Wall clock time and date at job start Tue Mar 31 2020 00:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48504 * 109.46717 * 269.99800 * 3 2 1 5 5 H 1.48493 * 109.47104 * 29.99757 * 3 2 1 6 6 H 1.48504 * 109.46835 * 150.00008 * 3 2 1 7 7 C 1.37877 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00017 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47144 * 175.16289 * 9 7 2 11 11 C 1.46894 * 110.99883 * 295.43178 * 10 9 7 12 12 C 1.53243 * 109.33776 * 187.25519 * 11 10 9 13 13 N 1.47083 * 108.51890 * 306.17243 * 12 11 10 14 14 C 1.34782 * 120.88014 * 231.18780 * 13 12 11 15 15 O 1.21607 * 120.00001 * 184.99268 * 14 13 12 16 16 C 1.47101 * 119.99826 * 4.99560 * 14 13 12 17 17 C 1.32995 * 120.00019 * 174.87128 * 16 14 13 18 18 C 1.51448 * 126.34223 * 180.02562 * 17 16 14 19 19 C 1.54285 * 106.88446 * 180.35764 * 18 17 16 20 20 C 1.55083 * 103.70028 * 23.13554 * 19 18 17 21 21 C 1.51844 * 126.34164 * 0.02562 * 17 16 14 22 22 C 1.47077 * 118.24222 * 51.45399 * 13 12 11 23 23 C 1.46899 * 110.99891 * 59.73421 * 10 9 7 24 24 H 0.97006 * 119.99843 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46929 * 55.16037 * 9 7 2 26 26 H 1.08999 * 109.46754 * 295.16760 * 9 7 2 27 27 H 1.08998 * 109.49620 * 67.29481 * 11 10 9 28 28 H 1.08998 * 109.51662 * 307.22563 * 11 10 9 29 29 H 1.08994 * 109.63052 * 186.46780 * 12 11 10 30 30 H 1.08995 * 109.63058 * 65.87848 * 12 11 10 31 31 H 1.08003 * 120.00401 * 354.87004 * 16 14 13 32 32 H 1.08999 * 109.98019 * 299.72429 * 18 17 16 33 33 H 1.08997 * 109.98527 * 60.98783 * 18 17 16 34 34 H 1.08997 * 110.56816 * 141.70798 * 19 18 17 35 35 H 1.08993 * 110.56646 * 264.58064 * 19 18 17 36 36 H 1.09003 * 110.82474 * 204.69715 * 20 19 18 37 37 H 1.09000 * 110.84178 * 81.12234 * 20 19 18 38 38 H 1.08999 * 110.44157 * 274.92653 * 21 17 16 39 39 H 1.09005 * 110.43902 * 37.32553 * 21 17 16 40 40 H 1.09002 * 109.62432 * 68.25360 * 22 13 12 41 41 H 1.08996 * 109.63010 * 188.83211 * 22 13 12 42 42 H 1.09000 * 109.49477 * 292.70913 * 23 10 9 43 43 H 1.09008 * 109.49073 * 52.78576 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2015 -3.6133 -0.1156 11 6 2.8991 -3.5775 -1.4079 12 6 3.7417 -4.8478 -1.5649 13 7 4.6162 -4.9767 -0.3893 14 6 5.9419 -5.1741 -0.5316 15 8 6.6361 -5.3690 0.4476 16 6 6.5489 -5.1537 -1.8714 17 6 7.8689 -5.2464 -2.0048 18 6 8.6419 -5.2398 -3.3071 19 6 10.1346 -5.3794 -2.9429 20 6 10.1103 -6.0463 -1.5430 21 6 8.8800 -5.3784 -0.8797 22 6 4.0049 -4.8904 0.9456 23 6 3.1527 -3.6126 1.0037 24 1 -0.4850 0.8401 0.0004 25 1 0.5613 -2.5205 -0.8432 26 1 0.6906 -2.5951 0.9305 27 1 3.5486 -2.7031 -1.4465 28 1 2.1683 -3.5238 -2.2148 29 1 4.3493 -4.7750 -2.4669 30 1 3.0863 -5.7162 -1.6306 31 1 5.9227 -5.0635 -2.7467 32 1 8.3303 -6.0786 -3.9295 33 1 8.4736 -4.3014 -3.8355 34 1 10.6464 -6.0179 -3.6629 35 1 10.6097 -4.3998 -2.8924 36 1 11.0208 -5.8179 -0.9890 37 1 9.9675 -7.1235 -1.6290 38 1 9.1446 -4.3961 -0.4885 39 1 8.4841 -6.0100 -0.0844 40 1 3.3742 -5.7628 1.1165 41 1 4.7864 -4.8457 1.7040 42 1 3.7987 -2.7376 0.9316 43 1 2.6055 -3.5845 1.9461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827484781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:57 Heat of formation + Delta-G solvation = -19.680721 kcal Electronic energy + Delta-G solvation = -21947.601327 eV Core-core repulsion = 18799.536749 eV Total energy + Delta-G solvation = -3148.064578 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97602 -38.27457 -37.16351 -34.38556 -32.40718 -31.95484 -30.49759 -28.94843 -28.22244 -25.90129 -24.94350 -23.09210 -22.39180 -21.09423 -20.67233 -19.11972 -17.91149 -17.10019 -16.34187 -15.91905 -15.60313 -14.96047 -14.81137 -14.61459 -14.35938 -13.77374 -13.69156 -13.47896 -13.14882 -12.82274 -12.54233 -12.39746 -11.98443 -11.82877 -11.41389 -11.38239 -11.17233 -11.13416 -11.03589 -10.89839 -10.79718 -10.63579 -10.60086 -10.24172 -9.92501 -9.67818 -9.32899 -9.14873 -8.47942 -8.30711 -7.26217 -6.07818 -4.17290 1.42403 3.23989 3.25787 3.31386 3.34907 3.48193 4.26288 4.36785 4.50476 4.76167 4.79939 4.93800 5.05683 5.22440 5.23519 5.29989 5.39751 5.43572 5.52043 5.56728 5.60149 5.66680 5.77403 5.80475 5.85733 5.92792 6.00725 6.06359 6.12673 6.15770 6.39962 6.42126 6.52072 6.61663 6.72419 6.84470 7.19585 7.46552 7.70057 7.84696 7.96567 8.17638 8.23466 8.44801 8.92759 9.50214 10.97249 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.003981 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.587572 B = 7031.433501 C = 7617.381492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.541 5.541 11 C 0.049 3.951 12 C 0.108 3.892 13 N -0.603 5.603 14 C 0.550 3.450 15 O -0.554 6.554 16 C -0.219 4.219 17 C -0.035 4.035 18 C -0.103 4.103 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.105 4.105 22 C 0.116 3.884 23 C 0.050 3.950 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.004 -11.754 -6.414 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.265 5.265 11 C -0.080 4.080 12 C -0.015 4.015 13 N -0.335 5.335 14 C 0.341 3.659 15 O -0.436 6.436 16 C -0.240 4.240 17 C -0.037 4.037 18 C -0.140 4.140 19 C -0.163 4.163 20 C -0.165 4.165 21 C -0.142 4.142 22 C -0.006 4.006 23 C -0.079 4.079 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.901 -12.170 -5.869 20.114 hybrid contribution 0.615 1.977 -0.226 2.083 sum 15.516 -10.192 -6.095 19.539 Atomic orbital electron populations 1.69942 1.05995 1.26904 1.50004 1.24954 0.94760 0.99147 0.94812 0.86655 0.79964 0.83622 0.78170 1.20612 1.21046 1.19966 1.21746 0.93294 0.92120 1.51915 0.92591 1.19766 0.90699 0.85330 0.97989 1.62482 1.16646 1.46946 1.00433 1.22236 0.96800 0.95042 0.93972 1.22053 0.92599 0.99483 0.87327 1.48063 1.06574 1.70679 1.08175 1.18417 0.81574 0.76593 0.89330 1.90678 1.61106 1.50859 1.40908 1.22031 0.94644 1.10313 0.97009 1.22895 0.93585 0.90218 0.96967 1.21342 0.94719 1.02762 0.95133 1.22403 0.95446 1.01067 0.97335 1.22604 0.98266 0.99877 0.95729 1.21761 0.92971 1.02251 0.97215 1.21907 0.96341 0.98733 0.83649 1.22337 0.94494 0.95201 0.95868 0.92750 0.94662 0.95211 0.93923 0.90384 0.90057 0.91095 0.85103 0.90090 0.90070 0.91300 0.91282 0.91235 0.91375 0.90019 0.88030 0.91452 0.89584 0.93903 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.55 -14.93 7.76 -34.44 -0.27 -15.20 16 8 H 0.06 1.53 5.88 -52.49 -0.31 1.22 16 9 C 0.19 4.70 5.11 -4.97 -0.03 4.67 16 10 N -0.54 -11.20 4.83 -235.47 -1.14 -12.34 16 11 C 0.05 0.90 5.24 -3.70 -0.02 0.88 16 12 C 0.11 1.57 6.52 -3.60 -0.02 1.55 16 13 N -0.60 -9.78 3.00 -173.58 -0.52 -10.30 16 14 C 0.55 8.97 7.64 -12.66 -0.10 8.87 16 15 O -0.55 -10.28 13.21 5.27 0.07 -10.21 16 16 C -0.22 -2.87 9.27 -37.81 -0.35 -3.22 16 17 C -0.03 -0.41 6.15 -100.23 -0.62 -1.03 16 18 C -0.10 -0.89 6.61 -26.84 -0.18 -1.07 16 19 C -0.12 -0.97 6.88 -24.96 -0.17 -1.14 16 20 C -0.13 -1.13 6.95 -24.62 -0.17 -1.30 16 21 C -0.11 -1.26 5.50 -26.31 -0.14 -1.40 16 22 C 0.12 1.95 6.61 -3.37 -0.02 1.93 16 23 C 0.05 0.98 5.18 -3.47 -0.02 0.96 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.87 7.09 -51.93 -0.37 0.51 16 28 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 29 H 0.08 0.97 5.37 -51.93 -0.28 0.69 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.13 1.43 5.91 -52.48 -0.31 1.12 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.10 1.44 6.13 -51.93 -0.32 1.12 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 42 H 0.04 0.94 6.63 -51.93 -0.34 0.59 16 43 H 0.08 1.49 8.11 -51.92 -0.42 1.07 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -30.43 334.13 -9.96 -40.39 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.92 Total: -0.05 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.20 Total: -3.77 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.92 Total: -47.73 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.43 -9.96 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.711 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds