Wall clock time and date at job start Tue Mar 31 2020 00:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48497 * 109.46929 * 270.00160 * 3 2 1 5 5 H 1.48503 * 109.46841 * 29.99788 * 3 2 1 6 6 H 1.48492 * 109.47274 * 149.99970 * 3 2 1 7 7 C 1.37871 * 120.00376 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00444 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99624 * 0.02562 * 7 2 1 10 10 H 1.08993 * 110.81986 * 56.65868 * 9 7 2 11 11 C 1.55238 * 110.89800 * 293.21103 * 9 7 2 12 12 C 1.54266 * 104.23333 * 203.79412 * 11 9 7 13 13 C 1.53869 * 106.59800 * 23.61579 * 12 11 9 14 14 H 1.09001 * 110.02983 * 240.71432 * 13 12 11 15 15 N 1.46503 * 110.07664 * 119.30615 * 13 12 11 16 16 C 1.34775 * 119.99832 * 87.80500 * 15 13 12 17 17 O 1.21584 * 120.00418 * 0.02562 * 16 15 13 18 18 N 1.34777 * 120.00028 * 180.02562 * 16 15 13 19 19 C 1.46497 * 120.00441 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47483 * 179.97438 * 19 18 16 21 21 H 1.09001 * 110.34389 * 55.83432 * 20 19 18 22 22 C 1.51100 * 110.38911 * 293.55050 * 20 19 18 23 23 C 1.30529 * 111.10758 * 224.75146 * 22 20 19 24 24 C 1.51100 * 111.09772 * 359.97438 * 23 22 20 25 25 C 1.54628 * 110.38727 * 178.24310 * 20 19 18 26 26 C 1.54266 * 106.60031 * 359.97438 * 13 12 11 27 27 H 0.96999 * 119.99732 * 0.02562 * 1 2 3 28 28 H 1.09005 * 110.46917 * 85.10442 * 11 9 7 29 29 H 1.09007 * 110.58541 * 322.54362 * 11 9 7 30 30 H 1.08999 * 110.03060 * 264.32313 * 12 11 9 31 31 H 1.09006 * 110.06829 * 142.91691 * 12 11 9 32 32 H 0.96993 * 119.99705 * 267.80865 * 15 13 12 33 33 H 0.97003 * 119.99641 * 0.02562 * 18 16 15 34 34 H 1.08998 * 109.46917 * 300.00828 * 19 18 16 35 35 H 1.09009 * 109.46684 * 60.00237 * 19 18 16 36 36 H 1.08008 * 124.44642 * 44.76568 * 22 20 19 37 37 H 1.07995 * 124.44688 * 179.97438 * 23 22 20 38 38 H 1.09004 * 110.38527 * 135.25019 * 24 23 22 39 39 H 1.08996 * 110.38564 * 257.51002 * 24 23 22 40 40 H 1.09003 * 111.04037 * 261.47496 * 25 20 19 41 41 H 1.09000 * 111.03981 * 25.42047 * 25 20 19 42 42 H 1.09002 * 110.48629 * 95.07240 * 26 13 12 43 43 H 1.08998 * 110.48744 * 217.58143 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5728 -2.5548 -0.8508 11 6 0.4787 -2.6925 1.3332 12 6 0.2977 -4.2202 1.4483 13 6 1.4119 -4.8599 0.6015 14 1 0.9759 -5.4609 -0.1965 15 7 2.2694 -5.6946 1.4466 16 6 1.9517 -6.9868 1.6607 17 8 0.9538 -7.4599 1.1522 18 7 2.7404 -7.7546 2.4385 19 6 2.3949 -9.1590 2.6718 20 6 3.4459 -9.7987 3.5812 21 1 3.5379 -9.2344 4.5093 22 6 4.7796 -9.8707 2.8746 23 6 5.3400 -11.0370 3.0459 24 6 4.4736 -11.9371 3.8958 25 6 3.0779 -11.2710 3.8772 26 6 2.2306 -3.6986 0.0008 27 1 -0.4850 0.8401 -0.0004 28 1 -0.4906 -2.1959 1.2875 29 1 1.0615 -2.3131 2.1725 30 1 -0.6790 -4.5107 1.0614 31 1 0.3944 -4.5310 2.4887 32 1 3.0657 -5.3173 1.8519 33 1 3.5364 -7.3771 2.8445 34 1 1.4166 -9.2181 3.1489 35 1 2.3674 -9.6894 1.7198 36 1 5.2126 -9.0629 2.3031 37 1 6.2971 -11.3213 2.6343 38 1 4.4230 -12.9357 3.4618 39 1 4.8602 -11.9855 4.9137 40 1 2.5871 -11.3645 4.8460 41 1 2.4565 -11.6862 3.0838 42 1 3.0985 -3.4817 0.6235 43 1 2.5421 -3.9375 -1.0161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883673333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:46 Heat of formation + Delta-G solvation = -53.288187 kcal Electronic energy + Delta-G solvation = -21188.695903 eV Core-core repulsion = 18039.173996 eV Total energy + Delta-G solvation = -3149.521907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20958 -39.76148 -38.70265 -35.54331 -35.24713 -33.74080 -30.81196 -29.93888 -29.69128 -28.44411 -25.89518 -24.90292 -22.26825 -21.57270 -21.24161 -20.82949 -19.57247 -19.20045 -18.50262 -17.35434 -16.87817 -16.66010 -16.46175 -16.25839 -15.69921 -15.51850 -14.97595 -14.45519 -14.32614 -14.01284 -13.63540 -13.02541 -12.98081 -12.82763 -12.77134 -12.74067 -12.55154 -12.40198 -12.12953 -12.08835 -12.08119 -11.85613 -11.64487 -11.39642 -11.21389 -11.03972 -10.81756 -10.44653 -10.29098 -9.79763 -9.67857 -8.08955 -6.18811 1.38755 1.44230 1.44956 1.54757 1.78256 2.20438 2.46302 3.22348 3.35371 3.69239 3.75450 3.94739 3.96100 4.06876 4.22697 4.32837 4.38838 4.58378 4.63124 4.70145 4.75997 4.80669 4.93693 4.98433 4.99752 5.04825 5.07134 5.09621 5.17949 5.22320 5.31568 5.38936 5.41676 5.54057 5.66515 5.66895 5.72155 5.92979 5.99975 6.00298 6.09493 6.39362 6.92318 7.17116 7.48916 7.64794 9.00386 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040039 B = 0.002785 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.151641 B =10050.142431 C =10456.208457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.001 0.999 11 C -0.092 4.092 12 C -0.123 4.123 13 C 0.170 3.830 14 H 0.067 0.933 15 N -0.724 5.724 16 C 0.697 3.303 17 O -0.640 6.640 18 N -0.732 5.732 19 C 0.151 3.849 20 C -0.071 4.071 21 H 0.097 0.903 22 C -0.176 4.176 23 C -0.168 4.168 24 C -0.102 4.102 25 C -0.119 4.119 26 C -0.106 4.106 27 H 0.259 0.741 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.410 0.590 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.249 -21.106 9.895 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.022 3.978 10 H 0.019 0.981 11 C -0.131 4.131 12 C -0.162 4.162 13 C 0.064 3.936 14 H 0.085 0.915 15 N -0.379 5.379 16 C 0.397 3.603 17 O -0.522 6.522 18 N -0.388 5.388 19 C 0.027 3.973 20 C -0.090 4.090 21 H 0.115 0.885 22 C -0.194 4.194 23 C -0.185 4.185 24 C -0.139 4.139 25 C -0.157 4.157 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.198 -21.444 9.445 25.555 hybrid contribution 0.589 1.569 0.030 1.676 sum 10.787 -19.875 9.475 24.519 Atomic orbital electron populations 1.70106 1.07415 1.27149 1.51515 1.25803 0.95601 1.02579 0.94961 0.85613 0.78847 0.79422 0.78107 1.20370 1.21371 1.18775 1.21482 0.93151 0.91555 1.50240 0.92144 1.19578 0.92950 0.92260 0.93002 0.98096 1.22180 0.99394 0.92526 0.98986 1.22518 0.97991 0.96259 0.99453 1.21306 0.90461 0.90375 0.91467 0.91504 1.45206 1.29936 1.08841 1.53902 1.16199 0.82880 0.81494 0.79715 1.90875 1.30096 1.74334 1.56902 1.44975 1.29125 1.11640 1.53069 1.21214 0.97981 0.79257 0.98886 1.21259 0.92123 0.97596 0.97974 0.88465 1.23338 0.96588 0.98797 1.00655 1.23524 1.00277 0.95836 0.98903 1.21415 0.93453 0.98942 1.00050 1.22513 0.97492 0.92747 1.02916 1.22555 0.98476 0.93535 0.99846 0.93210 0.94783 0.93961 0.93312 0.91976 0.75491 0.75341 0.92538 0.93116 0.85741 0.84981 0.90427 0.89650 0.89361 0.91000 0.90637 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 12.44 21.45 0.27 -53.79 16 2 C 0.01 0.50 5.37 84.65 0.45 0.96 16 3 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.53 -28.26 8.50 25.60 0.22 -28.04 16 8 H 0.06 3.11 7.77 -2.91 -0.02 3.09 16 9 C 0.04 2.03 2.74 -10.13 -0.03 2.00 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 11 C -0.09 -4.34 5.78 31.79 0.18 -4.16 16 12 C -0.12 -4.90 6.59 31.32 0.21 -4.69 16 13 C 0.17 6.19 3.24 45.71 0.15 6.34 16 14 H 0.07 2.66 7.56 -2.39 -0.02 2.64 16 15 N -0.72 -21.12 4.99 -454.36 -2.27 -23.39 16 16 C 0.70 21.50 8.56 179.05 1.53 23.03 16 17 O -0.64 -25.85 16.00 -3.98 -0.06 -25.92 16 18 N -0.73 -15.57 5.39 -478.54 -2.58 -18.15 16 19 C 0.15 2.97 5.01 86.38 0.43 3.40 16 20 C -0.07 -0.94 2.98 -10.86 -0.03 -0.98 16 21 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 22 C -0.18 -2.36 9.73 26.26 0.26 -2.11 16 23 C -0.17 -2.02 10.78 26.26 0.28 -1.73 16 24 C -0.10 -1.02 6.81 30.54 0.21 -0.81 16 25 C -0.12 -1.34 6.71 31.71 0.21 -1.12 16 26 C -0.11 -4.11 5.93 31.66 0.19 -3.92 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.03 1.77 7.66 -2.38 -0.02 1.76 16 29 H 0.04 1.98 8.05 -2.38 -0.02 1.96 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.30 7.92 -2.38 -0.02 2.28 16 32 H 0.41 9.35 8.37 -92.71 -0.78 8.57 16 33 H 0.41 6.13 8.32 -92.71 -0.77 5.36 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.12 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.89 7.91 -2.39 -0.02 0.87 16 42 H 0.08 2.69 7.63 -2.39 -0.02 2.67 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -67.86 347.30 1.09 -66.76 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.55 Total: 21.19 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.26 Total: -11.85 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -4.58 Total: -95.33 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.06 Total: -25.92 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.86 1.09 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.475 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds