Wall clock time and date at job start Tue Mar 31 2020 00:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 N 1.34775 * 119.99585 * 179.72218 * 13 12 11 16 16 C 1.48042 * 125.65223 * 359.69582 * 15 13 12 17 17 C 1.53687 * 103.48364 * 156.61491 * 16 15 13 18 18 H 1.09000 * 108.27124 * 285.75913 * 17 16 15 19 19 C 1.50032 * 114.88671 * 164.05274 * 17 16 15 20 20 C 1.49615 * 113.24101 * 281.56119 * 19 17 16 21 21 C 1.29193 * 123.39108 * 347.39335 * 20 19 17 22 22 C 1.49092 * 124.68348 * 1.94310 * 21 20 19 23 23 C 1.53165 * 112.89405 * 342.21839 * 22 21 20 24 24 H 1.09005 * 112.88907 * 273.78525 * 23 22 21 25 25 C 1.47284 * 125.64661 * 179.97438 * 15 13 12 26 26 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 29 29 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 30 30 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 34 34 H 1.09005 * 110.59626 * 275.22711 * 16 15 13 35 35 H 1.08991 * 110.60202 * 38.17316 * 16 15 13 36 36 H 1.09000 * 108.74251 * 160.58069 * 19 17 16 37 37 H 1.09006 * 108.71812 * 42.52174 * 19 17 16 38 38 H 1.08003 * 118.30683 * 167.41183 * 20 19 17 39 39 H 1.08006 * 117.66195 * 181.92145 * 21 20 19 40 40 H 1.08999 * 108.80216 * 221.33706 * 22 21 20 41 41 H 1.08999 * 108.79838 * 103.09337 * 22 21 20 42 42 H 1.08996 * 110.01790 * 296.83735 * 25 15 13 43 43 H 1.09002 * 110.00877 * 58.21107 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1551 -3.3397 0.0038 15 7 7.8143 -5.5345 0.0083 16 6 6.9678 -6.7490 0.0148 17 6 7.8874 -7.8300 -0.5749 18 1 7.9720 -7.6585 -1.6480 19 6 7.4302 -9.2407 -0.3474 20 6 7.7235 -9.7413 1.0316 21 6 8.5098 -9.1328 1.8567 22 6 9.1976 -7.8401 1.5763 23 6 9.2437 -7.5013 0.0833 24 1 10.0981 -7.9467 -0.4264 25 6 9.2288 -5.9448 0.0141 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6807 0.8905 28 1 3.8752 -0.6795 -0.8895 29 1 3.6587 -3.1493 -0.8920 30 1 3.6579 -3.1512 0.8880 31 1 5.9150 -2.1234 0.8891 32 1 5.9149 -2.1217 -0.8909 33 1 5.4096 -4.7549 -0.0021 34 1 6.6736 -7.0059 1.0325 35 1 6.0897 -6.6077 -0.6152 36 1 7.9264 -9.8902 -1.0685 37 1 6.3545 -9.2914 -0.5167 38 1 7.2539 -10.6589 1.3541 39 1 8.6808 -9.5933 2.8185 40 1 10.2180 -7.8957 1.9554 41 1 8.6731 -7.0420 2.1015 42 1 9.7189 -5.6072 -0.8991 43 1 9.7345 -5.5281 0.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868209874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:14 Heat of formation + Delta-G solvation = -45.957842 kcal Electronic energy + Delta-G solvation = -21405.455697 eV Core-core repulsion = 18256.251657 eV Total energy + Delta-G solvation = -3149.204040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78234 -40.06940 -37.06871 -36.20082 -35.15854 -33.42953 -32.59049 -31.85087 -28.95969 -28.30231 -26.05171 -24.44026 -23.26349 -22.22170 -21.95349 -20.89264 -19.24501 -18.75876 -18.27288 -17.41533 -16.97116 -16.82234 -16.25706 -16.08688 -15.52120 -15.18559 -14.86300 -14.83113 -14.68295 -14.43017 -13.89558 -13.68303 -13.62191 -13.55775 -13.13216 -12.78855 -12.75085 -12.70020 -12.66096 -11.96666 -11.81279 -11.75943 -11.60580 -11.35243 -11.31607 -11.27247 -10.97770 -10.76120 -10.27550 -9.80284 -9.51414 -8.29444 -6.33255 1.37138 1.38735 1.48230 1.50772 1.55812 2.07161 2.36581 2.95124 3.06380 3.41108 3.52553 3.68110 4.07300 4.14147 4.19731 4.28344 4.35055 4.37062 4.45416 4.49154 4.52161 4.61072 4.69872 4.79523 4.87102 4.88748 4.95091 4.98114 5.02871 5.10215 5.14207 5.21496 5.33510 5.39187 5.40697 5.50525 5.55298 5.65111 5.85173 6.00202 6.14547 6.27425 6.74471 6.91368 7.31612 7.49251 8.86993 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002960 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.067429 B = 9457.346177 C = 9999.012613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.011 4.011 10 C -0.098 4.098 11 C 0.146 3.854 12 N -0.731 5.731 13 C 0.713 3.287 14 O -0.639 6.639 15 N -0.637 5.637 16 C 0.102 3.898 17 C -0.089 4.089 18 H 0.084 0.916 19 C -0.076 4.076 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.087 4.087 23 C -0.079 4.079 24 H 0.124 0.876 25 C 0.122 3.878 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.173 -22.896 0.295 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.049 4.049 10 C -0.136 4.136 11 C 0.022 3.978 12 N -0.387 5.387 13 C 0.415 3.585 14 O -0.521 6.521 15 N -0.375 5.375 16 C -0.020 4.020 17 C -0.108 4.108 18 H 0.103 0.897 19 C -0.113 4.113 20 C -0.172 4.172 21 C -0.183 4.183 22 C -0.124 4.124 23 C -0.098 4.098 24 H 0.142 0.858 25 C -0.001 4.001 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.560 -22.019 0.299 30.127 hybrid contribution -0.569 0.767 0.192 0.974 sum 19.992 -21.252 0.491 29.181 Atomic orbital electron populations 1.70053 1.08197 1.28147 1.52726 1.25969 0.95583 1.03396 0.94210 0.85707 0.79511 0.78541 0.79215 1.19199 1.20998 1.17201 1.21454 0.91818 0.93297 1.50233 0.94347 1.19459 0.94124 0.94509 0.96856 1.21467 0.91734 0.98242 1.02138 1.21172 0.94182 0.81281 1.01160 1.45080 1.04826 1.09564 1.79229 1.15661 0.82761 0.82217 0.77908 1.90876 1.56308 1.44207 1.60680 1.47746 1.08878 1.03320 1.77569 1.22419 0.94463 0.83396 1.01727 1.21264 0.94109 0.94512 1.00887 0.89743 1.19587 1.02664 0.93526 0.95549 1.22039 0.98748 1.00536 0.95894 1.21779 0.99304 0.97007 1.00198 1.20353 1.01213 0.95693 0.95168 1.22460 0.98962 0.91702 0.96630 0.85766 1.22380 0.80660 0.95688 1.01401 0.92485 0.96092 0.96140 0.91656 0.91787 0.92811 0.92600 0.75600 0.90990 0.89763 0.88852 0.89639 0.86599 0.87650 0.90075 0.92333 0.92246 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.01 0.31 5.47 84.65 0.46 0.77 16 3 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.53 -30.32 9.66 25.60 0.25 -30.07 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 11 C 0.15 4.97 5.67 86.38 0.49 5.46 16 12 N -0.73 -21.22 5.52 -478.53 -2.64 -23.86 16 13 C 0.71 22.58 8.49 179.05 1.52 24.10 16 14 O -0.64 -25.93 16.67 -3.98 -0.07 -26.00 16 15 N -0.64 -14.71 3.33 -826.92 -2.76 -17.47 16 16 C 0.10 1.60 5.56 86.31 0.48 2.08 16 17 C -0.09 -1.00 2.62 -11.08 -0.03 -1.03 16 18 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 19 C -0.08 -0.63 5.59 28.55 0.16 -0.47 16 20 C -0.15 -1.50 9.88 27.14 0.27 -1.23 16 21 C -0.16 -1.86 9.77 26.98 0.26 -1.60 16 22 C -0.09 -1.08 4.65 29.41 0.14 -0.95 16 23 C -0.08 -0.94 3.94 -9.33 -0.04 -0.97 16 24 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 25 C 0.12 2.33 5.97 87.20 0.52 2.85 16 26 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 28 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.41 9.53 6.98 -92.71 -0.65 8.89 16 34 H 0.07 1.14 7.63 -2.38 -0.02 1.12 16 35 H 0.08 1.18 7.36 -2.39 -0.02 1.17 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.61 8.10 -2.38 -0.02 0.59 16 38 H 0.12 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.96 7.02 -2.39 -0.02 0.94 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.25 7.69 -2.39 -0.02 1.23 16 Total: -1.00 -73.17 339.54 1.76 -71.41 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.28 Total: 13.55 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 4.77 Total: -4.94 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -5.10 Total: -100.70 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.07 Total: -26.00 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -73.17 1.76 -71.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868209874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.453 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds