Wall clock time and date at job start Tue Mar 31 2020 00:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46974 * 138.67808 * 3 2 1 5 5 N 1.46898 * 109.47238 * 182.20287 * 4 3 2 6 6 C 1.46905 * 110.99723 * 163.72953 * 5 4 3 7 7 C 1.50699 * 109.47100 * 290.38275 * 6 5 4 8 8 H 1.07996 * 119.99934 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99623 * 180.27778 * 7 6 5 10 10 N 1.31510 * 120.00425 * 359.72719 * 9 7 6 11 11 Si 1.86804 * 119.99709 * 179.72506 * 9 7 6 12 12 H 1.48499 * 109.47139 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47329 * 120.00114 * 11 9 7 14 14 H 1.48504 * 109.47103 * 239.99834 * 11 9 7 15 15 C 1.46903 * 110.99807 * 287.68107 * 5 4 3 16 16 C 1.53002 * 109.46593 * 157.84205 * 15 5 4 17 17 H 1.08999 * 110.33553 * 307.14241 * 16 15 5 18 18 C 1.54440 * 110.36944 * 184.88951 * 16 15 5 19 19 C 1.54272 * 104.16241 * 216.25816 * 18 16 15 20 20 H 1.09000 * 112.75354 * 238.94860 * 19 18 16 21 21 C 1.54651 * 108.82792 * 112.36124 * 19 18 16 22 22 C 1.56297 * 102.25382 * 210.59873 * 21 19 18 23 23 C 1.54195 * 103.85958 * 39.11742 * 22 21 19 24 24 C 1.53809 * 106.77027 * 335.39203 * 23 22 21 25 25 H 1.09005 * 111.85845 * 238.03282 * 24 23 22 26 26 O 1.44281 * 110.37666 * 69.52084 * 16 15 5 27 27 H 1.08998 * 109.47509 * 18.68027 * 3 2 1 28 28 H 1.08992 * 109.47644 * 258.67608 * 3 2 1 29 29 H 1.09000 * 109.46831 * 62.20046 * 4 3 2 30 30 H 1.09004 * 109.47124 * 302.20533 * 4 3 2 31 31 H 1.09006 * 109.46627 * 170.38116 * 6 5 4 32 32 H 1.09002 * 109.47543 * 50.38690 * 6 5 4 33 33 H 0.97002 * 120.00577 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47190 * 277.83950 * 15 5 4 35 35 H 1.09002 * 109.47120 * 37.84250 * 15 5 4 36 36 H 1.09001 * 110.49305 * 334.92739 * 18 16 15 37 37 H 1.09003 * 110.49318 * 97.45671 * 18 16 15 38 38 H 1.09006 * 110.72247 * 330.05138 * 21 19 18 39 39 H 1.08995 * 110.72617 * 93.33283 * 21 19 18 40 40 H 1.09005 * 111.18893 * 280.27727 * 22 21 19 41 41 H 1.09003 * 110.10189 * 157.42265 * 22 21 19 42 42 H 1.09000 * 109.99901 * 216.06996 * 23 22 21 43 43 H 1.08999 * 110.00443 * 94.72338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0842 -0.9525 5 7 4.5855 1.0500 -0.9927 6 6 5.0976 1.7878 -2.1553 7 6 4.7632 1.0331 -3.4162 8 1 4.2247 0.0987 -3.3595 9 6 5.1504 1.5325 -4.6416 10 7 5.8068 2.6700 -4.7106 11 14 4.7427 0.5931 -6.2040 12 1 4.0049 -0.6480 -5.8571 13 1 3.9001 1.4406 -7.0855 14 1 5.9997 0.2398 -6.9114 15 6 5.1586 1.5711 0.2555 16 6 6.5817 1.0356 0.4257 17 1 6.5906 -0.0509 0.3389 18 6 7.1603 1.4708 1.7899 19 6 8.6520 1.7367 1.4997 20 1 9.3157 1.1164 2.1020 21 6 8.9273 3.2512 1.6494 22 6 10.0846 3.4808 0.6243 23 6 9.6988 2.5903 -0.5739 24 6 8.7954 1.4735 -0.0242 25 1 9.2026 0.4837 -0.2303 26 8 7.4614 1.6271 -0.5531 27 1 2.9718 -0.9727 -0.3291 28 1 2.9713 0.2026 1.0075 29 1 2.7862 2.0615 -0.6014 30 1 2.7223 0.9043 -1.9523 31 1 6.1792 1.8934 -2.0710 32 1 4.6378 2.7755 -2.1903 33 1 6.0788 3.0215 -5.5728 34 1 5.1823 2.6602 0.2177 35 1 4.5464 1.2500 1.0983 36 1 6.6715 2.3803 2.1391 37 1 7.0486 0.6727 2.5239 38 1 8.0391 3.8313 1.3987 39 1 9.2689 3.4833 2.6580 40 1 11.0443 3.1700 1.0374 41 1 10.1182 4.5286 0.3257 42 1 10.5943 2.1590 -1.0214 43 1 9.1568 3.1772 -1.3155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878310190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:35 Heat of formation + Delta-G solvation = -45.543519 kcal Electronic energy + Delta-G solvation = -22306.411904 eV Core-core repulsion = 19157.225831 eV Total energy + Delta-G solvation = -3149.186073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05994 -38.81610 -37.41377 -35.98170 -34.69451 -33.12115 -32.13713 -30.04422 -28.49429 -27.97440 -25.35255 -24.70849 -22.33453 -21.86028 -20.93739 -20.69834 -18.60932 -18.26005 -17.66611 -16.82958 -16.46666 -16.38870 -15.99703 -15.88009 -15.08841 -14.89201 -14.84179 -14.34280 -14.09690 -14.03374 -13.60799 -13.46724 -13.41383 -13.14695 -12.99111 -12.67375 -12.56502 -12.44408 -12.22868 -12.05498 -11.93997 -11.78663 -11.62743 -11.59155 -11.45634 -11.39836 -11.18234 -10.97456 -10.50279 -10.30635 -8.95827 -8.10233 -6.17497 1.41336 1.42368 1.54614 1.77292 1.85419 2.44601 2.96801 3.08770 3.23646 3.53485 3.64213 3.74581 4.05557 4.15410 4.23302 4.28419 4.34557 4.43109 4.46274 4.56718 4.62163 4.66173 4.71854 4.79382 4.83597 4.89240 4.96407 5.07858 5.09811 5.15403 5.15847 5.20951 5.26092 5.33427 5.40369 5.40528 5.58146 5.68503 5.77226 6.21386 6.33001 6.51980 6.62528 6.76271 7.01324 7.50068 9.00458 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.006420 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.323925 B = 4360.088748 C = 6528.677942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.242 3.758 3 C -0.009 4.009 4 C 0.063 3.937 5 N -0.530 5.530 6 C 0.205 3.795 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.958 3.042 12 H -0.261 1.261 13 H -0.285 1.285 14 H -0.282 1.282 15 C 0.055 3.945 16 C 0.078 3.922 17 H 0.071 0.929 18 C -0.137 4.137 19 C -0.113 4.113 20 H 0.116 0.884 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.127 4.127 24 C 0.057 3.943 25 H 0.070 0.930 26 O -0.386 6.386 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.044 0.956 32 H -0.054 1.054 33 H 0.259 0.741 34 H 0.015 0.985 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.822 -3.058 17.086 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.075 4.075 3 C -0.049 4.049 4 C -0.067 4.067 5 N -0.254 5.254 6 C 0.079 3.921 7 C -0.551 4.551 8 H 0.082 0.918 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.211 1.211 14 H -0.208 1.208 15 C -0.073 4.073 16 C 0.021 3.979 17 H 0.089 0.911 18 C -0.175 4.175 19 C -0.132 4.132 20 H 0.134 0.866 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.001 4.001 25 H 0.088 0.912 26 O -0.307 6.307 27 H 0.151 0.849 28 H 0.159 0.841 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.062 0.938 32 H -0.037 1.037 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.270 -3.332 16.708 18.154 hybrid contribution 0.004 0.844 -1.504 1.725 sum 6.273 -2.488 15.204 16.635 Atomic orbital electron populations 1.81196 1.14743 1.10941 1.11099 1.29630 0.95579 0.91163 0.91084 1.19409 0.78838 1.03064 1.03604 1.21843 0.88945 0.96267 0.99601 1.61983 1.05059 1.55618 1.02705 1.19575 0.96138 0.89032 0.87396 1.21583 1.34857 1.07160 0.91514 0.91784 1.25813 0.95499 0.95967 1.02481 1.70120 1.40746 1.21189 1.25436 0.85510 0.77809 0.78934 0.79417 1.18541 1.21072 1.20783 1.22390 0.94848 0.96610 0.93443 1.23110 0.89865 0.97466 0.87490 0.91085 1.23012 0.94664 1.03159 0.96634 1.23272 0.97178 0.97842 0.94895 0.86564 1.22784 0.97811 0.94620 0.99794 1.22605 0.99168 0.99012 0.94612 1.22205 0.98480 0.96952 0.98878 1.23733 0.84574 0.97957 0.93818 0.91250 1.89339 1.16581 1.80356 1.44389 0.84925 0.84148 0.95412 0.92068 0.93835 1.03682 0.93250 0.96629 0.86366 0.90423 0.87964 0.92844 0.89292 0.89269 0.92014 0.90646 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.46 18.54 20.01 0.37 -16.09 16 2 C 0.24 6.52 15.43 89.44 1.38 7.90 16 3 C -0.01 -0.20 5.74 28.79 0.17 -0.03 16 4 C 0.06 2.09 4.75 86.30 0.41 2.50 16 5 N -0.53 -20.23 4.34 -900.75 -3.91 -24.14 16 6 C 0.20 10.67 4.53 85.56 0.39 11.06 16 7 C -0.51 -28.78 8.33 25.60 0.21 -28.57 16 8 H 0.06 3.48 7.50 -2.91 -0.02 3.46 16 9 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 10 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 11 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 C 0.06 1.66 4.57 86.30 0.39 2.05 16 16 C 0.08 2.26 3.50 31.08 0.11 2.37 16 17 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 18 C -0.14 -2.69 6.15 31.51 0.19 -2.49 16 19 C -0.11 -2.27 3.98 -9.01 -0.04 -2.31 16 20 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.11 -2.23 6.27 32.30 0.20 -2.03 16 22 C -0.12 -2.43 6.88 32.15 0.22 -2.21 16 23 C -0.13 -3.59 6.58 31.27 0.21 -3.38 16 24 C 0.06 1.62 4.17 31.66 0.13 1.75 16 25 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 26 O -0.39 -14.71 8.21 -148.98 -1.22 -15.94 16 27 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.14 1.98 6.62 -2.39 -0.02 1.97 16 29 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 30 H 0.06 2.41 6.87 -2.38 -0.02 2.40 16 31 H 0.04 2.51 5.27 -2.38 -0.01 2.50 16 32 H -0.05 -3.21 8.08 -2.39 -0.02 -3.23 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.02 0.54 7.96 -2.38 -0.02 0.52 16 35 H 0.12 2.39 6.27 -2.39 -0.01 2.37 16 36 H 0.08 1.49 7.13 -2.39 -0.02 1.47 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.28 7.60 -2.38 -0.02 1.26 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 1.49 7.95 -2.39 -0.02 1.47 16 Total: -1.00 -73.32 342.46 2.98 -70.34 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.98 Total: 8.79 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.44 Total: -12.94 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -3.25 Total: -97.52 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.22 Total: -15.94 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.32 2.98 -70.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878310190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.800 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds