Wall clock time and date at job start Tue Mar 31 2020 00:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 11 16 16 C 1.48042 * 125.65223 * 359.69582 * 15 13 12 17 17 C 1.53687 * 103.48364 * 156.61491 * 16 15 13 18 18 H 1.09000 * 108.27124 * 285.75913 * 17 16 15 19 19 C 1.50032 * 114.88671 * 164.05274 * 17 16 15 20 20 C 1.49615 * 113.24101 * 281.56119 * 19 17 16 21 21 C 1.29193 * 123.39108 * 347.39335 * 20 19 17 22 22 C 1.49092 * 124.68348 * 1.94310 * 21 20 19 23 23 C 1.53165 * 112.89405 * 342.21839 * 22 21 20 24 24 H 1.09005 * 112.88907 * 273.78525 * 23 22 21 25 25 C 1.47284 * 125.64661 * 179.97438 * 15 13 12 26 26 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 29 29 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 30 30 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 34 34 H 1.09005 * 110.59626 * 275.22711 * 16 15 13 35 35 H 1.08991 * 110.60202 * 38.17316 * 16 15 13 36 36 H 1.09000 * 108.74251 * 160.58069 * 19 17 16 37 37 H 1.09006 * 108.71812 * 42.52174 * 19 17 16 38 38 H 1.08003 * 118.30683 * 167.41183 * 20 19 17 39 39 H 1.08006 * 117.66195 * 181.92145 * 21 20 19 40 40 H 1.08999 * 108.80216 * 221.33706 * 22 21 20 41 41 H 1.08999 * 108.79838 * 103.09337 * 22 21 20 42 42 H 1.08996 * 110.01790 * 296.83735 * 25 15 13 43 43 H 1.09002 * 110.00877 * 58.21107 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1551 -3.3397 0.0038 15 7 7.8143 -5.5345 0.0083 16 6 6.9678 -6.7490 0.0148 17 6 7.8874 -7.8300 -0.5749 18 1 7.9720 -7.6585 -1.6480 19 6 7.4302 -9.2407 -0.3474 20 6 7.7235 -9.7413 1.0316 21 6 8.5098 -9.1328 1.8567 22 6 9.1976 -7.8401 1.5763 23 6 9.2437 -7.5013 0.0833 24 1 10.0981 -7.9467 -0.4264 25 6 9.2288 -5.9448 0.0141 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6795 -0.8895 29 1 3.6587 -3.1493 -0.8920 30 1 3.6579 -3.1512 0.8880 31 1 5.9150 -2.1234 0.8891 32 1 5.9149 -2.1217 -0.8909 33 1 5.4096 -4.7549 -0.0021 34 1 6.6736 -7.0059 1.0325 35 1 6.0897 -6.6077 -0.6152 36 1 7.9264 -9.8902 -1.0685 37 1 6.3545 -9.2914 -0.5167 38 1 7.2539 -10.6589 1.3541 39 1 8.6808 -9.5933 2.8185 40 1 10.2180 -7.8957 1.9554 41 1 8.6731 -7.0420 2.1015 42 1 9.7189 -5.6072 -0.8991 43 1 9.7345 -5.5281 0.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868209874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:14 Heat of formation + Delta-G solvation = -24.898480 kcal Electronic energy + Delta-G solvation = -21404.542494 eV Core-core repulsion = 18256.251657 eV Total energy + Delta-G solvation = -3148.290837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93710 -39.02921 -35.73077 -35.21540 -33.31365 -32.12718 -31.68374 -30.80391 -27.75908 -27.11344 -25.11751 -23.05339 -22.34437 -21.32899 -20.56887 -19.66371 -18.10156 -17.53477 -16.80719 -16.71410 -15.87900 -15.67770 -14.99390 -14.63175 -14.30103 -14.20111 -13.99583 -13.74204 -13.63343 -12.98374 -12.94994 -12.66281 -12.51860 -12.19086 -12.12091 -11.91409 -11.83902 -11.22585 -11.03296 -10.87483 -10.75697 -10.45999 -10.24112 -9.98717 -9.80790 -9.66535 -9.32553 -9.21410 -8.97939 -8.54456 -8.49128 -6.05265 -4.03870 1.95987 2.61880 3.31432 3.32724 3.40130 3.45040 3.89485 4.07820 4.21783 4.26175 4.45811 4.74987 4.82346 4.86242 4.95176 5.02486 5.08535 5.22168 5.29017 5.34814 5.40706 5.51793 5.53140 5.59355 5.66130 5.71415 5.72173 5.79135 5.91327 6.05925 6.10331 6.32226 6.41764 6.48940 6.61157 6.74041 6.84876 7.07318 7.25222 7.38576 7.76928 8.05414 8.51371 8.70983 8.98567 9.57138 11.08007 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002960 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.067429 B = 9457.346177 C = 9999.012613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.112 4.112 11 C 0.133 3.867 12 N -0.739 5.739 13 C 0.719 3.281 14 O -0.592 6.592 15 N -0.642 5.642 16 C 0.107 3.893 17 C -0.095 4.095 18 H 0.080 0.920 19 C -0.077 4.077 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.090 4.090 23 C -0.092 4.092 24 H 0.103 0.897 25 C 0.129 3.871 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.718 -21.596 0.648 28.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.150 4.150 11 C 0.009 3.991 12 N -0.394 5.394 13 C 0.421 3.579 14 O -0.470 6.470 15 N -0.381 5.381 16 C -0.016 4.016 17 C -0.114 4.114 18 H 0.098 0.902 19 C -0.115 4.115 20 C -0.174 4.174 21 C -0.170 4.170 22 C -0.127 4.127 23 C -0.111 4.111 24 H 0.121 0.879 25 C 0.005 3.995 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.104 -20.642 0.650 28.133 hybrid contribution -0.075 0.479 0.072 0.491 sum 19.029 -20.162 0.723 27.733 Atomic orbital electron populations 1.69911 1.06322 1.26953 1.51096 1.25026 0.94746 0.99244 0.94469 0.86775 0.80431 0.83496 0.78604 1.20236 1.21391 1.18845 1.21100 0.89322 0.94498 1.51017 0.91025 1.19501 0.97222 0.91451 0.96705 1.21703 0.90676 1.01005 1.01655 1.21525 0.95681 0.80027 1.01829 1.45345 1.04650 1.10058 1.79355 1.15498 0.83051 0.81392 0.77996 1.90916 1.55245 1.42315 1.58537 1.47710 1.07387 1.03763 1.79270 1.22181 0.94075 0.84204 1.01126 1.21272 0.94911 0.94330 1.00903 0.90172 1.19558 1.01969 0.94460 0.95477 1.21855 0.99422 1.00329 0.95791 1.21737 0.98634 0.97007 0.99612 1.20407 1.00830 0.96006 0.95417 1.22437 0.98012 0.94358 0.96299 0.87864 1.22194 0.81863 0.93358 1.02077 0.92707 0.96261 0.96702 0.92190 0.92159 0.91972 0.91960 0.77181 0.91188 0.90664 0.90370 0.90476 0.87611 0.88076 0.90890 0.90383 0.91793 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.13 2.31 5.67 -4.04 -0.02 2.29 16 12 N -0.74 -11.10 5.52 -65.22 -0.36 -11.46 16 13 C 0.72 11.55 8.49 -86.92 -0.74 10.81 16 14 O -0.59 -11.93 16.67 5.29 0.09 -11.85 16 15 N -0.64 -7.69 3.33 -175.34 -0.58 -8.27 16 16 C 0.11 0.94 5.56 -2.84 -0.02 0.92 16 17 C -0.10 -0.66 2.62 -91.06 -0.24 -0.90 16 18 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 19 C -0.08 -0.44 5.59 -29.88 -0.17 -0.61 16 20 C -0.16 -0.97 9.88 -36.05 -0.36 -1.32 16 21 C -0.15 -1.01 9.77 -36.30 -0.35 -1.36 16 22 C -0.09 -0.62 4.65 -28.57 -0.13 -0.76 16 23 C -0.09 -0.64 3.94 -88.36 -0.35 -0.99 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 25 C 0.13 1.28 5.97 -2.12 -0.01 1.27 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 28 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.39 4.92 6.98 -40.82 -0.29 4.63 16 34 H 0.07 0.61 7.63 -51.93 -0.40 0.22 16 35 H 0.08 0.61 7.36 -51.93 -0.38 0.23 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 38 H 0.11 0.56 8.06 -52.48 -0.42 0.14 16 39 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.66 7.02 -51.93 -0.36 0.30 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -33.67 339.54 -9.96 -43.63 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.25 Total: -0.68 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.07 Total: -6.59 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.17 Total: -46.89 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.67 -9.96 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868209874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.732 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds