Wall clock time and date at job start Tue Mar 31 2020 00:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47417 * 70.20483 * 3 2 1 5 5 N 1.46893 * 109.47088 * 179.47613 * 4 3 2 6 6 C 1.46900 * 111.00320 * 300.50293 * 5 4 3 7 7 C 1.50700 * 109.47121 * 293.95507 * 6 5 4 8 8 H 1.08003 * 119.99612 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99834 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99843 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00243 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47199 * 90.00350 * 11 9 7 13 13 H 1.48509 * 109.47193 * 210.00107 * 11 9 7 14 14 H 1.48495 * 109.47212 * 330.00050 * 11 9 7 15 15 C 1.46901 * 111.00039 * 64.46009 * 5 4 3 16 16 C 1.53000 * 109.47399 * 75.34413 * 15 5 4 17 17 H 1.09005 * 109.83471 * 300.94956 * 16 15 5 18 18 C 1.54300 * 109.84612 * 179.91366 * 16 15 5 19 19 C 1.54933 * 102.58438 * 218.17975 * 18 16 15 20 20 H 1.08994 * 113.89145 * 156.45242 * 19 18 16 21 21 C 1.54430 * 108.73725 * 285.55422 * 19 18 16 22 22 C 1.54160 * 104.58169 * 143.62240 * 21 19 18 23 23 C 1.53764 * 106.65541 * 336.54534 * 22 21 19 24 24 C 1.54074 * 106.97324 * 0.49986 * 23 22 21 25 25 H 1.09002 * 112.92650 * 144.80431 * 24 23 22 26 26 O 1.43176 * 109.84732 * 61.87262 * 16 15 5 27 27 H 1.09000 * 109.47337 * 310.20755 * 3 2 1 28 28 H 1.09004 * 109.47382 * 190.20578 * 3 2 1 29 29 H 1.08994 * 109.46881 * 299.48310 * 4 3 2 30 30 H 1.09002 * 109.46600 * 59.47919 * 4 3 2 31 31 H 1.08997 * 109.47291 * 53.95695 * 6 5 4 32 32 H 1.09002 * 109.47135 * 173.95367 * 6 5 4 33 33 H 0.96998 * 120.00017 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47359 * 195.34830 * 15 5 4 35 35 H 1.09003 * 109.47115 * 315.34251 * 15 5 4 36 36 H 1.08998 * 110.78620 * 336.45197 * 18 16 15 37 37 H 1.08994 * 110.78812 * 99.90833 * 18 16 15 38 38 H 1.08995 * 110.41765 * 262.40425 * 21 19 18 39 39 H 1.09008 * 110.40822 * 24.73590 * 21 19 18 40 40 H 1.08995 * 110.02190 * 95.83909 * 22 21 19 41 41 H 1.08992 * 110.02390 * 217.20059 * 22 21 19 42 42 H 1.08998 * 109.96067 * 241.11886 * 23 22 21 43 43 H 1.08994 * 109.95756 * 119.87621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.4876 -1.3573 5 7 4.5871 -0.4750 -1.3615 6 6 5.1028 0.8777 -1.1123 7 6 4.7333 1.7763 -2.2643 8 1 4.1719 1.3817 -3.0983 9 6 5.1128 3.1017 -2.2539 10 7 4.7907 3.8858 -3.2596 11 14 6.0844 3.7838 -0.8117 12 1 7.5373 3.6274 -1.0754 13 1 5.7653 5.2236 -0.6366 14 1 5.7228 3.0429 0.4234 15 6 5.1246 -1.4316 -0.3847 16 6 4.9773 -2.8538 -0.9292 17 1 3.9264 -3.0685 -1.1235 18 6 5.5415 -3.8659 0.0897 19 6 6.2284 -4.9144 -0.8210 20 1 7.0155 -5.4820 -0.3248 21 6 5.1385 -5.7787 -1.4919 22 6 5.6818 -6.0587 -2.9071 23 6 6.6831 -4.9359 -3.2250 24 6 6.7304 -4.0131 -1.9920 25 1 7.7227 -3.6015 -1.8076 26 8 5.7331 -2.9924 -2.1373 27 1 2.9716 -0.6626 0.7848 28 1 2.9709 1.0122 0.1821 29 1 2.7630 -1.5026 -1.5352 30 1 2.7470 0.1703 -2.1430 31 1 4.6678 1.2687 -0.1925 32 1 6.1877 0.8406 -1.0140 33 1 5.0573 4.8184 -3.2521 34 1 6.1787 -1.2173 -0.2085 35 1 4.5743 -1.3423 0.5519 36 1 6.2686 -3.3888 0.7468 37 1 4.7377 -4.3224 0.6671 38 1 5.0030 -6.7117 -0.9450 39 1 4.1979 -5.2302 -1.5454 40 1 6.1855 -7.0250 -2.9290 41 1 4.8655 -6.0472 -3.6293 42 1 6.3481 -4.3745 -4.0972 43 1 7.6701 -5.3592 -3.4110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878310189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:32 Heat of formation + Delta-G solvation = -37.975814 kcal Electronic energy + Delta-G solvation = -22318.262136 eV Core-core repulsion = 19169.404223 eV Total energy + Delta-G solvation = -3148.857913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.00 seconds Orbital eigenvalues (eV) -41.29311 -39.24905 -37.37948 -35.88805 -34.60735 -33.15108 -31.87612 -30.49294 -28.80086 -28.11682 -25.79918 -24.65904 -22.20028 -21.43726 -21.15791 -20.61737 -19.04824 -18.53942 -17.52890 -17.12403 -16.41935 -16.26417 -15.69566 -15.59563 -15.38200 -15.14314 -15.05971 -14.68329 -14.35389 -14.01049 -13.71576 -13.53665 -13.16938 -13.04878 -13.03127 -12.73672 -12.61648 -12.31904 -12.29675 -12.12676 -11.97221 -11.88250 -11.67348 -11.62629 -11.46208 -11.35636 -11.23936 -11.13050 -10.68984 -10.17712 -8.78510 -8.18884 -6.21461 1.41921 1.43157 1.52752 1.75520 1.79771 2.41940 2.87827 3.08359 3.16548 3.43195 3.54977 3.70986 3.97365 4.12242 4.14940 4.20736 4.27601 4.35573 4.42970 4.51339 4.56330 4.65498 4.66266 4.71642 4.84243 4.87698 4.90846 4.92818 5.09522 5.10711 5.15437 5.17493 5.19691 5.29333 5.30300 5.35834 5.48870 5.56331 5.65173 6.08189 6.38922 6.55686 6.61414 6.80138 6.87257 7.42005 8.98197 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.005198 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.515346 B = 5385.115184 C = 6421.354926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.244 3.756 3 C -0.062 4.062 4 C 0.077 3.923 5 N -0.529 5.529 6 C 0.166 3.834 7 C -0.507 4.507 8 H 0.033 0.967 9 C 0.004 3.996 10 N -0.955 5.955 11 Si 0.943 3.057 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.232 1.232 15 C 0.035 3.965 16 C 0.088 3.912 17 H 0.070 0.930 18 C -0.139 4.139 19 C -0.114 4.114 20 H 0.122 0.878 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.129 4.129 24 C 0.060 3.940 25 H 0.076 0.924 26 O -0.383 6.383 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -21.000 10.989 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.073 4.073 3 C -0.104 4.104 4 C -0.054 4.054 5 N -0.251 5.251 6 C 0.039 3.961 7 C -0.546 4.546 8 H 0.051 0.949 9 C -0.193 4.193 10 N -0.597 5.597 11 Si 0.766 3.234 12 H -0.197 1.197 13 H -0.218 1.218 14 H -0.155 1.155 15 C -0.093 4.093 16 C 0.030 3.970 17 H 0.088 0.912 18 C -0.177 4.177 19 C -0.132 4.132 20 H 0.140 0.860 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.167 4.167 24 C 0.003 3.997 25 H 0.094 0.906 26 O -0.303 6.303 27 H 0.160 0.840 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.149 -20.859 10.261 23.614 hybrid contribution 0.446 1.358 0.502 1.515 sum 4.596 -19.502 10.764 22.744 Atomic orbital electron populations 1.81168 1.14383 1.11138 1.10811 1.29405 0.95313 0.91225 0.91328 1.20224 0.80450 1.06594 1.03130 1.21941 0.88168 1.01140 0.94110 1.61926 1.05714 1.07393 1.50016 1.20073 0.95210 0.86045 0.94766 1.21305 1.34187 0.93897 1.05177 0.94908 1.25867 0.97133 0.97376 0.98874 1.70085 1.49181 1.06609 1.33820 0.85784 0.79152 0.77532 0.80903 1.19743 1.21752 1.15524 1.22747 1.00646 0.92180 0.93742 1.22787 0.95644 0.93804 0.84799 0.91200 1.23116 1.01544 0.95402 0.97672 1.23631 0.98387 0.96312 0.94865 0.86023 1.22300 0.97600 0.99975 0.95448 1.22069 0.98268 0.98430 0.96942 1.22295 1.00567 0.96222 0.97589 1.23853 0.92170 0.87760 0.95951 0.90588 1.88542 1.48634 1.57624 1.35470 0.84047 0.87115 0.89717 0.92803 0.96792 0.95661 0.92831 0.91218 0.90890 0.89506 0.88211 0.89750 0.92441 0.90214 0.92732 0.93080 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.60 18.54 20.01 0.37 -17.23 16 2 C 0.24 7.44 15.43 89.44 1.38 8.82 16 3 C -0.06 -1.64 5.07 28.79 0.15 -1.49 16 4 C 0.08 2.51 4.99 86.31 0.43 2.94 16 5 N -0.53 -19.09 4.54 -900.81 -4.09 -23.18 16 6 C 0.17 7.04 3.52 85.56 0.30 7.34 16 7 C -0.51 -27.94 9.07 25.60 0.23 -27.70 16 8 H 0.03 2.07 7.35 -2.91 -0.02 2.05 16 9 C 0.00 0.21 5.47 84.65 0.46 0.68 16 10 N -0.96 -59.63 13.96 21.45 0.30 -59.33 16 11 Si 0.94 41.90 27.47 68.60 1.88 43.78 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.23 -8.94 6.54 99.48 0.65 -8.29 16 15 C 0.03 0.90 4.43 86.30 0.38 1.28 16 16 C 0.09 2.07 2.85 31.04 0.09 2.16 16 17 H 0.07 1.66 6.49 -2.38 -0.02 1.65 16 18 C -0.14 -2.14 5.87 31.70 0.19 -1.96 16 19 C -0.11 -1.74 4.29 -8.58 -0.04 -1.78 16 20 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.12 -1.79 6.02 31.47 0.19 -1.60 16 22 C -0.12 -2.01 6.80 31.24 0.21 -1.80 16 23 C -0.13 -2.64 6.46 31.21 0.20 -2.44 16 24 C 0.06 1.34 4.46 32.02 0.14 1.48 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 O -0.38 -11.61 10.35 -148.98 -1.54 -13.16 16 27 H 0.14 2.53 6.26 -2.39 -0.01 2.51 16 28 H 0.11 3.22 6.24 -2.38 -0.01 3.20 16 29 H 0.08 2.43 6.73 -2.39 -0.02 2.41 16 30 H 0.05 2.22 6.87 -2.39 -0.02 2.20 16 31 H 0.01 0.56 5.03 -2.39 -0.01 0.55 16 32 H 0.03 1.09 7.26 -2.39 -0.02 1.07 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.07 1.89 7.74 -2.39 -0.02 1.87 16 35 H 0.07 1.42 5.87 -2.39 -0.01 1.41 16 36 H 0.09 1.18 7.85 -2.39 -0.02 1.16 16 37 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.05 6.93 -2.38 -0.02 1.03 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 1.30 8.07 -2.39 -0.02 1.28 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.70 334.27 2.18 -69.52 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.94 Total: 13.68 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 4.32 Total: -14.08 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -3.42 Total: -99.74 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.54 Total: -13.16 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.78 kcal Total: -71.70 2.18 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878310189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.541 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.00 seconds