Wall clock time and date at job start Tue Mar 31 2020 00:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48504 * 109.46717 * 269.99800 * 3 2 1 5 5 H 1.48493 * 109.47104 * 29.99757 * 3 2 1 6 6 H 1.48504 * 109.46835 * 150.00008 * 3 2 1 7 7 C 1.37877 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00017 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47144 * 175.16289 * 9 7 2 11 11 C 1.46894 * 110.99883 * 295.43178 * 10 9 7 12 12 C 1.53243 * 109.33776 * 187.25519 * 11 10 9 13 13 N 1.47083 * 108.51890 * 306.17243 * 12 11 10 14 14 C 1.34782 * 120.88014 * 231.18780 * 13 12 11 15 15 O 1.21607 * 120.00001 * 184.99268 * 14 13 12 16 16 C 1.47101 * 119.99826 * 4.99560 * 14 13 12 17 17 C 1.32995 * 120.00019 * 174.87128 * 16 14 13 18 18 C 1.51448 * 126.34223 * 180.02562 * 17 16 14 19 19 C 1.54285 * 106.88446 * 180.35764 * 18 17 16 20 20 C 1.55083 * 103.70028 * 23.13554 * 19 18 17 21 21 C 1.51844 * 126.34164 * 0.02562 * 17 16 14 22 22 C 1.47077 * 118.24222 * 51.45399 * 13 12 11 23 23 C 1.46899 * 110.99891 * 59.73421 * 10 9 7 24 24 H 0.97006 * 119.99843 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46929 * 55.16037 * 9 7 2 26 26 H 1.08999 * 109.46754 * 295.16760 * 9 7 2 27 27 H 1.08998 * 109.49620 * 67.29481 * 11 10 9 28 28 H 1.08998 * 109.51662 * 307.22563 * 11 10 9 29 29 H 1.08994 * 109.63052 * 186.46780 * 12 11 10 30 30 H 1.08995 * 109.63058 * 65.87848 * 12 11 10 31 31 H 1.08003 * 120.00401 * 354.87004 * 16 14 13 32 32 H 1.08999 * 109.98019 * 299.72429 * 18 17 16 33 33 H 1.08997 * 109.98527 * 60.98783 * 18 17 16 34 34 H 1.08997 * 110.56816 * 141.70798 * 19 18 17 35 35 H 1.08993 * 110.56646 * 264.58064 * 19 18 17 36 36 H 1.09003 * 110.82474 * 204.69715 * 20 19 18 37 37 H 1.09000 * 110.84178 * 81.12234 * 20 19 18 38 38 H 1.08999 * 110.44157 * 274.92653 * 21 17 16 39 39 H 1.09005 * 110.43902 * 37.32553 * 21 17 16 40 40 H 1.09002 * 109.62432 * 68.25360 * 22 13 12 41 41 H 1.08996 * 109.63010 * 188.83211 * 22 13 12 42 42 H 1.09000 * 109.49477 * 292.70913 * 23 10 9 43 43 H 1.09008 * 109.49073 * 52.78576 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2015 -3.6133 -0.1156 11 6 2.8991 -3.5775 -1.4079 12 6 3.7417 -4.8478 -1.5649 13 7 4.6162 -4.9767 -0.3893 14 6 5.9419 -5.1741 -0.5316 15 8 6.6361 -5.3690 0.4476 16 6 6.5489 -5.1537 -1.8714 17 6 7.8689 -5.2464 -2.0048 18 6 8.6419 -5.2398 -3.3071 19 6 10.1346 -5.3794 -2.9429 20 6 10.1103 -6.0463 -1.5430 21 6 8.8800 -5.3784 -0.8797 22 6 4.0049 -4.8904 0.9456 23 6 3.1527 -3.6126 1.0037 24 1 -0.4850 0.8401 0.0004 25 1 0.5613 -2.5205 -0.8432 26 1 0.6906 -2.5951 0.9305 27 1 3.5486 -2.7031 -1.4465 28 1 2.1683 -3.5238 -2.2148 29 1 4.3493 -4.7750 -2.4669 30 1 3.0863 -5.7162 -1.6306 31 1 5.9227 -5.0635 -2.7467 32 1 8.3303 -6.0786 -3.9295 33 1 8.4736 -4.3014 -3.8355 34 1 10.6464 -6.0179 -3.6629 35 1 10.6097 -4.3998 -2.8924 36 1 11.0208 -5.8179 -0.9890 37 1 9.9675 -7.1235 -1.6290 38 1 9.1446 -4.3961 -0.4885 39 1 8.4841 -6.0100 -0.0844 40 1 3.3742 -5.7628 1.1165 41 1 4.7864 -4.8457 1.7040 42 1 3.7987 -2.7376 0.9316 43 1 2.6055 -3.5845 1.9461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827484781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:57 Heat of formation + Delta-G solvation = -38.392094 kcal Electronic energy + Delta-G solvation = -21948.412713 eV Core-core repulsion = 18799.536749 eV Total energy + Delta-G solvation = -3148.875964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23941 -39.42133 -38.39796 -35.99799 -34.33863 -33.04736 -31.81174 -29.92875 -29.70345 -27.43641 -26.26870 -24.49986 -24.09893 -22.26703 -21.67208 -20.44519 -19.07170 -18.47881 -18.17268 -16.93897 -16.78445 -16.51353 -16.14796 -16.01287 -15.65403 -15.49103 -15.09408 -14.69927 -14.37364 -14.10920 -13.72016 -13.62973 -13.33050 -13.17649 -12.93715 -12.90266 -12.55727 -12.48089 -12.30563 -12.19182 -12.03341 -12.02312 -11.83472 -11.73343 -11.57769 -11.46973 -10.64217 -10.54653 -10.15998 -9.63801 -9.05782 -8.19254 -6.38571 0.40705 1.32923 1.34548 1.44430 2.02759 2.30169 2.33926 3.05807 3.28494 3.38946 3.73920 3.83075 4.06917 4.11714 4.13386 4.18899 4.34838 4.38362 4.43549 4.50127 4.54948 4.64009 4.72653 4.76358 4.88357 4.94475 5.00317 5.03061 5.07829 5.12358 5.18068 5.20085 5.23368 5.30169 5.42057 5.46949 5.50489 5.63166 5.71112 5.98456 6.16675 6.43877 6.50751 6.81689 7.19943 7.33093 8.83108 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.003981 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.587572 B = 7031.433501 C = 7617.381492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.559 4.559 8 H 0.049 0.951 9 C 0.201 3.799 10 N -0.537 5.537 11 C 0.049 3.951 12 C 0.119 3.881 13 N -0.610 5.610 14 C 0.542 3.458 15 O -0.586 6.586 16 C -0.239 4.239 17 C -0.027 4.027 18 C -0.100 4.100 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.113 4.113 22 C 0.127 3.873 23 C 0.057 3.943 24 H 0.266 0.734 25 H 0.015 0.985 26 H 0.005 0.995 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.014 0.986 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.858 -12.341 -8.440 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.597 4.597 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.261 5.261 11 C -0.081 4.081 12 C -0.004 4.004 13 N -0.341 5.341 14 C 0.335 3.665 15 O -0.469 6.469 16 C -0.259 4.259 17 C -0.029 4.029 18 C -0.137 4.137 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.150 4.150 22 C 0.004 3.996 23 C -0.073 4.073 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.036 0.964 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.174 0.826 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.032 0.968 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.762 -12.770 -7.913 22.509 hybrid contribution 0.081 2.127 0.449 2.176 sum 16.843 -10.643 -7.464 21.276 Atomic orbital electron populations 1.70046 1.07364 1.27929 1.50848 1.25742 0.95579 1.02579 0.94476 0.85638 0.78504 0.79511 0.78531 1.19589 1.20398 1.19994 1.21942 0.93057 0.93202 1.51547 0.93257 1.19431 0.91073 0.86315 0.95753 1.62423 1.16954 1.44574 1.02107 1.22320 0.96773 0.96354 0.92605 1.22103 0.92524 0.97750 0.87975 1.48178 1.07028 1.70767 1.08163 1.19035 0.81251 0.75749 0.90461 1.90670 1.61641 1.52285 1.42304 1.22049 0.95448 1.12588 0.95820 1.23295 0.93376 0.87638 0.98574 1.21437 0.94642 1.04124 0.93484 1.22428 0.95095 1.01591 0.96726 1.22592 0.96975 0.99976 0.96427 1.21776 0.94723 1.01423 0.97076 1.21710 0.95887 0.97500 0.84535 1.22281 0.93923 0.95705 0.95355 0.92479 0.96650 0.97670 0.96408 0.89903 0.86661 0.89322 0.82631 0.88153 0.88905 0.89166 0.90952 0.90381 0.90889 0.91134 0.90754 0.89881 0.89988 0.96790 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 13.29 21.45 0.28 -54.01 16 2 C 0.02 0.91 5.46 84.65 0.46 1.37 16 3 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.56 -30.92 7.76 25.60 0.20 -30.72 16 8 H 0.05 2.76 5.88 -2.92 -0.02 2.74 16 9 C 0.20 10.39 5.11 85.56 0.44 10.83 16 10 N -0.54 -22.54 4.83 -898.89 -4.34 -26.88 16 11 C 0.05 1.76 5.24 86.39 0.45 2.21 16 12 C 0.12 3.20 6.52 86.35 0.56 3.76 16 13 N -0.61 -19.19 3.00 -821.34 -2.47 -21.66 16 14 C 0.54 17.30 7.64 86.57 0.66 17.97 16 15 O -0.59 -21.99 13.21 -4.05 -0.05 -22.05 16 16 C -0.24 -5.78 9.27 23.43 0.22 -5.56 16 17 C -0.03 -0.58 6.15 -17.01 -0.10 -0.68 16 18 C -0.10 -1.38 6.61 30.52 0.20 -1.18 16 19 C -0.12 -1.47 6.88 31.74 0.22 -1.25 16 20 C -0.12 -1.92 6.95 31.96 0.22 -1.70 16 21 C -0.11 -2.63 5.50 30.87 0.17 -2.46 16 22 C 0.13 4.24 6.61 86.50 0.57 4.81 16 23 C 0.06 2.26 5.18 86.54 0.45 2.71 16 24 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 25 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 26 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.02 0.73 7.09 -2.39 -0.02 0.71 16 28 H 0.08 2.89 8.06 -2.39 -0.02 2.87 16 29 H 0.12 2.35 5.37 -2.39 -0.01 2.34 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.16 2.86 5.91 -2.91 -0.02 2.84 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.15 6.13 -2.38 -0.01 2.13 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.08 2.82 7.09 -2.39 -0.02 2.81 16 42 H 0.01 0.63 6.63 -2.39 -0.02 0.61 16 43 H 0.07 2.94 8.11 -2.38 -0.02 2.92 16 Total: -1.00 -67.33 334.13 1.16 -66.17 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.99 Total: 12.23 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.72 Total: 0.11 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -6.52 Total: -102.56 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -67.33 1.16 -66.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.776 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds