Wall clock time and date at job start Tue Mar 31 2020 00:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48504 * 109.46996 * 90.00151 * 3 2 1 5 5 H 1.48503 * 109.47366 * 330.00256 * 3 2 1 6 6 H 1.48501 * 109.47429 * 210.00161 * 3 2 1 7 7 C 1.37876 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00169 * 186.16200 * 7 2 1 9 9 C 1.50705 * 119.99804 * 6.15780 * 7 2 1 10 10 C 1.53001 * 115.54998 * 273.80356 * 9 7 2 11 11 N 1.46898 * 109.47194 * 298.96723 * 10 9 7 12 12 C 1.46812 * 111.00011 * 287.65648 * 11 10 9 13 13 C 1.53117 * 109.12283 * 174.15415 * 12 11 10 14 14 C 1.53011 * 109.01296 * 60.33778 * 13 12 11 15 15 C 1.53208 * 109.54415 * 301.58149 * 14 13 12 16 16 H 1.09003 * 110.67765 * 294.20544 * 15 14 13 17 17 C 1.53665 * 108.35094 * 173.41889 * 15 14 13 18 18 C 1.52911 * 108.49643 * 309.00264 * 17 15 14 19 19 N 1.45732 * 110.76073 * 309.49810 * 18 17 15 20 20 C 1.33545 * 124.04155 * 18.75684 * 19 18 17 21 21 O 1.21282 * 118.44076 * 177.47093 * 20 19 18 22 22 C 1.46162 * 111.00071 * 162.55766 * 11 10 9 23 23 H 1.09000 * 108.24666 * 301.97354 * 22 11 10 24 24 C 1.53003 * 117.49580 * 128.13792 * 9 7 2 25 25 C 1.52991 * 117.49796 * 59.47840 * 9 7 2 26 26 H 0.97001 * 120.00121 * 175.22134 * 1 2 3 27 27 H 1.09000 * 109.46739 * 58.96476 * 10 9 7 28 28 H 1.08994 * 109.47130 * 178.95943 * 10 9 7 29 29 H 1.09000 * 109.52626 * 294.04720 * 12 11 10 30 30 H 1.09002 * 109.52530 * 54.25782 * 12 11 10 31 31 H 1.09002 * 109.54778 * 300.48266 * 13 12 11 32 32 H 1.08996 * 109.55033 * 180.20230 * 13 12 11 33 33 H 1.09000 * 109.45622 * 181.55517 * 14 13 12 34 34 H 1.09001 * 109.45941 * 61.60296 * 14 13 12 35 35 H 1.09006 * 109.63115 * 189.30425 * 17 15 14 36 36 H 1.08995 * 109.80420 * 68.80546 * 17 15 14 37 37 H 1.09001 * 109.21899 * 189.16398 * 18 17 15 38 38 H 1.09001 * 109.21631 * 69.82598 * 18 17 15 39 39 H 0.97001 * 117.98169 * 198.78204 * 19 18 17 40 40 H 1.08993 * 117.50033 * 359.97438 * 24 9 7 41 41 H 1.08998 * 117.49691 * 145.01792 * 24 9 7 42 42 H 1.09001 * 117.50088 * 214.97556 * 25 9 7 43 43 H 1.08997 * 117.50241 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4466 2.6527 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.0999 9 6 1.2575 -2.4953 -0.1411 10 6 0.7234 -3.0937 1.1618 11 7 1.8456 -3.3793 2.0657 12 6 2.6177 -4.5365 1.5965 13 6 3.8549 -4.7065 2.4824 14 6 3.4058 -4.9406 3.9262 15 6 2.5538 -3.7572 4.3963 16 1 3.1532 -2.8483 4.4490 17 6 1.9819 -4.0932 5.7824 18 6 1.3165 -5.4681 5.7124 19 7 0.3953 -5.5394 4.5855 20 6 0.4230 -4.7048 3.5433 21 8 -0.3632 -4.8855 2.6376 22 6 1.3795 -3.5562 3.4397 23 1 0.8569 -2.6488 3.7423 24 6 1.7303 -3.4679 -1.2235 25 6 0.4208 -2.6964 -1.4061 26 1 -0.4850 -0.8371 -0.0700 27 1 0.0460 -2.3839 1.6366 28 1 0.1875 -4.0176 0.9445 29 1 2.0015 -5.4337 1.6551 30 1 2.9281 -4.3731 0.5644 31 1 4.4661 -3.8053 2.4322 32 1 4.4355 -5.5622 2.1377 33 1 4.2817 -5.0352 4.5681 34 1 2.8165 -5.8561 3.9793 35 1 1.2435 -3.3430 6.0655 36 1 2.7854 -4.1122 6.5187 37 1 0.7676 -5.6486 6.6367 38 1 2.0846 -6.2329 5.5969 39 1 -0.2799 -6.2358 4.5930 40 1 2.5812 -3.1663 -1.8342 41 1 1.6604 -4.5339 -1.0076 42 1 -0.5101 -3.2554 -1.3103 43 1 0.4102 -1.8874 -2.1365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880528359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:48 Heat of formation + Delta-G solvation = -31.645891 kcal Electronic energy + Delta-G solvation = -23713.569000 eV Core-core repulsion = 20564.985573 eV Total energy + Delta-G solvation = -3148.583427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.30257 -39.25002 -38.44051 -37.04138 -33.96090 -33.68435 -32.76642 -30.11805 -27.95097 -26.78830 -25.28080 -24.73218 -23.16626 -22.72738 -22.19458 -21.15802 -18.93345 -18.39090 -18.23605 -17.26188 -17.17068 -16.49754 -15.92680 -15.58016 -15.45208 -15.36605 -15.31519 -14.88141 -14.48481 -14.18175 -14.11746 -13.65403 -13.40700 -13.00944 -12.85020 -12.60931 -12.57288 -12.36683 -12.24554 -12.19749 -11.90798 -11.65079 -11.55811 -11.24114 -11.05615 -11.00172 -10.38089 -10.36723 -10.18675 -10.04913 -8.99018 -8.43294 -6.11975 1.50786 1.55773 1.65489 1.82200 2.31043 2.64632 2.87512 3.33491 3.37255 3.58674 3.66070 3.80452 3.84237 4.08942 4.19834 4.23098 4.28573 4.34796 4.44901 4.47476 4.58811 4.62813 4.68535 4.73723 4.76884 4.82557 4.88170 4.98882 5.01982 5.02958 5.11710 5.16962 5.23077 5.33525 5.39620 5.46317 5.55289 5.84898 6.13666 6.17902 6.32407 6.36323 6.40838 6.82505 7.19160 7.67045 8.96506 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.006350 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.523115 B = 4408.262986 C = 4685.726553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.028 4.028 3 Si 1.114 2.886 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.043 0.957 9 C 0.011 3.989 10 C 0.123 3.877 11 N -0.494 5.494 12 C 0.052 3.948 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.077 4.077 16 H 0.091 0.909 17 C -0.127 4.127 18 C 0.102 3.898 19 N -0.710 5.710 20 C 0.489 3.511 21 O -0.600 6.600 22 C 0.071 3.929 23 H 0.077 0.923 24 C -0.172 4.172 25 C -0.189 4.189 26 H 0.259 0.741 27 H 0.021 0.979 28 H 0.025 0.975 29 H 0.009 0.991 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.398 0.602 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -12.532 15.255 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.226 4.226 3 Si 0.937 3.063 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.061 0.939 9 C 0.010 3.990 10 C -0.005 4.005 11 N -0.216 5.216 12 C -0.075 4.075 13 C -0.151 4.151 14 C -0.150 4.150 15 C -0.096 4.096 16 H 0.109 0.891 17 C -0.165 4.165 18 C -0.020 4.020 19 N -0.362 5.362 20 C 0.275 3.725 21 O -0.481 6.481 22 C -0.041 4.041 23 H 0.095 0.905 24 C -0.209 4.209 25 C -0.227 4.227 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.027 0.973 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.234 0.766 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.137 -10.407 14.871 19.891 hybrid contribution -1.481 -2.368 -0.677 2.874 sum 6.656 -12.775 14.193 20.223 Atomic orbital electron populations 1.70798 1.07779 1.30646 1.48785 1.27023 0.96608 1.05617 0.93326 0.82971 0.74147 0.71792 0.77354 1.20288 1.21529 1.19795 1.21350 0.93589 0.90645 1.52794 0.93905 1.19257 0.98223 0.95316 0.86237 1.21430 0.90300 0.95791 0.92998 1.61694 1.22751 1.37442 0.99731 1.22240 0.95332 0.89527 1.00437 1.21601 0.95719 1.02436 0.95306 1.21760 1.00416 0.96900 0.95879 1.21380 0.94302 1.00630 0.93302 0.89053 1.22043 1.01868 0.96352 0.96254 1.21758 0.93198 0.98791 0.88257 1.45717 1.36206 1.33009 1.21249 1.21743 0.84405 0.84713 0.81614 1.90707 1.43170 1.74824 1.39431 1.21629 0.95757 0.94642 0.92107 0.90533 1.22862 0.96799 0.95891 1.05392 1.22670 0.93904 1.02258 1.03893 0.93023 0.96049 0.95690 0.97271 0.91293 0.91439 0.89787 0.87934 0.91734 0.91503 0.85707 0.87703 0.89301 0.76628 0.89939 0.90107 0.91405 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.53 13.56 21.45 0.29 -59.24 16 2 C -0.03 -1.64 5.38 84.65 0.46 -1.19 16 3 Si 1.11 52.27 29.91 68.60 2.05 54.32 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.50 8.67 25.60 0.22 -31.28 16 8 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 9 C 0.01 0.56 0.86 -52.93 -0.05 0.51 16 10 C 0.12 6.27 3.72 86.30 0.32 6.59 16 11 N -0.49 -20.89 4.35 -879.27 -3.82 -24.71 16 12 C 0.05 1.91 4.95 86.36 0.43 2.34 16 13 C -0.11 -2.97 6.10 30.64 0.19 -2.78 16 14 C -0.11 -2.23 4.62 30.67 0.14 -2.09 16 15 C -0.08 -1.79 2.91 -10.57 -0.03 -1.82 16 16 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.13 -1.83 5.66 30.79 0.17 -1.66 16 18 C 0.10 1.30 6.34 86.49 0.55 1.85 16 19 N -0.71 -16.07 5.20 -467.51 -2.43 -18.51 16 20 C 0.49 16.80 5.85 87.58 0.51 17.31 16 21 O -0.60 -26.81 14.18 -3.04 -0.04 -26.86 16 22 C 0.07 2.50 2.09 43.97 0.09 2.59 16 23 H 0.08 3.03 7.98 -2.39 -0.02 3.01 16 24 C -0.17 -8.04 8.20 30.62 0.25 -7.79 16 25 C -0.19 -9.76 8.56 30.62 0.26 -9.49 16 26 H 0.26 16.77 6.28 -92.71 -0.58 16.19 16 27 H 0.02 1.23 7.73 -2.39 -0.02 1.21 16 28 H 0.03 1.34 5.89 -2.39 -0.01 1.32 16 29 H 0.01 0.35 7.18 -2.39 -0.02 0.33 16 30 H 0.07 2.76 5.35 -2.39 -0.01 2.75 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.26 5.44 -2.39 -0.01 1.25 16 35 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.84 6.63 -2.39 -0.02 0.82 16 39 H 0.40 8.19 8.81 -92.71 -0.82 7.37 16 40 H 0.08 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.08 3.46 7.47 -2.39 -0.02 3.45 16 42 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.06 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -76.76 320.40 -0.06 -76.82 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.38 Total: 25.07 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.52 Total: -26.91 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -5.97 Total: -102.45 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.04 Total: -26.86 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.05 Total: 54.32 kcal Total: -76.76 -0.06 -76.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880528359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.177 kcal (2) G-P(sol) polarization free energy of solvation -76.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds