Wall clock time and date at job start Tue Mar 31 2020 00:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47320 * 355.00019 * 3 2 1 5 5 H 1.48503 * 109.46801 * 235.00226 * 3 2 1 6 6 H 1.48500 * 109.47217 * 115.00485 * 3 2 1 7 7 C 1.37879 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99850 * 185.52124 * 7 2 1 9 9 C 1.50702 * 120.00014 * 5.52243 * 7 2 1 10 10 C 1.52995 * 115.54977 * 68.15004 * 9 7 2 11 11 N 1.46896 * 109.47386 * 55.12327 * 10 9 7 12 12 C 1.47138 * 110.99645 * 42.07113 * 11 10 9 13 13 C 1.52890 * 110.25299 * 184.22141 * 12 11 10 14 14 C 1.53379 * 109.93759 * 302.41121 * 13 12 11 15 15 C 1.52789 * 108.35458 * 56.91829 * 14 13 12 16 16 H 1.08998 * 109.45361 * 60.39714 * 15 14 13 17 17 C 1.52791 * 111.43582 * 181.60006 * 15 14 13 18 18 C 1.53064 * 108.39264 * 186.94232 * 17 15 14 19 19 N 1.45619 * 111.31362 * 312.16446 * 18 17 15 20 20 C 1.33717 * 124.67356 * 17.12052 * 19 18 17 21 21 O 1.21279 * 118.83919 * 175.91360 * 20 19 18 22 22 C 1.46400 * 111.00131 * 165.16760 * 11 10 9 23 23 H 1.08998 * 108.80448 * 291.14170 * 22 11 10 24 24 C 1.53002 * 117.49836 * 282.44136 * 9 7 2 25 25 C 1.52995 * 117.49679 * 213.82166 * 9 7 2 26 26 H 0.97003 * 119.99951 * 183.19219 * 1 2 3 27 27 H 1.09006 * 109.47042 * 175.12748 * 10 9 7 28 28 H 1.09008 * 109.47312 * 295.12148 * 10 9 7 29 29 H 1.09004 * 109.34224 * 304.45753 * 12 11 10 30 30 H 1.08993 * 109.34302 * 63.98340 * 12 11 10 31 31 H 1.08993 * 109.39596 * 182.27204 * 13 12 11 32 32 H 1.09003 * 109.39138 * 62.55207 * 13 12 11 33 33 H 1.09002 * 109.69440 * 297.20279 * 14 13 12 34 34 H 1.09007 * 109.72410 * 176.64670 * 14 13 12 35 35 H 1.08998 * 109.67929 * 67.21647 * 17 15 14 36 36 H 1.08996 * 109.67538 * 306.67286 * 17 15 14 37 37 H 1.08997 * 109.11058 * 191.68806 * 18 17 15 38 38 H 1.09006 * 109.06053 * 72.60232 * 18 17 15 39 39 H 0.97004 * 117.65820 * 197.10155 * 19 18 17 40 40 H 1.09004 * 117.49687 * 0.02562 * 24 9 7 41 41 H 1.08994 * 117.50097 * 145.01697 * 24 9 7 42 42 H 1.09006 * 117.49816 * 214.98234 * 25 9 7 43 43 H 1.09000 * 117.50226 * 359.97299 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2888 2.7438 -0.1220 5 1 3.1920 1.6449 -1.1470 6 1 3.0091 1.7505 1.2688 7 6 2.0045 -1.1941 0.0005 8 1 3.0808 -1.1962 0.0905 9 6 1.2562 -2.4962 -0.1245 10 6 0.5915 -2.7478 -1.4793 11 7 1.5965 -2.6405 -2.5453 12 6 2.8534 -3.2971 -2.1529 13 6 3.9192 -3.0856 -3.2286 14 6 3.4194 -3.6272 -4.5737 15 6 2.1042 -2.9285 -4.9150 16 1 2.2729 -1.8543 -4.9911 17 6 1.5214 -3.4463 -6.2290 18 6 0.3083 -2.5862 -6.5915 19 7 -0.5823 -2.4200 -5.4514 20 6 -0.2419 -2.6543 -4.1797 21 8 -1.0450 -2.4094 -3.3045 22 6 1.0952 -3.2087 -3.7981 23 1 1.0080 -4.2891 -3.6838 24 6 0.5424 -3.0233 1.1220 25 6 1.8167 -3.7076 0.6233 26 1 -0.4850 -0.8388 0.0468 27 1 0.1555 -3.7468 -1.4902 28 1 -0.1920 -2.0077 -1.6427 29 1 3.2026 -2.8745 -1.2108 30 1 2.6779 -4.3650 -2.0238 31 1 4.8306 -3.6108 -2.9432 32 1 4.1313 -2.0207 -3.3235 33 1 3.2553 -4.7022 -4.4988 34 1 4.1566 -3.4216 -5.3499 35 1 1.2126 -4.4848 -6.1097 36 1 2.2713 -3.3740 -7.0168 37 1 -0.2381 -3.0643 -7.4044 38 1 0.6526 -1.6059 -6.9212 39 1 -1.4870 -2.1174 -5.6271 40 1 0.6136 -2.4279 2.0323 41 1 -0.4012 -3.5492 0.9770 42 1 1.7115 -4.6840 0.1502 43 1 2.7268 -3.5629 1.2054 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880528357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:42 Heat of formation + Delta-G solvation = -30.950826 kcal Electronic energy + Delta-G solvation = -23747.676048 eV Core-core repulsion = 20599.122761 eV Total energy + Delta-G solvation = -3148.553287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.95253 -39.52882 -38.43645 -36.94694 -34.00156 -33.84437 -32.57527 -30.18713 -27.80236 -26.95363 -24.95392 -24.93317 -23.12321 -22.65103 -21.15321 -20.88362 -20.19998 -18.60751 -18.19018 -17.36223 -16.72285 -16.09332 -15.85523 -15.61825 -15.60366 -15.38095 -15.01548 -14.71773 -14.48154 -14.27658 -14.10872 -13.82393 -13.23695 -12.97523 -12.81189 -12.66318 -12.56651 -12.27795 -12.26003 -12.05544 -11.93690 -11.77608 -11.53430 -11.39838 -10.99661 -10.70816 -10.42584 -10.24729 -10.08016 -9.93473 -9.03046 -8.39036 -6.09424 1.52754 1.53643 1.63633 1.80530 2.29969 2.65722 2.98962 3.33025 3.44752 3.54728 3.70805 3.80598 3.95077 4.11101 4.18189 4.25355 4.34251 4.36229 4.44739 4.49698 4.56525 4.61128 4.72612 4.77241 4.83630 4.89880 4.93977 5.00789 5.03603 5.06677 5.15486 5.25147 5.30632 5.37124 5.46326 5.52438 5.61454 5.90996 6.15395 6.23680 6.31614 6.45251 6.48964 6.81547 7.25396 7.69794 8.98744 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.007125 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.229032 B = 3928.971581 C = 4085.106496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.021 4.021 3 Si 1.106 2.894 4 H -0.293 1.293 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.044 0.956 9 C 0.008 3.992 10 C 0.117 3.883 11 N -0.509 5.509 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.101 4.101 15 C -0.079 4.079 16 H 0.069 0.931 17 C -0.121 4.121 18 C 0.104 3.896 19 N -0.714 5.714 20 C 0.513 3.487 21 O -0.587 6.587 22 C 0.068 3.932 23 H 0.055 0.945 24 C -0.202 4.202 25 C -0.169 4.169 26 H 0.259 0.741 27 H -0.015 1.015 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.017 0.983 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -9.047 -17.223 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.220 4.220 3 Si 0.930 3.070 4 H -0.219 1.219 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.063 0.937 9 C 0.007 3.993 10 C -0.011 4.011 11 N -0.234 5.234 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.138 4.138 15 C -0.099 4.099 16 H 0.087 0.913 17 C -0.159 4.159 18 C -0.018 4.018 19 N -0.366 5.366 20 C 0.300 3.700 21 O -0.468 6.468 22 C -0.044 4.044 23 H 0.072 0.928 24 C -0.240 4.240 25 C -0.206 4.206 26 H 0.070 0.930 27 H 0.003 0.997 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.236 0.764 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.823 -6.864 -16.872 19.451 hybrid contribution -1.102 -2.298 0.886 2.698 sum 5.721 -9.162 -15.987 19.294 Atomic orbital electron populations 1.70799 1.07959 1.30393 1.47927 1.26886 0.96499 1.05529 0.93086 0.83090 0.74188 0.72195 0.77523 1.21910 1.19815 1.19803 1.21247 0.93044 0.90730 1.53581 0.93747 1.19334 0.98135 0.93404 0.88439 1.21609 0.93401 0.95702 0.90347 1.61824 1.04343 1.55714 1.01489 1.22222 0.89642 0.94652 1.00301 1.21634 0.97322 1.01649 0.94745 1.21576 0.95692 0.99596 0.96983 1.21245 0.94436 1.01435 0.92740 0.91269 1.21885 0.97544 0.99641 0.96799 1.21710 0.91698 1.01456 0.86981 1.45518 1.17360 1.67962 1.05721 1.20384 0.89603 0.77072 0.82912 1.90759 1.53714 1.53618 1.48660 1.21481 0.92392 0.96639 0.93853 0.92767 1.22836 0.94979 1.05293 1.00905 1.22840 0.96331 0.96245 1.05220 0.93043 0.99704 0.91573 0.90581 0.96433 0.89694 0.92531 0.91160 0.88299 0.90499 0.85792 0.87232 0.90626 0.76412 0.91606 0.91532 0.89964 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.68 13.36 21.45 0.29 -60.39 16 2 C -0.02 -1.24 5.42 84.66 0.46 -0.78 16 3 Si 1.11 53.30 29.91 68.60 2.05 55.35 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.55 -31.38 7.46 25.60 0.19 -31.18 16 8 H 0.04 2.51 7.45 -2.91 -0.02 2.49 16 9 C 0.01 0.40 0.10 -52.93 -0.01 0.40 16 10 C 0.12 6.09 3.76 86.30 0.32 6.41 16 11 N -0.51 -22.29 4.53 -877.88 -3.98 -26.26 16 12 C 0.06 2.22 4.22 86.22 0.36 2.59 16 13 C -0.12 -3.23 6.06 30.68 0.19 -3.04 16 14 C -0.10 -2.07 5.44 30.65 0.17 -1.91 16 15 C -0.08 -1.92 2.06 -10.90 -0.02 -1.94 16 16 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 17 C -0.12 -1.75 5.46 30.55 0.17 -1.59 16 18 C 0.10 1.58 7.13 86.57 0.62 2.20 16 19 N -0.71 -18.73 5.44 -467.43 -2.54 -21.28 16 20 C 0.51 19.57 7.56 87.51 0.66 20.23 16 21 O -0.59 -29.36 14.01 -3.03 -0.04 -29.41 16 22 C 0.07 2.39 1.66 43.99 0.07 2.46 16 23 H 0.05 1.86 8.07 -2.39 -0.02 1.85 16 24 C -0.20 -10.20 9.34 30.59 0.29 -9.92 16 25 C -0.17 -7.60 8.27 30.59 0.25 -7.35 16 26 H 0.26 17.35 5.99 -92.71 -0.56 16.79 16 27 H -0.02 -0.79 7.96 -2.38 -0.02 -0.80 16 28 H 0.07 4.07 4.76 -2.38 -0.01 4.05 16 29 H 0.08 3.33 4.69 -2.39 -0.01 3.32 16 30 H 0.02 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.40 9.78 8.81 -92.70 -0.82 8.96 16 40 H 0.07 3.48 8.14 -2.38 -0.02 3.46 16 41 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 43 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 Total: -1.00 -78.86 324.13 -0.11 -78.97 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.39 Total: 26.43 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.72 Total: -23.42 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -6.23 Total: -107.93 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.04 Total: -29.41 kcal Atomic # 14 Polarization: 53.30 SS G_CDS: 2.05 Total: 55.35 kcal Total: -78.86 -0.11 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880528357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.017 kcal (2) G-P(sol) polarization free energy of solvation -78.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds