Wall clock time and date at job start Tue Mar 31 2020 00:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00357 * 2 1 4 4 H 1.48494 * 109.47344 * 240.00392 * 3 2 1 5 5 H 1.48499 * 109.46652 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46738 * 120.00028 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00056 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.81322 * 61.88159 * 9 7 2 11 11 C 1.54886 * 110.75544 * 298.55097 * 9 7 2 12 12 C 1.54267 * 104.19749 * 203.74118 * 11 9 7 13 13 C 1.53876 * 106.59636 * 23.60450 * 12 11 9 14 14 H 1.08999 * 110.03567 * 240.67054 * 13 12 11 15 15 N 1.46506 * 110.02757 * 119.28577 * 13 12 11 16 16 C 1.34777 * 119.99873 * 86.45892 * 15 13 12 17 17 O 1.21592 * 119.99797 * 359.97438 * 16 15 13 18 18 N 1.34774 * 119.99902 * 179.97438 * 16 15 13 19 19 C 1.46499 * 119.99966 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47337 * 180.02562 * 19 18 16 21 21 H 1.08994 * 110.33914 * 307.28437 * 20 19 18 22 22 C 1.51097 * 110.38803 * 69.69413 * 20 19 18 23 23 C 1.30528 * 111.10458 * 135.25068 * 22 20 19 24 24 C 1.51098 * 111.10098 * 359.97438 * 23 22 20 25 25 C 1.54634 * 104.72967 * 343.56207 * 24 23 22 26 26 C 1.54265 * 106.59965 * 0.02562 * 13 12 11 27 27 H 0.96993 * 119.99458 * 359.97438 * 1 2 3 28 28 H 1.09007 * 110.48864 * 85.06179 * 11 9 7 29 29 H 1.08995 * 110.48689 * 322.41939 * 11 9 7 30 30 H 1.09003 * 110.02922 * 264.32931 * 12 11 9 31 31 H 1.08993 * 110.03753 * 142.89274 * 12 11 9 32 32 H 0.96995 * 120.00050 * 266.18007 * 15 13 12 33 33 H 0.96999 * 120.00050 * 0.02562 * 18 16 15 34 34 H 1.09005 * 109.47136 * 300.00071 * 19 18 16 35 35 H 1.08996 * 109.47174 * 59.99413 * 19 18 16 36 36 H 1.07998 * 124.44802 * 315.23117 * 22 20 19 37 37 H 1.07992 * 124.44779 * 180.02562 * 23 22 20 38 38 H 1.08999 * 110.38908 * 224.74995 * 24 23 22 39 39 H 1.09006 * 110.39006 * 102.37494 * 24 23 22 40 40 H 1.08998 * 111.03884 * 266.59965 * 25 24 23 41 41 H 1.09000 * 111.03653 * 142.66478 * 25 24 23 42 42 H 1.09004 * 110.48776 * 95.06290 * 26 13 12 43 43 H 1.09001 * 110.48766 * 217.70623 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6411 -2.5943 -0.8990 11 6 0.3776 -2.6287 1.2720 12 6 0.1829 -4.1494 1.4441 13 6 1.3579 -4.8278 0.7183 14 1 0.9839 -5.4664 -0.0819 15 7 2.1433 -5.6209 1.6673 16 6 1.7892 -6.8930 1.9375 17 8 0.8177 -7.3822 1.3940 18 7 2.5120 -7.6228 2.8101 19 6 2.1268 -9.0053 3.1043 20 6 3.1045 -9.6024 4.1184 21 1 4.1310 -9.4769 3.7742 22 6 2.9181 -8.9574 5.4720 23 6 2.9109 -9.8524 6.4221 24 6 3.0905 -11.2435 5.8604 25 6 2.7921 -11.0992 4.3500 26 6 2.2259 -3.6958 0.1310 27 1 -0.4849 0.8400 0.0004 28 1 -0.5835 -2.1351 1.1270 29 1 0.8960 -2.2105 2.1347 30 1 -0.7613 -4.4580 0.9955 31 1 0.1970 -4.4102 2.5023 32 1 2.9204 -5.2319 2.0981 33 1 3.2867 -7.2324 3.2440 34 1 1.1189 -9.0212 3.5190 35 1 2.1512 -9.5924 2.1863 36 1 2.8060 -7.8953 5.6324 37 1 2.7912 -9.6281 7.4717 38 1 2.3848 -11.9337 6.3226 39 1 4.1139 -11.5859 6.0142 40 1 1.7463 -11.3189 4.1351 41 1 3.4529 -11.7327 3.7583 42 1 3.0428 -3.4502 0.8096 43 1 2.6138 -3.9808 -0.8470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:44 Heat of formation + Delta-G solvation = -33.712796 kcal Electronic energy + Delta-G solvation = -21219.294340 eV Core-core repulsion = 18070.621286 eV Total energy + Delta-G solvation = -3148.673055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00108 -38.97594 -37.13452 -34.45384 -33.57107 -31.92498 -29.95121 -29.11706 -28.09910 -26.83785 -24.41107 -23.59290 -21.19084 -20.69268 -19.60972 -19.13832 -18.97263 -17.96852 -16.65430 -16.35838 -15.87376 -15.53493 -14.95776 -14.62557 -14.49827 -13.99016 -13.86990 -13.38859 -12.61090 -12.34277 -12.28649 -12.21811 -12.18639 -11.75551 -11.58741 -11.47300 -11.26663 -11.05908 -10.93232 -10.87764 -10.58784 -10.28398 -9.92742 -9.76774 -9.47784 -9.24760 -9.19436 -9.05065 -8.78411 -8.41695 -8.33204 -5.98918 -4.02593 1.95164 2.94535 3.32094 3.37393 3.39187 3.50183 4.24222 4.27257 4.44301 4.53614 4.58739 4.89851 5.04342 5.16199 5.19815 5.33110 5.41754 5.50161 5.58675 5.61950 5.69814 5.74144 5.80097 5.90199 5.95831 6.20638 6.38201 6.42832 6.54199 6.57061 6.63857 6.72376 6.80104 6.94736 7.02365 7.14044 7.32336 7.43338 7.74718 7.91524 8.05298 8.29298 8.44852 8.89348 8.99278 9.61349 11.10148 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037160 B = 0.002818 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.311921 B = 9934.064110 C =10209.729311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.156 3.844 14 H 0.078 0.922 15 N -0.734 5.734 16 C 0.700 3.300 17 O -0.596 6.596 18 N -0.752 5.752 19 C 0.150 3.850 20 C -0.080 4.080 21 H 0.088 0.912 22 C -0.159 4.159 23 C -0.169 4.169 24 C -0.101 4.101 25 C -0.118 4.118 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.392 0.608 33 H 0.393 0.607 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 -19.348 10.918 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.052 3.948 14 H 0.096 0.904 15 N -0.388 5.388 16 C 0.400 3.600 17 O -0.474 6.474 18 N -0.409 5.409 19 C 0.025 3.975 20 C -0.099 4.099 21 H 0.106 0.894 22 C -0.177 4.177 23 C -0.187 4.187 24 C -0.138 4.138 25 C -0.156 4.156 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.331 -19.686 10.381 23.138 hybrid contribution 1.175 1.406 0.597 1.927 sum 7.505 -18.281 10.977 22.606 Atomic orbital electron populations 1.69954 1.05863 1.26531 1.50303 1.24979 0.94834 0.98980 0.95116 0.86702 0.79610 0.83382 0.78521 1.20327 1.21370 1.20382 1.21058 0.92688 0.90472 1.51095 0.92737 1.19548 0.91997 0.90972 0.94165 0.94997 1.22304 1.01597 0.90464 0.99465 1.22664 0.97190 0.98681 0.98834 1.21729 0.91709 0.91439 0.89908 0.90352 1.45545 1.33162 1.11624 1.48445 1.16050 0.82747 0.81357 0.79893 1.90900 1.29115 1.71809 1.55576 1.45131 1.33342 1.14248 1.48137 1.21146 0.97835 0.80973 0.97526 1.21317 0.99867 0.94974 0.93739 0.89432 1.23290 1.00619 0.99411 0.94382 1.23286 1.01066 0.95221 0.99086 1.21370 1.01712 0.95711 0.95032 1.22474 1.02443 0.94635 0.96017 1.22764 0.98744 0.95482 0.98911 0.93013 0.91295 0.93596 0.92662 0.93305 0.77423 0.77319 0.91656 0.91681 0.85742 0.85908 0.91107 0.90714 0.90489 0.90578 0.92148 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 12.02 55.43 0.67 -24.74 16 2 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.86 8.54 -34.44 -0.29 -14.15 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.27 2.82 -89.77 -0.25 1.02 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.10 -2.34 5.57 -25.07 -0.14 -2.48 16 12 C -0.13 -2.72 6.59 -25.61 -0.17 -2.89 16 13 C 0.16 2.93 3.23 -66.81 -0.22 2.72 16 14 H 0.08 1.57 7.61 -51.93 -0.39 1.17 16 15 N -0.73 -11.45 5.00 -57.58 -0.29 -11.74 16 16 C 0.70 11.30 8.55 -86.92 -0.74 10.56 16 17 O -0.60 -12.16 16.02 5.28 0.08 -12.08 16 18 N -0.75 -8.73 5.43 -65.22 -0.35 -9.08 16 19 C 0.15 1.57 4.99 -4.04 -0.02 1.55 16 20 C -0.08 -0.62 2.94 -90.71 -0.27 -0.89 16 21 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.16 -1.27 9.88 -35.70 -0.35 -1.62 16 23 C -0.17 -1.24 10.78 -35.70 -0.38 -1.62 16 24 C -0.10 -0.64 6.81 -26.83 -0.18 -0.82 16 25 C -0.12 -0.78 6.71 -25.00 -0.17 -0.95 16 26 C -0.12 -2.41 5.94 -25.06 -0.15 -2.56 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.07 1.77 7.38 -51.92 -0.38 1.38 16 29 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.39 5.08 8.35 -40.82 -0.34 4.74 16 33 H 0.39 3.49 8.42 -40.82 -0.34 3.14 16 34 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 346.72 15.07 5.22 5.22 Total: -1.00 -31.22 346.72 -10.41 -41.63 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.29 Total: 5.23 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.43 Total: -10.50 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.02 Total: -45.57 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.22 -10.41 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.921 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds