Wall clock time and date at job start Tue Mar 31 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47417 * 70.20483 * 3 2 1 5 5 N 1.46893 * 109.47088 * 179.47613 * 4 3 2 6 6 C 1.46900 * 111.00320 * 300.50293 * 5 4 3 7 7 C 1.50700 * 109.47121 * 293.95507 * 6 5 4 8 8 H 1.08003 * 119.99612 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99834 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99843 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00243 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47199 * 90.00350 * 11 9 7 13 13 H 1.48509 * 109.47193 * 210.00107 * 11 9 7 14 14 H 1.48495 * 109.47212 * 330.00050 * 11 9 7 15 15 C 1.46901 * 111.00039 * 64.46009 * 5 4 3 16 16 C 1.53000 * 109.47399 * 75.34413 * 15 5 4 17 17 H 1.09005 * 109.83471 * 300.94956 * 16 15 5 18 18 C 1.54300 * 109.84612 * 179.91366 * 16 15 5 19 19 C 1.54933 * 102.58438 * 218.17975 * 18 16 15 20 20 H 1.08994 * 113.89145 * 156.45242 * 19 18 16 21 21 C 1.54430 * 108.73725 * 285.55422 * 19 18 16 22 22 C 1.54160 * 104.58169 * 143.62240 * 21 19 18 23 23 C 1.53764 * 106.65541 * 336.54534 * 22 21 19 24 24 C 1.54074 * 106.97324 * 0.49986 * 23 22 21 25 25 H 1.09002 * 112.92650 * 144.80431 * 24 23 22 26 26 O 1.43176 * 109.84732 * 61.87262 * 16 15 5 27 27 H 1.09000 * 109.47337 * 310.20755 * 3 2 1 28 28 H 1.09004 * 109.47382 * 190.20578 * 3 2 1 29 29 H 1.08994 * 109.46881 * 299.48310 * 4 3 2 30 30 H 1.09002 * 109.46600 * 59.47919 * 4 3 2 31 31 H 1.08997 * 109.47291 * 53.95695 * 6 5 4 32 32 H 1.09002 * 109.47135 * 173.95367 * 6 5 4 33 33 H 0.96998 * 120.00017 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47359 * 195.34830 * 15 5 4 35 35 H 1.09003 * 109.47115 * 315.34251 * 15 5 4 36 36 H 1.08998 * 110.78620 * 336.45197 * 18 16 15 37 37 H 1.08994 * 110.78812 * 99.90833 * 18 16 15 38 38 H 1.08995 * 110.41765 * 262.40425 * 21 19 18 39 39 H 1.09008 * 110.40822 * 24.73590 * 21 19 18 40 40 H 1.08995 * 110.02190 * 95.83909 * 22 21 19 41 41 H 1.08992 * 110.02390 * 217.20059 * 22 21 19 42 42 H 1.08998 * 109.96067 * 241.11886 * 23 22 21 43 43 H 1.08994 * 109.95756 * 119.87621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.4876 -1.3573 5 7 4.5871 -0.4750 -1.3615 6 6 5.1028 0.8777 -1.1123 7 6 4.7333 1.7763 -2.2643 8 1 4.1719 1.3817 -3.0983 9 6 5.1128 3.1017 -2.2539 10 7 4.7907 3.8858 -3.2596 11 14 6.0844 3.7838 -0.8117 12 1 7.5373 3.6274 -1.0754 13 1 5.7653 5.2236 -0.6366 14 1 5.7228 3.0429 0.4234 15 6 5.1246 -1.4316 -0.3847 16 6 4.9773 -2.8538 -0.9292 17 1 3.9264 -3.0685 -1.1235 18 6 5.5415 -3.8659 0.0897 19 6 6.2284 -4.9144 -0.8210 20 1 7.0155 -5.4820 -0.3248 21 6 5.1385 -5.7787 -1.4919 22 6 5.6818 -6.0587 -2.9071 23 6 6.6831 -4.9359 -3.2250 24 6 6.7304 -4.0131 -1.9920 25 1 7.7227 -3.6015 -1.8076 26 8 5.7331 -2.9924 -2.1373 27 1 2.9716 -0.6626 0.7848 28 1 2.9709 1.0122 0.1821 29 1 2.7630 -1.5026 -1.5352 30 1 2.7470 0.1703 -2.1430 31 1 4.6678 1.2687 -0.1925 32 1 6.1877 0.8406 -1.0140 33 1 5.0573 4.8184 -3.2521 34 1 6.1787 -1.2173 -0.2085 35 1 4.5743 -1.3423 0.5519 36 1 6.2686 -3.3888 0.7468 37 1 4.7377 -4.3224 0.6671 38 1 5.0030 -6.7117 -0.9450 39 1 4.1979 -5.2302 -1.5454 40 1 6.1855 -7.0250 -2.9290 41 1 4.8655 -6.0472 -3.6293 42 1 6.3481 -4.3745 -4.0972 43 1 7.6701 -5.3592 -3.4110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878310189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:33 Heat of formation + Delta-G solvation = -17.618571 kcal Electronic energy + Delta-G solvation = -22317.379379 eV Core-core repulsion = 19169.404223 eV Total energy + Delta-G solvation = -3147.975157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39782 -37.90861 -36.03957 -34.91564 -32.64396 -32.16101 -30.54255 -29.12008 -27.94906 -26.73995 -24.63324 -23.17462 -21.06063 -20.41532 -20.31929 -19.44473 -17.56683 -16.79010 -16.58463 -15.98248 -15.16624 -14.86877 -14.59997 -14.53745 -14.05246 -13.95877 -13.74998 -13.43594 -13.14904 -12.51224 -12.45188 -12.22126 -12.01309 -11.85413 -11.60914 -11.47880 -11.39134 -11.34510 -11.15719 -10.94791 -10.85719 -10.65687 -10.60361 -10.50070 -10.40334 -10.09226 -9.89524 -9.36062 -9.08316 -8.57573 -7.38928 -6.05231 -4.02945 3.06370 3.08900 3.26743 3.33168 3.35258 3.83824 4.27131 4.33997 4.40150 4.45140 4.65312 4.82121 5.06613 5.08411 5.14827 5.23628 5.27350 5.33421 5.39106 5.45593 5.49092 5.51898 5.60961 5.67812 5.72969 5.77779 5.81100 5.87880 5.91601 5.96709 6.09223 6.15809 6.22571 6.29499 6.34142 6.58971 6.79687 6.90521 7.42296 7.57665 7.80557 7.86684 7.99629 8.63556 9.05245 9.55741 11.07918 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.005198 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.515346 B = 5385.115184 C = 6421.354926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.224 3.776 3 C -0.075 4.075 4 C 0.071 3.929 5 N -0.506 5.506 6 C 0.156 3.844 7 C -0.508 4.508 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.035 3.965 16 C 0.092 3.908 17 H 0.074 0.926 18 C -0.148 4.148 19 C -0.126 4.126 20 H 0.098 0.902 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.128 4.128 24 C 0.074 3.926 25 H 0.079 0.921 26 O -0.343 6.343 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.097 0.903 31 H -0.006 1.006 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -18.806 7.451 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.059 4.059 5 N -0.227 5.227 6 C 0.030 3.970 7 C -0.547 4.547 8 H 0.100 0.900 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.699 3.301 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.094 4.094 16 C 0.033 3.967 17 H 0.091 0.909 18 C -0.186 4.186 19 C -0.144 4.144 20 H 0.116 0.884 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.165 4.165 24 C 0.016 3.984 25 H 0.097 0.903 26 O -0.262 6.262 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.012 0.988 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.929 -18.622 6.706 20.009 hybrid contribution 0.841 0.745 1.764 2.091 sum 3.770 -17.878 8.470 20.138 Atomic orbital electron populations 1.81144 1.13156 1.09814 1.09520 1.29208 0.95211 0.92413 0.92531 1.20252 0.81744 1.06237 1.03480 1.22120 0.88887 1.00935 0.93937 1.62104 1.04815 1.08381 1.47367 1.20318 0.95223 0.84955 0.96464 1.21014 1.35722 0.92955 1.04961 0.89970 1.24893 0.95733 0.96937 0.95665 1.69893 1.46797 1.06196 1.30856 0.86931 0.81065 0.78479 0.83656 1.20188 1.21321 1.19223 1.22617 1.00729 0.92618 0.93449 1.22697 0.95702 0.93856 0.84404 0.90867 1.23138 1.00764 0.96344 0.98398 1.23615 0.98033 0.96751 0.96023 0.88414 1.22293 0.98335 0.99208 0.95541 1.22062 0.98789 0.98132 0.96806 1.22274 0.99279 0.96047 0.98918 1.23634 0.92840 0.87723 0.94164 0.90339 1.88572 1.47625 1.56255 1.33760 0.88395 0.86258 0.91640 0.88503 0.98842 0.95595 0.92673 0.90837 0.94138 0.90588 0.90332 0.91877 0.91037 0.92167 0.91726 0.90360 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.31 18.54 42.15 0.78 -7.52 16 2 C 0.22 3.57 15.43 -20.76 -0.32 3.25 16 3 C -0.08 -1.08 5.07 -29.51 -0.15 -1.23 16 4 C 0.07 1.19 4.99 -3.83 -0.02 1.17 16 5 N -0.51 -9.34 4.54 -236.08 -1.07 -10.41 16 6 C 0.16 3.40 3.52 -4.98 -0.02 3.38 16 7 C -0.51 -13.57 9.07 -34.44 -0.31 -13.88 16 8 H 0.08 2.43 7.35 -52.48 -0.39 2.05 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 11 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 15 C 0.03 0.50 4.43 -3.82 -0.02 0.48 16 16 C 0.09 1.18 2.85 -26.05 -0.07 1.11 16 17 H 0.07 0.95 6.49 -51.93 -0.34 0.61 16 18 C -0.15 -1.43 5.87 -25.03 -0.15 -1.58 16 19 C -0.13 -1.18 4.29 -87.21 -0.37 -1.55 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.12 -1.06 6.02 -25.37 -0.15 -1.21 16 22 C -0.12 -1.11 6.80 -25.73 -0.17 -1.29 16 23 C -0.13 -1.35 6.46 -25.77 -0.17 -1.51 16 24 C 0.07 0.88 4.46 -24.53 -0.11 0.77 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 26 O -0.34 -5.28 10.35 -35.23 -0.36 -5.64 16 27 H 0.10 1.12 6.26 -51.93 -0.32 0.80 16 28 H 0.12 1.88 6.24 -51.93 -0.32 1.56 16 29 H 0.07 0.97 6.73 -51.93 -0.35 0.62 16 30 H 0.10 1.89 6.87 -51.93 -0.36 1.54 16 31 H -0.01 -0.12 5.03 -51.93 -0.26 -0.38 16 32 H 0.03 0.58 7.26 -51.93 -0.38 0.21 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 35 H 0.04 0.50 5.87 -51.93 -0.30 0.19 16 36 H 0.08 0.69 7.85 -51.93 -0.41 0.29 16 37 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.73 6.93 -51.92 -0.36 0.37 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -31.00 334.27 -8.38 -39.38 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.73 Total: -0.28 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.13 Total: -10.26 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.48 Total: -44.06 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.36 Total: -5.64 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.00 -8.38 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878310189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.764 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds