Wall clock time and date at job start Tue Mar 31 2020 00:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46974 * 138.67808 * 3 2 1 5 5 N 1.46898 * 109.47238 * 182.20287 * 4 3 2 6 6 C 1.46905 * 110.99723 * 163.72953 * 5 4 3 7 7 C 1.50699 * 109.47100 * 290.38275 * 6 5 4 8 8 H 1.07996 * 119.99934 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99623 * 180.27778 * 7 6 5 10 10 N 1.31510 * 120.00425 * 359.72719 * 9 7 6 11 11 Si 1.86804 * 119.99709 * 179.72506 * 9 7 6 12 12 H 1.48499 * 109.47139 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47329 * 120.00114 * 11 9 7 14 14 H 1.48504 * 109.47103 * 239.99834 * 11 9 7 15 15 C 1.46903 * 110.99807 * 287.68107 * 5 4 3 16 16 C 1.53002 * 109.46593 * 157.84205 * 15 5 4 17 17 H 1.08999 * 110.33553 * 307.14241 * 16 15 5 18 18 C 1.54440 * 110.36944 * 184.88951 * 16 15 5 19 19 C 1.54272 * 104.16241 * 216.25816 * 18 16 15 20 20 H 1.09000 * 112.75354 * 238.94860 * 19 18 16 21 21 C 1.54651 * 108.82792 * 112.36124 * 19 18 16 22 22 C 1.56297 * 102.25382 * 210.59873 * 21 19 18 23 23 C 1.54195 * 103.85958 * 39.11742 * 22 21 19 24 24 C 1.53809 * 106.77027 * 335.39203 * 23 22 21 25 25 H 1.09005 * 111.85845 * 238.03282 * 24 23 22 26 26 O 1.44281 * 110.37666 * 69.52084 * 16 15 5 27 27 H 1.08998 * 109.47509 * 18.68027 * 3 2 1 28 28 H 1.08992 * 109.47644 * 258.67608 * 3 2 1 29 29 H 1.09000 * 109.46831 * 62.20046 * 4 3 2 30 30 H 1.09004 * 109.47124 * 302.20533 * 4 3 2 31 31 H 1.09006 * 109.46627 * 170.38116 * 6 5 4 32 32 H 1.09002 * 109.47543 * 50.38690 * 6 5 4 33 33 H 0.97002 * 120.00577 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47190 * 277.83950 * 15 5 4 35 35 H 1.09002 * 109.47120 * 37.84250 * 15 5 4 36 36 H 1.09001 * 110.49305 * 334.92739 * 18 16 15 37 37 H 1.09003 * 110.49318 * 97.45671 * 18 16 15 38 38 H 1.09006 * 110.72247 * 330.05138 * 21 19 18 39 39 H 1.08995 * 110.72617 * 93.33283 * 21 19 18 40 40 H 1.09005 * 111.18893 * 280.27727 * 22 21 19 41 41 H 1.09003 * 110.10189 * 157.42265 * 22 21 19 42 42 H 1.09000 * 109.99901 * 216.06996 * 23 22 21 43 43 H 1.08999 * 110.00443 * 94.72338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0842 -0.9525 5 7 4.5855 1.0500 -0.9927 6 6 5.0976 1.7878 -2.1553 7 6 4.7632 1.0331 -3.4162 8 1 4.2247 0.0987 -3.3595 9 6 5.1504 1.5325 -4.6416 10 7 5.8068 2.6700 -4.7106 11 14 4.7427 0.5931 -6.2040 12 1 4.0049 -0.6480 -5.8571 13 1 3.9001 1.4406 -7.0855 14 1 5.9997 0.2398 -6.9114 15 6 5.1586 1.5711 0.2555 16 6 6.5817 1.0356 0.4257 17 1 6.5906 -0.0509 0.3389 18 6 7.1603 1.4708 1.7899 19 6 8.6520 1.7367 1.4997 20 1 9.3157 1.1164 2.1020 21 6 8.9273 3.2512 1.6494 22 6 10.0846 3.4808 0.6243 23 6 9.6988 2.5903 -0.5739 24 6 8.7954 1.4735 -0.0242 25 1 9.2026 0.4837 -0.2303 26 8 7.4614 1.6271 -0.5531 27 1 2.9718 -0.9727 -0.3291 28 1 2.9713 0.2026 1.0075 29 1 2.7862 2.0615 -0.6014 30 1 2.7223 0.9043 -1.9523 31 1 6.1792 1.8934 -2.0710 32 1 4.6378 2.7755 -2.1903 33 1 6.0788 3.0215 -5.5728 34 1 5.1823 2.6602 0.2177 35 1 4.5464 1.2500 1.0983 36 1 6.6715 2.3803 2.1391 37 1 7.0486 0.6727 2.5239 38 1 8.0391 3.8313 1.3987 39 1 9.2689 3.4833 2.6580 40 1 11.0443 3.1700 1.0374 41 1 10.1182 4.5286 0.3257 42 1 10.5943 2.1590 -1.0214 43 1 9.1568 3.1772 -1.3155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878310190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:36 Heat of formation + Delta-G solvation = -25.926048 kcal Electronic energy + Delta-G solvation = -22305.561227 eV Core-core repulsion = 19157.225831 eV Total energy + Delta-G solvation = -3148.335396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97267 -37.43246 -36.12773 -34.82576 -32.64947 -32.00681 -30.81181 -28.60568 -27.47297 -26.31433 -24.18808 -22.89753 -21.15014 -20.64537 -19.72027 -19.61288 -17.28851 -16.65451 -16.28332 -15.55914 -15.21177 -14.81446 -14.62653 -14.51873 -13.89638 -13.61513 -13.47999 -13.27210 -12.82621 -12.40571 -12.28339 -12.23823 -11.97048 -11.70035 -11.46163 -11.44384 -11.11548 -11.01557 -10.86233 -10.71103 -10.65669 -10.58051 -10.53802 -10.28418 -10.23195 -10.17155 -9.74504 -9.13887 -9.03201 -8.32880 -7.32261 -5.93393 -3.93440 2.96953 3.00793 3.35431 3.43189 3.47219 4.12212 4.20274 4.49646 4.59860 4.61507 4.91239 5.01834 5.24893 5.31669 5.36288 5.37447 5.42303 5.44572 5.58238 5.62789 5.66939 5.67439 5.78113 5.78674 5.83812 5.97824 5.99907 6.04369 6.08245 6.14743 6.27102 6.30892 6.38279 6.45402 6.54942 6.59420 7.36297 7.45927 7.51041 7.78630 7.87671 8.22361 8.29965 8.59625 9.14379 9.69177 11.17037 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.006420 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.323925 B = 4360.088748 C = 6528.677942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.219 3.781 3 C -0.028 4.028 4 C 0.064 3.936 5 N -0.531 5.531 6 C 0.187 3.813 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.056 3.944 16 C 0.087 3.913 17 H 0.072 0.928 18 C -0.147 4.147 19 C -0.124 4.124 20 H 0.087 0.913 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.123 4.123 24 C 0.070 3.930 25 H 0.069 0.931 26 O -0.338 6.338 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.068 0.932 32 H -0.014 1.014 33 H 0.258 0.742 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.322 -1.364 14.558 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.099 4.099 3 C -0.068 4.068 4 C -0.066 4.066 5 N -0.255 5.255 6 C 0.063 3.937 7 C -0.544 4.544 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.073 4.073 16 C 0.028 3.972 17 H 0.090 0.910 18 C -0.186 4.186 19 C -0.143 4.143 20 H 0.105 0.895 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.161 4.161 24 C 0.012 3.988 25 H 0.087 0.913 26 O -0.257 6.257 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.046 0.954 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.004 0.996 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.781 -1.621 14.155 15.376 hybrid contribution 0.132 0.288 -0.708 0.776 sum 5.913 -1.333 13.447 14.750 Atomic orbital electron populations 1.81164 1.13290 1.09499 1.09517 1.29399 0.95469 0.92522 0.92500 1.19455 0.80449 1.04142 1.02768 1.21898 0.90357 0.94423 0.99905 1.62102 1.03731 1.56755 1.02956 1.20018 0.97700 0.90642 0.85361 1.21207 1.35625 1.07173 0.90355 0.92048 1.24935 0.95484 0.95083 0.98957 1.69975 1.39313 1.19445 1.24706 0.86560 0.77981 0.79992 0.83565 1.19751 1.21314 1.21143 1.22187 0.93397 0.97772 0.93929 1.22931 0.90625 0.97703 0.85904 0.91032 1.23052 0.95164 1.01965 0.98396 1.23248 0.96508 0.97303 0.97255 0.89456 1.22789 0.98745 0.95056 0.98530 1.22602 0.97847 0.99773 0.95773 1.22172 0.98647 0.96806 0.98465 1.23493 0.86066 0.97920 0.91331 0.91308 1.89376 1.14406 1.79779 1.42090 0.86618 0.88259 0.95357 0.88805 0.91456 0.99607 0.93208 0.94517 0.91053 0.90803 0.91169 0.90715 0.92104 0.91851 0.91723 0.91543 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.77 18.54 42.15 0.78 -6.99 16 2 C 0.22 3.17 15.43 -20.76 -0.32 2.85 16 3 C -0.03 -0.34 5.74 -29.52 -0.17 -0.51 16 4 C 0.06 1.08 4.75 -3.82 -0.02 1.06 16 5 N -0.53 -10.13 4.34 -236.06 -1.02 -11.16 16 6 C 0.19 4.65 4.53 -4.97 -0.02 4.63 16 7 C -0.50 -13.75 8.33 -34.44 -0.29 -14.04 16 8 H 0.06 1.65 7.50 -52.49 -0.39 1.25 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 11 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.06 0.87 4.57 -3.82 -0.02 0.85 16 16 C 0.09 1.30 3.50 -25.98 -0.09 1.21 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.15 -1.68 6.15 -25.31 -0.16 -1.84 16 19 C -0.12 -1.41 3.98 -87.86 -0.35 -1.76 16 20 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 21 C -0.11 -1.24 6.27 -24.09 -0.15 -1.39 16 22 C -0.12 -1.35 6.88 -24.34 -0.17 -1.51 16 23 C -0.12 -1.68 6.58 -25.69 -0.17 -1.85 16 24 C 0.07 1.00 4.17 -25.08 -0.10 0.90 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 O -0.34 -6.20 8.21 -35.23 -0.29 -6.49 16 27 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.10 0.97 6.62 -51.93 -0.34 0.62 16 29 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 30 H 0.09 1.82 6.87 -51.93 -0.36 1.46 16 31 H 0.07 1.82 5.27 -51.93 -0.27 1.55 16 32 H -0.01 -0.38 8.08 -51.93 -0.42 -0.80 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.04 0.63 7.96 -51.93 -0.41 0.21 16 35 H 0.07 0.86 6.27 -51.93 -0.33 0.54 16 36 H 0.07 0.82 7.13 -51.93 -0.37 0.45 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.38 7.95 -51.93 -0.41 0.97 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -31.32 342.46 -8.84 -40.16 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -7.06 Total: -1.67 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.12 Total: -9.92 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.49 Total: -43.86 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.29 Total: -6.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.32 -8.84 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878310190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.235 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds