Wall clock time and date at job start Tue Mar 31 2020 00:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47320 * 355.00019 * 3 2 1 5 5 H 1.48503 * 109.46801 * 235.00226 * 3 2 1 6 6 H 1.48500 * 109.47217 * 115.00485 * 3 2 1 7 7 C 1.37879 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99850 * 185.52124 * 7 2 1 9 9 C 1.50702 * 120.00014 * 5.52243 * 7 2 1 10 10 C 1.52995 * 115.54977 * 68.15004 * 9 7 2 11 11 N 1.46896 * 109.47386 * 55.12327 * 10 9 7 12 12 C 1.47138 * 110.99645 * 42.07113 * 11 10 9 13 13 C 1.52890 * 110.25299 * 184.22141 * 12 11 10 14 14 C 1.53379 * 109.93759 * 302.41121 * 13 12 11 15 15 C 1.52789 * 108.35458 * 56.91829 * 14 13 12 16 16 H 1.08998 * 109.45361 * 60.39714 * 15 14 13 17 17 C 1.52791 * 111.43582 * 181.60006 * 15 14 13 18 18 C 1.53064 * 108.39264 * 186.94232 * 17 15 14 19 19 N 1.45619 * 111.31362 * 312.16446 * 18 17 15 20 20 C 1.33717 * 124.67356 * 17.12052 * 19 18 17 21 21 O 1.21279 * 118.83919 * 175.91360 * 20 19 18 22 22 C 1.46400 * 111.00131 * 165.16760 * 11 10 9 23 23 H 1.08998 * 108.80448 * 291.14170 * 22 11 10 24 24 C 1.53002 * 117.49836 * 282.44136 * 9 7 2 25 25 C 1.52995 * 117.49679 * 213.82166 * 9 7 2 26 26 H 0.97003 * 119.99951 * 183.19219 * 1 2 3 27 27 H 1.09006 * 109.47042 * 175.12748 * 10 9 7 28 28 H 1.09008 * 109.47312 * 295.12148 * 10 9 7 29 29 H 1.09004 * 109.34224 * 304.45753 * 12 11 10 30 30 H 1.08993 * 109.34302 * 63.98340 * 12 11 10 31 31 H 1.08993 * 109.39596 * 182.27204 * 13 12 11 32 32 H 1.09003 * 109.39138 * 62.55207 * 13 12 11 33 33 H 1.09002 * 109.69440 * 297.20279 * 14 13 12 34 34 H 1.09007 * 109.72410 * 176.64670 * 14 13 12 35 35 H 1.08998 * 109.67929 * 67.21647 * 17 15 14 36 36 H 1.08996 * 109.67538 * 306.67286 * 17 15 14 37 37 H 1.08997 * 109.11058 * 191.68806 * 18 17 15 38 38 H 1.09006 * 109.06053 * 72.60232 * 18 17 15 39 39 H 0.97004 * 117.65820 * 197.10155 * 19 18 17 40 40 H 1.09004 * 117.49687 * 0.02562 * 24 9 7 41 41 H 1.08994 * 117.50097 * 145.01697 * 24 9 7 42 42 H 1.09006 * 117.49816 * 214.98234 * 25 9 7 43 43 H 1.09000 * 117.50226 * 359.97299 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2888 2.7438 -0.1220 5 1 3.1920 1.6449 -1.1470 6 1 3.0091 1.7505 1.2688 7 6 2.0045 -1.1941 0.0005 8 1 3.0808 -1.1962 0.0905 9 6 1.2562 -2.4962 -0.1245 10 6 0.5915 -2.7478 -1.4793 11 7 1.5965 -2.6405 -2.5453 12 6 2.8534 -3.2971 -2.1529 13 6 3.9192 -3.0856 -3.2286 14 6 3.4194 -3.6272 -4.5737 15 6 2.1042 -2.9285 -4.9150 16 1 2.2729 -1.8543 -4.9911 17 6 1.5214 -3.4463 -6.2290 18 6 0.3083 -2.5862 -6.5915 19 7 -0.5823 -2.4200 -5.4514 20 6 -0.2419 -2.6543 -4.1797 21 8 -1.0450 -2.4094 -3.3045 22 6 1.0952 -3.2087 -3.7981 23 1 1.0080 -4.2891 -3.6838 24 6 0.5424 -3.0233 1.1220 25 6 1.8167 -3.7076 0.6233 26 1 -0.4850 -0.8388 0.0468 27 1 0.1555 -3.7468 -1.4902 28 1 -0.1920 -2.0077 -1.6427 29 1 3.2026 -2.8745 -1.2108 30 1 2.6779 -4.3650 -2.0238 31 1 4.8306 -3.6108 -2.9432 32 1 4.1313 -2.0207 -3.3235 33 1 3.2553 -4.7022 -4.4988 34 1 4.1566 -3.4216 -5.3499 35 1 1.2126 -4.4848 -6.1097 36 1 2.2713 -3.3740 -7.0168 37 1 -0.2381 -3.0643 -7.4044 38 1 0.6526 -1.6059 -6.9212 39 1 -1.4870 -2.1174 -5.6271 40 1 0.6136 -2.4279 2.0323 41 1 -0.4012 -3.5492 0.9770 42 1 1.7115 -4.6840 0.1502 43 1 2.7268 -3.5629 1.2054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880528357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:43 Heat of formation + Delta-G solvation = -6.711059 kcal Electronic energy + Delta-G solvation = -23746.624933 eV Core-core repulsion = 20599.122761 eV Total energy + Delta-G solvation = -3147.502171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61738 -37.89465 -36.96638 -35.53925 -32.53989 -31.71862 -31.37471 -29.00933 -26.22013 -24.84317 -23.75577 -23.48636 -21.37680 -21.23377 -19.79204 -19.15128 -18.86914 -16.98439 -16.72851 -15.82362 -15.36218 -14.77112 -14.38159 -14.13517 -14.04418 -13.71515 -13.60323 -13.23538 -13.07455 -12.67552 -12.54785 -12.28318 -11.95637 -11.69584 -11.44157 -11.04954 -10.79378 -10.70035 -10.66146 -10.52375 -10.36231 -10.30180 -9.99556 -9.95086 -9.31485 -9.05400 -8.86904 -8.37988 -8.23836 -7.98815 -7.37059 -6.09578 -3.80804 2.94106 3.45089 3.53972 3.58534 3.75507 4.43590 4.61815 4.68987 4.69695 4.85030 4.96743 5.22729 5.29507 5.34578 5.40962 5.47989 5.58381 5.62328 5.67364 5.74241 5.84881 5.94351 6.01435 6.08778 6.15791 6.22023 6.31666 6.39077 6.51831 6.60836 6.64769 6.75818 6.79136 6.95873 6.96959 7.19324 7.35106 7.46382 7.64103 7.98762 8.01428 8.47197 8.57803 8.64386 9.10341 9.91187 11.29034 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.007125 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.229032 B = 3928.971581 C = 4085.106496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.554 4.554 8 H 0.048 0.952 9 C 0.032 3.968 10 C 0.096 3.904 11 N -0.488 5.488 12 C 0.058 3.942 13 C -0.119 4.119 14 C -0.110 4.110 15 C -0.085 4.085 16 H 0.087 0.913 17 C -0.129 4.129 18 C 0.115 3.885 19 N -0.728 5.728 20 C 0.526 3.474 21 O -0.523 6.523 22 C 0.074 3.926 23 H 0.053 0.947 24 C -0.191 4.191 25 C -0.204 4.204 26 H 0.275 0.725 27 H -0.004 1.004 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.013 0.987 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -7.899 -14.241 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.174 4.174 3 Si 0.892 3.108 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.592 4.592 8 H 0.066 0.934 9 C 0.031 3.969 10 C -0.030 4.030 11 N -0.213 5.213 12 C -0.070 4.070 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.104 4.104 16 H 0.106 0.894 17 C -0.167 4.167 18 C -0.010 4.010 19 N -0.382 5.382 20 C 0.312 3.688 21 O -0.398 6.398 22 C -0.039 4.039 23 H 0.070 0.930 24 C -0.230 4.230 25 C -0.241 4.241 26 H 0.087 0.913 27 H 0.014 0.986 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.290 -5.690 -13.828 15.556 hybrid contribution -0.322 -2.604 0.008 2.624 sum 3.967 -8.293 -13.820 16.599 Atomic orbital electron populations 1.70680 1.06827 1.31372 1.44816 1.25555 0.96510 1.01822 0.93513 0.83654 0.74986 0.76003 0.76134 1.21110 1.21513 1.21941 1.21019 0.93179 0.89630 1.55334 0.93395 1.19287 0.97036 0.92825 0.87762 1.22079 0.93539 0.97903 0.89509 1.61925 1.04254 1.54030 1.01057 1.22263 0.89669 0.95088 0.99973 1.21650 0.97830 1.02024 0.94202 1.21583 0.95888 0.99257 0.97985 1.21202 0.94785 1.02035 0.92402 0.89442 1.21844 0.96986 0.99644 0.98266 1.21272 0.91664 1.00065 0.87975 1.45491 1.16378 1.70183 1.06158 1.20001 0.89653 0.77202 0.81900 1.90776 1.52059 1.50573 1.46374 1.21295 0.91438 0.96970 0.94158 0.92980 1.22896 0.93590 1.04629 1.01837 1.22881 0.97427 0.96523 1.07272 0.91310 0.98597 0.87302 0.87334 0.96870 0.92093 0.90927 0.92509 0.91833 0.91309 0.89685 0.91128 0.91861 0.76945 0.90049 0.91917 0.92036 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.36 55.43 0.74 -27.23 16 2 C 0.03 0.93 5.42 -17.82 -0.10 0.84 16 3 Si 1.06 26.04 29.91 -169.99 -5.08 20.95 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.55 -15.44 7.46 -34.44 -0.26 -15.70 16 8 H 0.05 1.34 7.45 -52.49 -0.39 0.95 16 9 C 0.03 0.80 0.10 -155.66 -0.02 0.79 16 10 C 0.10 2.38 3.76 -3.83 -0.01 2.37 16 11 N -0.49 -10.48 4.53 -228.83 -1.04 -11.52 16 12 C 0.06 1.10 4.22 -3.75 -0.02 1.08 16 13 C -0.12 -1.81 6.06 -26.59 -0.16 -1.97 16 14 C -0.11 -1.35 5.44 -26.64 -0.14 -1.50 16 15 C -0.09 -1.15 2.06 -90.78 -0.19 -1.34 16 16 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 17 C -0.13 -1.25 5.46 -26.81 -0.15 -1.39 16 18 C 0.11 1.10 7.13 -4.48 -0.03 1.07 16 19 N -0.73 -9.96 5.44 -61.49 -0.33 -10.30 16 20 C 0.53 9.83 7.56 -11.94 -0.09 9.74 16 21 O -0.52 -12.27 14.01 5.56 0.08 -12.19 16 22 C 0.07 1.30 1.66 -69.57 -0.12 1.19 16 23 H 0.05 0.91 8.07 -51.93 -0.42 0.50 16 24 C -0.19 -4.67 9.34 -26.73 -0.25 -4.92 16 25 C -0.20 -4.57 8.27 -26.74 -0.22 -4.79 16 26 H 0.28 8.65 5.99 -40.82 -0.24 8.40 16 27 H 0.00 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.11 3.11 4.76 -51.92 -0.25 2.87 16 29 H 0.11 2.37 4.69 -51.93 -0.24 2.13 16 30 H 0.01 0.24 8.10 -51.93 -0.42 -0.18 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.40 4.94 8.81 -40.82 -0.36 4.58 16 40 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 41 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -33.26 324.13 -9.53 -42.79 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.03 Total: 7.15 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.75 Total: -14.53 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.63 Total: -49.05 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.26 -9.53 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880528357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.075 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds