Wall clock time and date at job start Tue Mar 31 2020 00:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99519 * 2 1 4 4 H 1.48507 * 109.46766 * 272.47624 * 3 2 1 5 5 H 1.48502 * 109.47196 * 32.47496 * 3 2 1 6 6 H 1.48497 * 109.47155 * 152.48025 * 3 2 1 7 7 C 1.37873 * 120.00826 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99384 * 344.53843 * 7 2 1 9 9 C 1.50696 * 120.00465 * 164.52658 * 7 2 1 10 10 C 1.52997 * 115.55051 * 325.17371 * 9 7 2 11 11 N 1.46903 * 109.47041 * 305.20279 * 10 9 7 12 12 C 1.47142 * 110.99722 * 317.84390 * 11 10 9 13 13 C 1.52892 * 110.25474 * 175.79195 * 12 11 10 14 14 C 1.53383 * 109.93194 * 57.58397 * 13 12 11 15 15 C 1.52776 * 108.34958 * 303.06552 * 14 13 12 16 16 H 1.09001 * 109.47085 * 299.64204 * 15 14 13 17 17 C 1.52801 * 111.43752 * 178.41348 * 15 14 13 18 18 C 1.53063 * 108.39695 * 173.08749 * 17 15 14 19 19 N 1.45620 * 111.31040 * 47.85260 * 18 17 15 20 20 C 1.33720 * 124.66882 * 343.15932 * 19 18 17 21 21 O 1.21279 * 118.83602 * 183.80519 * 20 19 18 22 22 C 1.46409 * 110.99844 * 194.76489 * 11 10 9 23 23 H 1.08997 * 108.80499 * 68.05595 * 22 11 10 24 24 C 1.53006 * 117.49705 * 110.83677 * 9 7 2 25 25 C 1.53001 * 117.50242 * 179.49787 * 9 7 2 26 26 H 0.96995 * 120.00010 * 5.00302 * 1 2 3 27 27 H 1.09002 * 109.47337 * 185.20422 * 10 9 7 28 28 H 1.08999 * 109.47771 * 65.20403 * 10 9 7 29 29 H 1.08993 * 109.34182 * 296.03221 * 12 11 10 30 30 H 1.09000 * 109.33771 * 55.55375 * 12 11 10 31 31 H 1.09000 * 109.38594 * 177.72068 * 13 12 11 32 32 H 1.09000 * 109.38843 * 297.52738 * 13 12 11 33 33 H 1.08994 * 109.67073 * 183.35952 * 14 13 12 34 34 H 1.09003 * 109.70096 * 62.78943 * 14 13 12 35 35 H 1.09002 * 109.67812 * 53.36066 * 17 15 14 36 36 H 1.09004 * 109.67808 * 292.81717 * 17 15 14 37 37 H 1.09003 * 109.11097 * 287.38070 * 18 17 15 38 38 H 1.08999 * 109.11469 * 168.32256 * 18 17 15 39 39 H 0.97001 * 117.66506 * 162.88057 * 19 18 17 40 40 H 1.09001 * 117.50092 * 215.00523 * 24 9 7 41 41 H 1.09001 * 117.49590 * 0.02888 * 24 9 7 42 42 H 1.09003 * 117.49723 * 359.97438 * 25 9 7 43 43 H 1.09002 * 117.49963 * 144.97565 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4441 2.0768 -1.3989 5 1 1.4736 2.6371 0.7518 6 1 3.5719 1.4258 0.6469 7 6 2.0047 -1.1939 0.0005 8 1 1.4940 -2.1122 0.2503 9 6 3.4707 -1.2176 -0.3476 10 6 3.9127 -0.2108 -1.4114 11 7 3.0990 -0.3882 -2.6216 12 6 2.9078 -1.8155 -2.9238 13 6 1.9744 -1.9822 -4.1232 14 6 2.5464 -1.2406 -5.3380 15 6 2.7447 0.2255 -4.9569 16 1 1.7853 0.6613 -4.6778 17 6 3.3511 1.0250 -6.1092 18 6 3.3587 2.5050 -5.7189 19 7 3.8965 2.6963 -4.3793 20 6 4.0306 1.7270 -3.4679 21 8 4.4269 2.0174 -2.3591 22 6 3.7036 0.2972 -3.7654 23 1 4.6306 -0.2114 -4.0300 24 6 4.4586 -1.5373 0.7762 25 6 4.1822 -2.5718 -0.3177 26 1 -0.4850 0.8368 -0.0733 27 1 4.9630 -0.3745 -1.6526 28 1 3.7810 0.8019 -1.0304 29 1 3.8726 -2.2687 -3.1515 30 1 2.4736 -2.3130 -2.0567 31 1 1.8749 -3.0415 -4.3598 32 1 0.9945 -1.5722 -3.8789 33 1 1.8496 -1.3120 -6.1730 34 1 3.5037 -1.6796 -5.6192 35 1 2.7510 0.8856 -7.0084 36 1 4.3715 0.6884 -6.2925 37 1 2.3387 2.8881 -5.7521 38 1 3.9701 3.0589 -6.4313 39 1 4.1813 3.5899 -4.1316 40 1 5.4234 -1.0304 0.7576 41 1 4.0480 -1.7309 1.7672 42 1 3.5899 -3.4456 -0.0458 43 1 4.9648 -2.7456 -1.0563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880528356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:40 Heat of formation + Delta-G solvation = -10.235665 kcal Electronic energy + Delta-G solvation = -24149.622057 eV Core-core repulsion = 21001.967047 eV Total energy + Delta-G solvation = -3147.655010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00419 -39.53916 -38.42030 -36.90479 -34.22372 -33.93250 -32.56406 -30.23731 -28.46400 -27.16530 -24.98633 -24.89431 -23.09698 -22.57908 -21.10947 -20.71959 -20.18770 -18.44084 -18.21901 -17.58865 -17.16576 -16.53404 -15.94830 -15.66763 -15.46379 -15.39774 -15.07379 -14.80629 -14.43262 -14.32071 -13.92783 -13.82206 -13.67183 -13.18754 -12.84474 -12.56578 -12.50882 -12.29332 -12.20322 -12.01748 -11.79867 -11.67532 -11.50493 -11.25327 -11.17104 -10.96095 -10.64594 -10.37187 -10.05750 -9.94033 -8.99181 -8.23234 -6.15180 1.38244 1.45556 1.52605 1.62370 2.31065 2.44654 2.85509 3.15363 3.51329 3.57463 3.71936 3.81399 3.95230 4.08518 4.21413 4.26250 4.32790 4.39031 4.45189 4.49063 4.54499 4.64892 4.75137 4.82976 4.85281 4.88940 4.95163 5.03462 5.07350 5.08368 5.17080 5.19896 5.28271 5.34464 5.45907 5.52922 5.60302 5.77293 5.87128 6.22492 6.26468 6.39220 6.48507 6.78991 7.22557 7.46802 8.89379 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.009030 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.116420 B = 3099.915876 C = 3551.995653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.062 3.938 3 Si 0.951 3.049 4 H -0.249 1.249 5 H -0.330 1.330 6 H -0.287 1.287 7 C -0.469 4.469 8 H 0.039 0.961 9 C -0.016 4.016 10 C 0.088 3.912 11 N -0.512 5.512 12 C 0.062 3.938 13 C -0.116 4.116 14 C -0.099 4.099 15 C -0.081 4.081 16 H 0.062 0.938 17 C -0.120 4.120 18 C 0.104 3.896 19 N -0.716 5.716 20 C 0.513 3.487 21 O -0.584 6.584 22 C 0.066 3.934 23 H 0.066 0.934 24 C -0.212 4.212 25 C -0.165 4.165 26 H 0.261 0.739 27 H 0.014 0.986 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.401 0.599 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 1.583 -19.085 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.137 4.137 3 Si 0.785 3.215 4 H -0.175 1.175 5 H -0.261 1.261 6 H -0.214 1.214 7 C -0.506 4.506 8 H 0.057 0.943 9 C -0.017 4.017 10 C -0.038 4.038 11 N -0.237 5.237 12 C -0.065 4.065 13 C -0.154 4.154 14 C -0.137 4.137 15 C -0.100 4.100 16 H 0.080 0.920 17 C -0.158 4.158 18 C -0.018 4.018 19 N -0.367 5.367 20 C 0.300 3.700 21 O -0.464 6.464 22 C -0.046 4.046 23 H 0.083 0.917 24 C -0.250 4.250 25 C -0.202 4.202 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.236 0.764 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.725 1.804 -18.479 20.110 hybrid contribution 0.983 0.909 0.950 1.641 sum 8.707 2.713 -17.529 19.760 Atomic orbital electron populations 1.70005 1.07723 1.27524 1.51786 1.25219 0.94518 1.01055 0.92953 0.86062 0.76251 0.80344 0.78889 1.17458 1.26134 1.21436 1.20151 0.91454 0.93203 1.45790 0.94284 1.19481 0.92325 0.94648 0.95278 1.22014 0.92030 0.99525 0.90258 1.61821 1.47633 1.13158 1.01109 1.22185 0.97938 0.86800 0.99614 1.21607 0.98512 1.01046 0.94205 1.21558 1.02163 0.92559 0.97386 1.21224 0.97759 0.98250 0.92762 0.91957 1.21880 1.03106 0.92542 0.98259 1.21693 1.00196 0.98420 0.81539 1.45515 1.64435 1.11310 1.15456 1.20325 0.76768 0.89058 0.83810 1.90705 1.48484 1.84085 1.23114 1.21510 0.98291 0.90990 0.93816 0.91667 1.23164 1.00798 1.05782 0.95304 1.22854 1.02795 0.93122 1.01408 0.92956 0.96750 0.90387 0.95294 0.90436 0.89874 0.93609 0.88848 0.90520 0.86105 0.89981 0.91082 0.87084 0.76359 0.90256 0.90349 0.89926 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.67 13.95 21.45 0.30 -59.38 16 2 C 0.06 3.81 5.32 84.65 0.45 4.26 16 3 Si 0.95 53.41 23.43 68.60 1.61 55.02 16 4 H -0.25 -13.71 5.06 99.48 0.50 -13.21 16 5 H -0.33 -18.84 7.11 99.48 0.71 -18.13 16 6 H -0.29 -16.40 6.84 99.48 0.68 -15.72 16 7 C -0.47 -27.55 7.96 25.60 0.20 -27.34 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 9 C -0.02 -0.80 0.54 -52.93 -0.03 -0.83 16 10 C 0.09 4.22 2.80 86.30 0.24 4.46 16 11 N -0.51 -21.74 4.18 -877.92 -3.67 -25.41 16 12 C 0.06 2.32 4.23 86.22 0.36 2.69 16 13 C -0.12 -3.48 6.06 30.69 0.19 -3.30 16 14 C -0.10 -2.13 5.45 30.65 0.17 -1.97 16 15 C -0.08 -2.00 2.06 -10.90 -0.02 -2.02 16 16 H 0.06 1.88 8.11 -2.39 -0.02 1.86 16 17 C -0.12 -1.75 5.46 30.55 0.17 -1.58 16 18 C 0.10 1.58 7.13 86.57 0.62 2.20 16 19 N -0.72 -18.10 5.44 -467.47 -2.54 -20.64 16 20 C 0.51 18.47 7.09 87.50 0.62 19.09 16 21 O -0.58 -26.52 12.22 -3.03 -0.04 -26.56 16 22 C 0.07 2.21 1.64 43.97 0.07 2.28 16 23 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 24 C -0.21 -9.58 9.96 30.62 0.30 -9.28 16 25 C -0.16 -6.83 8.31 30.62 0.25 -6.58 16 26 H 0.26 16.02 8.32 -92.71 -0.77 15.25 16 27 H 0.01 0.66 7.96 -2.39 -0.02 0.64 16 28 H 0.08 4.15 1.10 -2.39 0.00 4.14 16 29 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 30 H 0.08 3.50 4.92 -2.39 -0.01 3.49 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.06 8.12 -2.38 -0.02 1.04 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.40 9.24 8.81 -92.71 -0.82 8.42 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.09 3.35 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -77.75 313.37 -0.79 -78.54 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.05 Total: 16.37 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 3.60 Total: -17.93 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -5.91 Total: -105.43 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.56 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 1.61 Total: 55.02 kcal Total: -77.75 -0.79 -78.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880528356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.301 kcal (2) G-P(sol) polarization free energy of solvation -77.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds