Wall clock time and date at job start Tue Mar 31 2020 00:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48504 * 109.46996 * 90.00151 * 3 2 1 5 5 H 1.48503 * 109.47366 * 330.00256 * 3 2 1 6 6 H 1.48501 * 109.47429 * 210.00161 * 3 2 1 7 7 C 1.37876 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00169 * 186.16200 * 7 2 1 9 9 C 1.50705 * 119.99804 * 6.15780 * 7 2 1 10 10 C 1.53001 * 115.54998 * 273.80356 * 9 7 2 11 11 N 1.46898 * 109.47194 * 298.96723 * 10 9 7 12 12 C 1.46812 * 111.00011 * 287.65648 * 11 10 9 13 13 C 1.53117 * 109.12283 * 174.15415 * 12 11 10 14 14 C 1.53011 * 109.01296 * 60.33778 * 13 12 11 15 15 C 1.53208 * 109.54415 * 301.58149 * 14 13 12 16 16 H 1.09003 * 110.67765 * 294.20544 * 15 14 13 17 17 C 1.53665 * 108.35094 * 173.41889 * 15 14 13 18 18 C 1.52911 * 108.49643 * 309.00264 * 17 15 14 19 19 N 1.45732 * 110.76073 * 309.49810 * 18 17 15 20 20 C 1.33545 * 124.04155 * 18.75684 * 19 18 17 21 21 O 1.21282 * 118.44076 * 177.47093 * 20 19 18 22 22 C 1.46162 * 111.00071 * 162.55766 * 11 10 9 23 23 H 1.09000 * 108.24666 * 301.97354 * 22 11 10 24 24 C 1.53003 * 117.49580 * 128.13792 * 9 7 2 25 25 C 1.52991 * 117.49796 * 59.47840 * 9 7 2 26 26 H 0.97001 * 120.00121 * 175.22134 * 1 2 3 27 27 H 1.09000 * 109.46739 * 58.96476 * 10 9 7 28 28 H 1.08994 * 109.47130 * 178.95943 * 10 9 7 29 29 H 1.09000 * 109.52626 * 294.04720 * 12 11 10 30 30 H 1.09002 * 109.52530 * 54.25782 * 12 11 10 31 31 H 1.09002 * 109.54778 * 300.48266 * 13 12 11 32 32 H 1.08996 * 109.55033 * 180.20230 * 13 12 11 33 33 H 1.09000 * 109.45622 * 181.55517 * 14 13 12 34 34 H 1.09001 * 109.45941 * 61.60296 * 14 13 12 35 35 H 1.09006 * 109.63115 * 189.30425 * 17 15 14 36 36 H 1.08995 * 109.80420 * 68.80546 * 17 15 14 37 37 H 1.09001 * 109.21899 * 189.16398 * 18 17 15 38 38 H 1.09001 * 109.21631 * 69.82598 * 18 17 15 39 39 H 0.97001 * 117.98169 * 198.78204 * 19 18 17 40 40 H 1.08993 * 117.50033 * 359.97438 * 24 9 7 41 41 H 1.08998 * 117.49691 * 145.01792 * 24 9 7 42 42 H 1.09001 * 117.50088 * 214.97556 * 25 9 7 43 43 H 1.08997 * 117.50241 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4466 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.0999 9 6 1.2575 -2.4953 -0.1411 10 6 0.7234 -3.0937 1.1618 11 7 1.8456 -3.3793 2.0657 12 6 2.6177 -4.5365 1.5965 13 6 3.8549 -4.7065 2.4824 14 6 3.4058 -4.9406 3.9262 15 6 2.5538 -3.7572 4.3963 16 1 3.1532 -2.8483 4.4490 17 6 1.9819 -4.0932 5.7824 18 6 1.3165 -5.4681 5.7124 19 7 0.3953 -5.5394 4.5855 20 6 0.4230 -4.7048 3.5433 21 8 -0.3632 -4.8855 2.6376 22 6 1.3795 -3.5562 3.4397 23 1 0.8569 -2.6488 3.7423 24 6 1.7303 -3.4679 -1.2235 25 6 0.4208 -2.6964 -1.4061 26 1 -0.4850 -0.8371 -0.0700 27 1 0.0460 -2.3839 1.6366 28 1 0.1875 -4.0176 0.9445 29 1 2.0015 -5.4337 1.6551 30 1 2.9281 -4.3731 0.5644 31 1 4.4661 -3.8053 2.4322 32 1 4.4355 -5.5622 2.1377 33 1 4.2817 -5.0352 4.5681 34 1 2.8165 -5.8561 3.9793 35 1 1.2435 -3.3430 6.0655 36 1 2.7854 -4.1122 6.5187 37 1 0.7676 -5.6486 6.6367 38 1 2.0846 -6.2329 5.5969 39 1 -0.2799 -6.2358 4.5930 40 1 2.5812 -3.1663 -1.8342 41 1 1.6604 -4.5339 -1.0076 42 1 -0.5101 -3.2554 -1.3103 43 1 0.4102 -1.8874 -2.1365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880528359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:48 Heat of formation + Delta-G solvation = -8.159714 kcal Electronic energy + Delta-G solvation = -23712.550563 eV Core-core repulsion = 20564.985573 eV Total energy + Delta-G solvation = -3147.564990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.04376 -37.55731 -37.10536 -35.60013 -32.49530 -31.68532 -31.55806 -28.96996 -26.35343 -24.72144 -24.10693 -23.36810 -21.59691 -21.25697 -20.86340 -19.11905 -17.74138 -17.13263 -16.41394 -15.98044 -15.79030 -15.28959 -14.40057 -14.23308 -14.04740 -13.86931 -13.61753 -13.36348 -13.13909 -12.79192 -12.37661 -12.27254 -11.93336 -11.61451 -11.46469 -11.26875 -10.99574 -10.70072 -10.67187 -10.39504 -10.30697 -10.18814 -10.05261 -10.00157 -9.73496 -9.23239 -9.01612 -8.29360 -8.25803 -8.12768 -7.35807 -6.13105 -3.81937 2.84084 3.37437 3.52342 3.56464 3.71868 4.33590 4.60084 4.66575 4.71861 4.75369 4.85819 5.10904 5.19453 5.24614 5.34800 5.38503 5.55409 5.58289 5.70652 5.76125 5.79003 5.87454 5.99009 6.07969 6.12214 6.20707 6.25085 6.35115 6.45038 6.56068 6.59288 6.69704 6.78585 6.84860 6.95988 7.04018 7.38204 7.40514 7.52022 7.80316 7.92380 8.42464 8.54331 8.66001 9.10886 9.89484 11.26742 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.006350 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.523115 B = 4408.262986 C = 4685.726553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 1.068 2.932 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.034 3.966 10 C 0.098 3.902 11 N -0.480 5.480 12 C 0.050 3.950 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.080 4.080 16 H 0.096 0.904 17 C -0.134 4.134 18 C 0.111 3.889 19 N -0.727 5.727 20 C 0.491 3.509 21 O -0.544 6.544 22 C 0.078 3.922 23 H 0.104 0.896 24 C -0.203 4.203 25 C -0.181 4.181 26 H 0.274 0.726 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.020 0.980 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.390 0.610 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -11.122 12.647 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.898 3.102 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.581 4.581 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.029 4.029 11 N -0.201 5.201 12 C -0.078 4.078 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.099 4.099 16 H 0.114 0.886 17 C -0.172 4.172 18 C -0.013 4.013 19 N -0.381 5.381 20 C 0.277 3.723 21 O -0.421 6.421 22 C -0.035 4.035 23 H 0.122 0.878 24 C -0.240 4.240 25 C -0.220 4.220 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.225 0.775 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.572 -8.950 12.200 16.124 hybrid contribution -0.686 -2.742 0.081 2.827 sum 4.886 -11.691 12.281 17.646 Atomic orbital electron populations 1.70677 1.06764 1.31477 1.46366 1.25649 0.96608 1.01954 0.94051 0.83568 0.74644 0.75515 0.76511 1.21740 1.21408 1.21730 1.21148 0.93923 0.89383 1.53695 0.93082 1.19164 0.97347 0.94981 0.85191 1.21920 0.89852 0.97914 0.93212 1.61781 1.23910 1.35737 0.98705 1.22237 0.94117 0.91045 1.00406 1.21598 0.97881 1.01784 0.94237 1.21760 0.99203 0.97576 0.97178 1.21330 0.96062 1.00025 0.92478 0.88564 1.22005 1.00851 0.96316 0.98000 1.21342 0.92880 0.98459 0.88668 1.45800 1.35980 1.34541 1.21774 1.21933 0.85072 0.84231 0.81096 1.90736 1.41096 1.73323 1.36911 1.21530 0.93523 0.95417 0.93024 0.87787 1.22920 0.98017 0.95425 1.07621 1.22760 0.92738 1.02097 1.04365 0.91491 0.91800 0.94316 0.96198 0.89173 0.90621 0.92182 0.91810 0.92144 0.90820 0.89643 0.91146 0.91735 0.77543 0.90434 0.91924 0.91790 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.82 13.56 55.43 0.75 -27.07 16 2 C 0.02 0.61 5.38 -17.82 -0.10 0.52 16 3 Si 1.07 25.70 29.91 -169.99 -5.08 20.62 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.54 -15.25 8.67 -34.44 -0.30 -15.55 16 8 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.03 0.87 0.86 -155.66 -0.13 0.73 16 10 C 0.10 2.35 3.72 -3.82 -0.01 2.34 16 11 N -0.48 -9.80 4.35 -229.27 -1.00 -10.80 16 12 C 0.05 0.91 4.95 -3.81 -0.02 0.89 16 13 C -0.12 -1.68 6.10 -26.67 -0.16 -1.84 16 14 C -0.12 -1.42 4.62 -26.62 -0.12 -1.55 16 15 C -0.08 -1.02 2.91 -90.27 -0.26 -1.28 16 16 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 17 C -0.13 -1.23 5.66 -26.43 -0.15 -1.38 16 18 C 0.11 0.96 6.34 -4.50 -0.03 0.93 16 19 N -0.73 -8.98 5.20 -61.48 -0.32 -9.30 16 20 C 0.49 8.35 5.85 -11.95 -0.07 8.28 16 21 O -0.54 -11.60 14.18 5.56 0.08 -11.52 16 22 C 0.08 1.34 2.09 -69.79 -0.15 1.19 16 23 H 0.10 1.92 7.98 -51.93 -0.41 1.50 16 24 C -0.20 -4.65 8.20 -26.69 -0.22 -4.87 16 25 C -0.18 -4.49 8.56 -26.70 -0.23 -4.71 16 26 H 0.27 8.35 6.28 -40.82 -0.26 8.09 16 27 H 0.06 1.71 7.73 -51.93 -0.40 1.30 16 28 H 0.04 0.97 5.89 -51.93 -0.31 0.66 16 29 H 0.02 0.38 7.18 -51.93 -0.37 0.01 16 30 H 0.09 1.79 5.35 -51.93 -0.28 1.51 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.72 5.44 -51.93 -0.28 0.44 16 35 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.50 6.63 -51.93 -0.34 0.16 16 39 H 0.39 4.39 8.81 -40.82 -0.36 4.03 16 40 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.06 1.34 7.47 -51.93 -0.39 0.95 16 42 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 320.40 15.07 4.83 4.83 Total: -1.00 -32.79 320.40 -9.53 -42.32 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.84 Total: 7.21 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.95 Total: -16.30 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.57 Total: -47.17 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.79 -9.53 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880528359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.164 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds