Wall clock time and date at job start Tue Mar 31 2020 00:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99519 * 2 1 4 4 H 1.48507 * 109.46766 * 272.47624 * 3 2 1 5 5 H 1.48502 * 109.47196 * 32.47496 * 3 2 1 6 6 H 1.48497 * 109.47155 * 152.48025 * 3 2 1 7 7 C 1.37873 * 120.00826 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99384 * 344.53843 * 7 2 1 9 9 C 1.50696 * 120.00465 * 164.52658 * 7 2 1 10 10 C 1.52997 * 115.55051 * 325.17371 * 9 7 2 11 11 N 1.46903 * 109.47041 * 305.20279 * 10 9 7 12 12 C 1.47142 * 110.99722 * 317.84390 * 11 10 9 13 13 C 1.52892 * 110.25474 * 175.79195 * 12 11 10 14 14 C 1.53383 * 109.93194 * 57.58397 * 13 12 11 15 15 C 1.52776 * 108.34958 * 303.06552 * 14 13 12 16 16 H 1.09001 * 109.47085 * 299.64204 * 15 14 13 17 17 C 1.52801 * 111.43752 * 178.41348 * 15 14 13 18 18 C 1.53063 * 108.39695 * 173.08749 * 17 15 14 19 19 N 1.45620 * 111.31040 * 47.85260 * 18 17 15 20 20 C 1.33720 * 124.66882 * 343.15932 * 19 18 17 21 21 O 1.21279 * 118.83602 * 183.80519 * 20 19 18 22 22 C 1.46409 * 110.99844 * 194.76489 * 11 10 9 23 23 H 1.08997 * 108.80499 * 68.05595 * 22 11 10 24 24 C 1.53006 * 117.49705 * 110.83677 * 9 7 2 25 25 C 1.53001 * 117.50242 * 179.49787 * 9 7 2 26 26 H 0.96995 * 120.00010 * 5.00302 * 1 2 3 27 27 H 1.09002 * 109.47337 * 185.20422 * 10 9 7 28 28 H 1.08999 * 109.47771 * 65.20403 * 10 9 7 29 29 H 1.08993 * 109.34182 * 296.03221 * 12 11 10 30 30 H 1.09000 * 109.33771 * 55.55375 * 12 11 10 31 31 H 1.09000 * 109.38594 * 177.72068 * 13 12 11 32 32 H 1.09000 * 109.38843 * 297.52738 * 13 12 11 33 33 H 1.08994 * 109.67073 * 183.35952 * 14 13 12 34 34 H 1.09003 * 109.70096 * 62.78943 * 14 13 12 35 35 H 1.09002 * 109.67812 * 53.36066 * 17 15 14 36 36 H 1.09004 * 109.67808 * 292.81717 * 17 15 14 37 37 H 1.09003 * 109.11097 * 287.38070 * 18 17 15 38 38 H 1.08999 * 109.11469 * 168.32256 * 18 17 15 39 39 H 0.97001 * 117.66506 * 162.88057 * 19 18 17 40 40 H 1.09001 * 117.50092 * 215.00523 * 24 9 7 41 41 H 1.09001 * 117.49590 * 0.02888 * 24 9 7 42 42 H 1.09003 * 117.49723 * 359.97438 * 25 9 7 43 43 H 1.09002 * 117.49963 * 144.97565 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4441 2.0768 -1.3989 5 1 1.4736 2.6371 0.7518 6 1 3.5719 1.4258 0.6469 7 6 2.0047 -1.1939 0.0005 8 1 1.4940 -2.1122 0.2503 9 6 3.4707 -1.2176 -0.3476 10 6 3.9127 -0.2108 -1.4114 11 7 3.0990 -0.3882 -2.6216 12 6 2.9078 -1.8155 -2.9238 13 6 1.9744 -1.9822 -4.1232 14 6 2.5464 -1.2406 -5.3380 15 6 2.7447 0.2255 -4.9569 16 1 1.7853 0.6613 -4.6778 17 6 3.3511 1.0250 -6.1092 18 6 3.3587 2.5050 -5.7189 19 7 3.8965 2.6963 -4.3793 20 6 4.0306 1.7270 -3.4679 21 8 4.4269 2.0174 -2.3591 22 6 3.7036 0.2972 -3.7654 23 1 4.6306 -0.2114 -4.0300 24 6 4.4586 -1.5373 0.7762 25 6 4.1822 -2.5718 -0.3177 26 1 -0.4850 0.8368 -0.0733 27 1 4.9630 -0.3745 -1.6526 28 1 3.7810 0.8019 -1.0304 29 1 3.8726 -2.2687 -3.1515 30 1 2.4736 -2.3130 -2.0567 31 1 1.8749 -3.0415 -4.3598 32 1 0.9945 -1.5722 -3.8789 33 1 1.8496 -1.3120 -6.1730 34 1 3.5037 -1.6796 -5.6192 35 1 2.7510 0.8856 -7.0084 36 1 4.3715 0.6884 -6.2925 37 1 2.3387 2.8881 -5.7521 38 1 3.9701 3.0589 -6.4313 39 1 4.1813 3.5899 -4.1316 40 1 5.4234 -1.0304 0.7576 41 1 4.0480 -1.7309 1.7672 42 1 3.5899 -3.4456 -0.0458 43 1 4.9648 -2.7456 -1.0563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880528356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:41 Heat of formation + Delta-G solvation = 15.558946 kcal Electronic energy + Delta-G solvation = -24148.503519 eV Core-core repulsion = 21001.967047 eV Total energy + Delta-G solvation = -3146.536472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70058 -37.96036 -37.03408 -35.53213 -32.56915 -31.94926 -31.36766 -29.06507 -26.76144 -25.23428 -23.83643 -23.47286 -21.38717 -21.28819 -19.76455 -19.13900 -18.69098 -17.05118 -16.64240 -15.78483 -15.65849 -15.08389 -14.56669 -14.34453 -14.03309 -13.87269 -13.55050 -13.22966 -13.05255 -12.76469 -12.53990 -12.10613 -11.95359 -11.93991 -11.70715 -11.19349 -10.80279 -10.67159 -10.58762 -10.43568 -10.36575 -10.15002 -9.94317 -9.39837 -9.32730 -9.19361 -8.99421 -8.86252 -8.30144 -8.06115 -7.41500 -5.91253 -3.85022 2.86802 3.41702 3.64853 3.72774 3.82017 4.40067 4.61462 4.68472 4.71352 4.82688 4.91767 5.08823 5.26128 5.35198 5.40965 5.51760 5.60028 5.61701 5.68795 5.73891 5.83180 5.95621 5.97766 6.08816 6.16324 6.24555 6.25917 6.39926 6.43780 6.55108 6.60012 6.75432 6.82811 6.88037 6.95019 7.12598 7.16875 7.27350 7.45512 7.81087 7.91871 8.03693 8.50484 8.67355 9.07114 9.76531 11.17366 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.009030 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.116420 B = 3099.915876 C = 3551.995653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.100 3.900 3 Si 0.896 3.104 4 H -0.254 1.254 5 H -0.318 1.318 6 H -0.276 1.276 7 C -0.483 4.483 8 H 0.072 0.928 9 C 0.015 3.985 10 C 0.079 3.921 11 N -0.487 5.487 12 C 0.059 3.941 13 C -0.118 4.118 14 C -0.109 4.109 15 C -0.084 4.084 16 H 0.088 0.912 17 C -0.129 4.129 18 C 0.114 3.886 19 N -0.727 5.727 20 C 0.526 3.474 21 O -0.530 6.530 22 C 0.072 3.928 23 H 0.056 0.944 24 C -0.212 4.212 25 C -0.198 4.198 26 H 0.262 0.738 27 H 0.012 0.988 28 H 0.102 0.898 29 H 0.014 0.986 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.395 0.605 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 1.704 -15.551 16.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.104 4.104 3 Si 0.729 3.271 4 H -0.179 1.179 5 H -0.248 1.248 6 H -0.202 1.202 7 C -0.519 4.519 8 H 0.090 0.910 9 C 0.013 3.987 10 C -0.047 4.047 11 N -0.212 5.212 12 C -0.068 4.068 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.103 4.103 16 H 0.107 0.893 17 C -0.167 4.167 18 C -0.010 4.010 19 N -0.381 5.381 20 C 0.312 3.688 21 O -0.405 6.405 22 C -0.040 4.040 23 H 0.073 0.927 24 C -0.250 4.250 25 C -0.235 4.235 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.119 0.881 29 H 0.032 0.968 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.079 1.919 -14.881 16.189 hybrid contribution 1.479 0.936 -0.129 1.755 sum 7.558 2.855 -15.010 17.046 Atomic orbital electron populations 1.69924 1.06670 1.27167 1.49002 1.24785 0.94229 0.99069 0.92344 0.86896 0.78227 0.82853 0.79130 1.17949 1.24810 1.20250 1.20052 0.89349 0.94942 1.47556 0.91011 1.19507 0.94157 0.91471 0.93524 1.22277 0.91610 1.01461 0.89326 1.61913 1.47178 1.11704 1.00401 1.22279 0.96818 0.88004 0.99671 1.21636 1.00777 0.99283 0.93929 1.21588 1.00669 0.94061 0.98385 1.21186 0.99742 0.96675 0.92735 0.89319 1.21850 1.02103 0.93740 0.99033 1.21291 0.99096 0.97433 0.83210 1.45470 1.66120 1.11955 1.14537 1.20005 0.77078 0.87912 0.83772 1.90740 1.45749 1.83231 1.20816 1.21315 0.96970 0.91715 0.93988 0.92694 1.23148 1.00948 1.05234 0.95678 1.22880 1.03613 0.94719 1.02295 0.92875 0.97007 0.88082 0.96784 0.86580 0.91977 0.90563 0.91813 0.92526 0.89580 0.91266 0.91805 0.91085 0.77014 0.91768 0.89749 0.90078 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.48 13.95 55.43 0.77 -26.70 16 2 C 0.10 2.95 5.32 -17.82 -0.09 2.85 16 3 Si 0.90 24.66 23.43 -169.99 -3.98 20.68 16 4 H -0.25 -6.86 5.06 56.52 0.29 -6.57 16 5 H -0.32 -8.92 7.11 56.52 0.40 -8.52 16 6 H -0.28 -7.74 6.84 56.52 0.39 -7.35 16 7 C -0.48 -13.71 7.96 -34.44 -0.27 -13.98 16 8 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 9 C 0.01 0.36 0.54 -155.66 -0.08 0.28 16 10 C 0.08 1.89 2.80 -3.82 -0.01 1.88 16 11 N -0.49 -10.41 4.18 -228.84 -0.96 -11.36 16 12 C 0.06 1.14 4.23 -3.75 -0.02 1.13 16 13 C -0.12 -1.87 6.06 -26.59 -0.16 -2.03 16 14 C -0.11 -1.39 5.45 -26.65 -0.15 -1.53 16 15 C -0.08 -1.17 2.06 -90.78 -0.19 -1.36 16 16 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 17 C -0.13 -1.26 5.46 -26.80 -0.15 -1.41 16 18 C 0.11 1.11 7.13 -4.48 -0.03 1.08 16 19 N -0.73 -10.04 5.44 -61.50 -0.33 -10.37 16 20 C 0.53 9.74 7.09 -11.96 -0.08 9.66 16 21 O -0.53 -12.00 12.22 5.56 0.07 -11.93 16 22 C 0.07 1.28 1.64 -69.58 -0.11 1.16 16 23 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 24 C -0.21 -4.85 9.96 -26.69 -0.27 -5.11 16 25 C -0.20 -4.22 8.31 -26.69 -0.22 -4.45 16 26 H 0.26 7.71 8.32 -40.82 -0.34 7.37 16 27 H 0.01 0.27 7.96 -51.93 -0.41 -0.14 16 28 H 0.10 2.65 1.10 -51.93 -0.06 2.59 16 29 H 0.01 0.25 8.12 -51.93 -0.42 -0.17 16 30 H 0.12 2.58 4.92 -51.93 -0.26 2.33 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.40 4.92 8.81 -40.82 -0.36 4.56 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 42 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -33.60 313.37 -8.66 -42.26 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.11 Total: 4.55 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -1.84 Total: -11.84 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.52 Total: -48.44 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -3.98 Total: 20.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.60 -8.66 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880528356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.817 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds