38 38 H 1.08994 * 109.49767 * 335.45876 * 20 19 18 39 39 H 1.08998 * 115.55285 * 152.91117 * 23 9 7 40 40 H 1.09004 * 117.49420 * 0.02562 * 24 23 9 41 41 H 1.08997 * 117.49996 * 145.01579 * 24 23 9 42 42 H 1.09002 * 117.49922 * 214.97588 * 25 23 9 43 43 H 1.08996 * 117.50076 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9948 -1.2571 0.4410 9 7 1.4465 -2.3185 -0.5573 10 6 0.5746 -2.1918 -1.7278 11 7 1.3789 -2.2874 -2.9485 12 6 1.7523 -3.3153 -3.7195 13 8 1.5448 -4.5092 -3.6692 14 6 2.5213 -2.4463 -4.6685 15 1 3.5974 -2.6204 -4.6686 16 6 1.9123 -2.3855 -6.0735 17 6 2.6552 -1.3368 -6.8998 18 6 1.9267 -0.0014 -6.8523 19 6 1.8907 0.5629 -5.4391 20 6 1.0907 -0.3505 -4.5126 21 6 2.0606 -1.2970 -3.7725 22 1 2.8749 -0.7841 -3.2606 23 6 1.7152 -3.6394 0.0163 24 6 2.4920 -3.6930 1.3334 25 6 3.1670 -4.1222 0.0283 26 1 -0.4850 -0.8372 0.0682 27 1 -0.1662 -2.9912 -1.7172 28 1 0.0683 -1.2269 -1.7009 29 1 2.0058 -3.3599 -6.5532 30 1 0.8592 -2.1136 -6.0022 31 1 3.6615 -1.2114 -6.5001 32 1 2.7197 -1.6743 -7.9342 33 1 2.4369 0.7063 -7.5058 34 1 0.9050 -0.1399 -7.2060 35 1 2.9096 0.6529 -5.0624 36 1 1.4267 1.5490 -5.4580 37 1 0.5486 0.2537 -3.7853 38 1 0.3827 -0.9348 -5.1002 39 1 0.9376 -4.3870 -0.1401 40 1 2.8027 -2.7452 1.7733 41 1 2.2255 -4.4759 2.0434 42 1 3.3444 -5.1875 -0.1197 43 1 3.9221 -3.4573 -0.3910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749943404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:32 Heat of formation + Delta-G solvation = 20.569055 kcal Electronic energy + Delta-G solvation = -23328.344557 eV Core-core repulsion = 20182.025340 eV Total energy + Delta-G solvation = -3146.319217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51115 -39.02589 -38.42334 -36.74069 -35.57871 -33.02545 -32.45055 -30.56253 -28.07415 -26.31771 -25.23009 -24.21693 -23.17476 -21.96105 -21.70059 -21.46342 -19.24592 -18.69374 -17.96693 -17.90134 -17.30183 -16.79825 -16.04160 -15.88401 -15.50535 -15.07183 -14.97415 -14.72740 -14.20632 -13.85017 -13.76482 -13.57691 -13.53738 -13.26457 -12.91610 -12.75651 -12.40419 -12.38447 -11.96896 -11.88678 -11.87710 -11.66406 -11.59690 -11.51178 -11.29330 -11.20488 -11.04091 -10.64497 -10.43379 -9.76794 -8.96713 -8.31583 -5.59781 1.53047 1.57819 1.60909 1.81343 2.23456 2.57513 3.01103 3.02793 3.19964 3.36789 3.60600 3.67043 4.04270 4.05223 4.09428 4.16717 4.20329 4.28283 4.31055 4.32260 4.37313 4.45765 4.69747 4.73154 4.74165 4.78753 4.83198 4.87437 5.06669 5.09688 5.16816 5.21962 5.32360 5.33580 5.36045 5.40153 5.51725 5.59507 5.77619 5.79773 5.98611 6.27229 6.91618 7.33854 7.61648 8.05627 8.85127 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.008038 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.967068 B = 3482.563587 C = 4801.476912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.049 4.049 3 Si 1.100 2.900 4 H -0.288 1.288 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.354 4.354 8 H 0.042 0.958 9 N -0.565 5.565 10 C 0.359 3.641 11 N -0.615 5.615 12 C 0.505 3.495 13 O -0.578 6.578 14 C -0.126 4.126 15 H 0.129 0.871 16 C -0.097 4.097 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.118 4.118 21 C 0.133 3.867 22 H 0.083 0.917 23 C 0.088 3.912 24 C -0.172 4.172 25 C -0.200 4.200 26 H 0.256 0.744 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 1.095 -13.064 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.248 4.248 3 Si 0.924 3.076 4 H -0.214 1.214 5 H -0.196 1.196 6 H -0.208 1.208 7 C -0.483 4.483 8 H 0.060 0.940 9 N -0.285 5.285 10 C 0.152 3.848 11 N -0.351 5.351 12 C 0.292 3.708 13 O -0.458 6.458 14 C -0.147 4.147 15 H 0.147 0.853 16 C -0.135 4.135 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.156 4.156 21 C 0.029 3.971 22 H 0.101 0.899 23 C -0.020 4.020 24 C -0.210 4.210 25 C -0.241 4.241 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.659 2.174 -12.841 13.832 hybrid contribution -0.006 -1.958 1.012 2.204 sum 4.653 0.216 -11.829 12.713 Atomic orbital electron populations 1.70937 1.07509 1.29327 1.47885 1.27044 0.96232 1.04268 0.97234 0.83074 0.74327 0.72563 0.77636 1.21370 1.19625 1.20808 1.19783 0.99135 0.89640 1.39756 0.94024 1.44147 1.55782 1.01590 1.26988 1.20865 0.87481 1.00849 0.75625 1.51646 1.50087 1.08780 1.24584 1.22217 0.79281 0.85614 0.83715 1.90587 1.62853 1.15515 1.76815 1.23328 1.02122 0.92573 0.96689 0.85328 1.21502 1.00264 1.00836 0.90858 1.21350 0.99364 0.93841 1.00188 1.21305 1.01194 0.96887 0.95687 1.21290 1.00336 0.98226 0.95111 1.22054 0.97932 0.97493 0.98156 1.22573 0.94287 0.91851 0.88402 0.89921 1.21387 0.92790 0.88939 0.98848 1.23042 1.04890 1.02252 0.90843 1.23193 0.98352 1.00196 1.02343 0.93417 0.93484 0.89235 0.90821 0.91149 0.91129 0.89864 0.90150 0.91836 0.91572 0.91133 0.93522 0.90311 0.89422 0.90127 0.87557 0.88603 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.51 12.20 21.65 0.26 -51.24 16 2 C -0.05 -2.57 4.81 84.86 0.41 -2.16 16 3 Si 1.10 47.43 30.00 68.60 2.06 49.49 16 4 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.35 -18.74 8.29 84.04 0.70 -18.05 16 8 H 0.04 2.30 6.98 -2.91 -0.02 2.28 16 9 N -0.57 -28.12 2.84 -689.71 -1.96 -30.08 16 10 C 0.36 16.97 6.52 170.96 1.11 18.09 16 11 N -0.62 -25.44 3.30 -855.76 -2.82 -28.26 16 12 C 0.50 20.34 8.87 84.43 0.75 21.09 16 13 O -0.58 -27.28 18.03 -3.03 -0.05 -27.33 16 14 C -0.13 -3.67 3.82 -11.75 -0.04 -3.71 16 15 H 0.13 3.34 8.10 -2.38 -0.02 3.32 16 16 C -0.10 -2.17 5.08 30.61 0.16 -2.01 16 17 C -0.11 -1.79 5.68 30.26 0.17 -1.62 16 18 C -0.11 -1.83 5.46 30.07 0.16 -1.66 16 19 C -0.11 -2.37 5.67 30.25 0.17 -2.20 16 20 C -0.12 -3.38 5.38 30.98 0.17 -3.21 16 21 C 0.13 4.44 4.32 42.43 0.18 4.62 16 22 H 0.08 2.98 8.09 -2.38 -0.02 2.96 16 23 C 0.09 4.01 6.58 44.99 0.30 4.31 16 24 C -0.17 -7.00 9.77 30.62 0.30 -6.70 16 25 C -0.20 -8.21 10.30 30.62 0.32 -7.90 16 26 H 0.26 14.80 7.17 -92.71 -0.66 14.13 16 27 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 28 H 0.09 4.58 5.31 -2.39 -0.01 4.56 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.68 5.35 -2.39 -0.01 1.67 16 31 H 0.07 1.11 7.72 -2.39 -0.02 1.10 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.00 8.02 -2.38 -0.02 0.98 16 35 H 0.07 1.41 7.70 -2.38 -0.02 1.39 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 2.14 5.36 -2.39 -0.01 2.13 16 39 H 0.09 3.91 8.13 -2.39 -0.02 3.89 16 40 H 0.08 3.62 6.61 -2.38 -0.02 3.60 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -64.00 335.97 3.43 -60.57 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.09 Total: 27.96 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.85 Total: -1.11 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.51 Total: -109.57 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.05 Total: -27.33 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.06 Total: 49.49 kcal Total: -64.00 3.43 -60.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749943404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.137 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds