Wall clock time and date at job start Tue Mar 31 2020 00:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48497 * 109.46929 * 270.00160 * 3 2 1 5 5 H 1.48503 * 109.46841 * 29.99788 * 3 2 1 6 6 H 1.48492 * 109.47274 * 149.99970 * 3 2 1 7 7 C 1.37871 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00444 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99624 * 0.02562 * 7 2 1 10 10 H 1.08993 * 110.81986 * 56.65868 * 9 7 2 11 11 C 1.55238 * 110.89800 * 293.21103 * 9 7 2 12 12 C 1.54266 * 104.23333 * 203.79412 * 11 9 7 13 13 C 1.53869 * 106.59800 * 23.61579 * 12 11 9 14 14 H 1.09001 * 110.02983 * 240.71432 * 13 12 11 15 15 N 1.46503 * 110.07664 * 119.30615 * 13 12 11 16 16 C 1.34775 * 119.99832 * 87.80500 * 15 13 12 17 17 O 1.21584 * 120.00418 * 0.02562 * 16 15 13 18 18 N 1.34777 * 120.00028 * 180.02562 * 16 15 13 19 19 C 1.46497 * 120.00441 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47483 * 179.97438 * 19 18 16 21 21 H 1.09001 * 110.34389 * 55.83432 * 20 19 18 22 22 C 1.51100 * 110.38911 * 293.55050 * 20 19 18 23 23 C 1.30529 * 111.10758 * 224.75146 * 22 20 19 24 24 C 1.51100 * 111.09772 * 359.97438 * 23 22 20 25 25 C 1.54628 * 110.38727 * 178.24310 * 20 19 18 26 26 C 1.54266 * 106.60031 * 359.97438 * 13 12 11 27 27 H 0.96999 * 119.99732 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.46917 * 85.10442 * 11 9 7 29 29 H 1.09007 * 110.58541 * 322.54362 * 11 9 7 30 30 H 1.08999 * 110.03060 * 264.32313 * 12 11 9 31 31 H 1.09006 * 110.06829 * 142.91691 * 12 11 9 32 32 H 0.96993 * 119.99705 * 267.80865 * 15 13 12 33 33 H 0.97003 * 119.99641 * 0.02562 * 18 16 15 34 34 H 1.08998 * 109.46917 * 300.00828 * 19 18 16 35 35 H 1.09009 * 109.46684 * 60.00237 * 19 18 16 36 36 H 1.08008 * 124.44642 * 44.76568 * 22 20 19 37 37 H 1.07995 * 124.44688 * 179.97438 * 23 22 20 38 38 H 1.09004 * 110.38527 * 135.25019 * 24 23 22 39 39 H 1.08996 * 110.38564 * 257.51002 * 24 23 22 40 40 H 1.09003 * 111.04037 * 261.47496 * 25 20 19 41 41 H 1.09000 * 111.03981 * 25.42047 * 25 20 19 42 42 H 1.09002 * 110.48629 * 95.07240 * 26 13 12 43 43 H 1.08998 * 110.48744 * 217.58143 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5728 -2.5548 -0.8508 11 6 0.4787 -2.6925 1.3332 12 6 0.2977 -4.2202 1.4483 13 6 1.4119 -4.8599 0.6015 14 1 0.9759 -5.4609 -0.1965 15 7 2.2694 -5.6946 1.4466 16 6 1.9517 -6.9868 1.6607 17 8 0.9538 -7.4599 1.1522 18 7 2.7404 -7.7546 2.4385 19 6 2.3949 -9.1590 2.6718 20 6 3.4459 -9.7987 3.5812 21 1 3.5379 -9.2344 4.5093 22 6 4.7796 -9.8707 2.8746 23 6 5.3400 -11.0370 3.0459 24 6 4.4736 -11.9371 3.8958 25 6 3.0779 -11.2710 3.8772 26 6 2.2306 -3.6986 0.0008 27 1 -0.4850 0.8401 -0.0004 28 1 -0.4906 -2.1959 1.2875 29 1 1.0615 -2.3131 2.1725 30 1 -0.6790 -4.5107 1.0614 31 1 0.3944 -4.5310 2.4887 32 1 3.0657 -5.3173 1.8519 33 1 3.5364 -7.3771 2.8445 34 1 1.4166 -9.2181 3.1489 35 1 2.3674 -9.6894 1.7198 36 1 5.2126 -9.0629 2.3031 37 1 6.2971 -11.3213 2.6343 38 1 4.4230 -12.9357 3.4618 39 1 4.8602 -11.9855 4.9137 40 1 2.5871 -11.3645 4.8460 41 1 2.4565 -11.6862 3.0838 42 1 3.0985 -3.4817 0.6235 43 1 2.5421 -3.9375 -1.0161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:47 Heat of formation + Delta-G solvation = -34.359879 kcal Electronic energy + Delta-G solvation = -21187.875110 eV Core-core repulsion = 18039.173996 eV Total energy + Delta-G solvation = -3148.701114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01079 -38.98111 -37.12684 -34.45572 -33.55974 -31.94481 -29.96818 -29.11809 -28.10594 -26.85213 -24.42130 -23.60059 -21.19835 -20.70242 -19.61506 -19.15843 -18.95186 -17.99808 -16.68226 -16.37681 -15.89690 -15.31498 -15.23441 -14.61546 -14.44306 -13.98923 -13.85188 -13.42295 -12.60351 -12.32864 -12.31212 -12.22838 -12.19223 -11.76514 -11.59292 -11.49356 -11.27881 -11.06292 -10.95554 -10.87895 -10.56813 -10.27162 -9.94962 -9.76638 -9.51912 -9.25692 -9.19436 -9.05538 -8.80302 -8.41752 -8.34300 -5.99790 -4.02880 1.93897 2.93855 3.30809 3.37859 3.40080 3.49522 4.23675 4.26554 4.44180 4.53159 4.57805 4.89362 5.03659 5.15507 5.19208 5.32280 5.41034 5.49475 5.58124 5.61943 5.69261 5.74002 5.79356 5.88934 5.94998 6.18936 6.36647 6.42022 6.53521 6.56080 6.62145 6.71858 6.78853 6.93975 7.00710 7.13266 7.30031 7.40912 7.71481 7.88479 8.03867 8.28669 8.44791 8.88721 8.99731 9.61099 11.09900 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040039 B = 0.002785 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.151641 B =10050.142431 C =10456.208457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.035 0.965 11 C -0.103 4.103 12 C -0.134 4.134 13 C 0.156 3.844 14 H 0.079 0.921 15 N -0.734 5.734 16 C 0.700 3.300 17 O -0.596 6.596 18 N -0.752 5.752 19 C 0.150 3.850 20 C -0.081 4.081 21 H 0.088 0.912 22 C -0.159 4.159 23 C -0.169 4.169 24 C -0.101 4.101 25 C -0.117 4.117 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.392 0.608 33 H 0.393 0.607 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.016 -20.208 8.649 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.054 0.946 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.052 3.948 14 H 0.098 0.902 15 N -0.388 5.388 16 C 0.400 3.600 17 O -0.474 6.474 18 N -0.408 5.408 19 C 0.025 3.975 20 C -0.099 4.099 21 H 0.106 0.894 22 C -0.177 4.177 23 C -0.186 4.186 24 C -0.138 4.138 25 C -0.155 4.155 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.895 -20.529 8.162 23.461 hybrid contribution 1.285 1.348 0.425 1.910 sum 9.180 -19.182 8.587 22.934 Atomic orbital electron populations 1.69963 1.05880 1.26457 1.50353 1.24986 0.94826 0.99010 0.95111 0.86647 0.79846 0.83731 0.78053 1.20738 1.21314 1.19999 1.21088 0.92710 0.90441 1.50921 0.92682 1.19601 0.92346 0.90888 0.93790 0.94640 1.22398 1.01396 0.90539 0.99819 1.22644 0.97609 0.98640 0.98416 1.21721 0.90753 0.90681 0.91673 0.90245 1.45533 1.29829 1.09120 1.54282 1.16046 0.83017 0.81399 0.79572 1.90898 1.27952 1.73509 1.55047 1.45128 1.29484 1.11592 1.54641 1.21141 0.97199 0.80133 0.98991 1.21315 0.93108 0.97104 0.98402 0.89411 1.23283 0.96367 0.98269 0.99791 1.23286 0.99889 0.96001 0.99468 1.21373 0.94057 0.98848 0.99555 1.22469 0.97056 0.93598 1.02424 1.22759 0.99097 0.95241 0.98830 0.93056 0.91692 0.93556 0.92617 0.93270 0.77420 0.77316 0.91663 0.91684 0.85773 0.85918 0.91126 0.90697 0.90556 0.90487 0.92225 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 12.44 55.43 0.69 -24.79 16 2 C 0.06 1.72 5.37 -17.82 -0.10 1.62 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.81 8.50 -34.44 -0.29 -14.10 16 8 H 0.05 1.45 7.77 -52.48 -0.41 1.04 16 9 C 0.05 1.28 2.74 -89.60 -0.25 1.04 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.10 -2.39 5.78 -24.88 -0.14 -2.53 16 12 C -0.13 -2.68 6.59 -25.62 -0.17 -2.85 16 13 C 0.16 2.91 3.24 -66.81 -0.22 2.70 16 14 H 0.08 1.59 7.56 -51.93 -0.39 1.20 16 15 N -0.73 -11.40 4.99 -57.58 -0.29 -11.69 16 16 C 0.70 11.26 8.56 -86.92 -0.74 10.52 16 17 O -0.60 -12.13 16.00 5.29 0.08 -12.05 16 18 N -0.75 -8.69 5.39 -65.23 -0.35 -9.04 16 19 C 0.15 1.56 5.01 -4.04 -0.02 1.54 16 20 C -0.08 -0.62 2.98 -90.72 -0.27 -0.89 16 21 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 22 C -0.16 -1.23 9.73 -35.70 -0.35 -1.58 16 23 C -0.17 -1.20 10.78 -35.70 -0.38 -1.59 16 24 C -0.10 -0.63 6.81 -26.82 -0.18 -0.81 16 25 C -0.12 -0.78 6.71 -25.01 -0.17 -0.94 16 26 C -0.12 -2.41 5.93 -25.08 -0.15 -2.56 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.06 1.64 7.66 -51.93 -0.40 1.25 16 29 H 0.05 1.08 8.05 -51.93 -0.42 0.67 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 32 H 0.39 5.06 8.37 -40.82 -0.34 4.72 16 33 H 0.39 3.47 8.32 -40.82 -0.34 3.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.53 7.91 -51.93 -0.41 0.11 16 42 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -31.28 347.30 -10.38 -41.66 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.30 Total: 5.04 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.43 Total: -10.43 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.05 Total: -45.51 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.28 -10.38 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.303 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds