Wall clock time and date at job start Tue Mar 31 2020 00:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48504 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00066 * 3 2 1 6 6 H 1.48506 * 109.46833 * 60.00524 * 3 2 1 7 7 C 1.37876 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45859 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31065 * 181.38629 * 10 9 7 12 12 N 1.46919 * 108.77621 * 305.36263 * 11 10 9 13 13 C 1.34772 * 120.63325 * 233.63084 * 12 11 10 14 14 O 1.21583 * 120.00247 * 174.76939 * 13 12 11 15 15 N 1.34778 * 119.99582 * 354.77141 * 13 12 11 16 16 C 1.46505 * 119.99770 * 184.97914 * 15 13 12 17 17 C 1.52997 * 109.47239 * 179.97438 * 16 15 13 18 18 H 1.09006 * 110.34029 * 52.71592 * 17 16 15 19 19 C 1.51095 * 110.39138 * 290.30851 * 17 16 15 20 20 C 1.30526 * 111.10823 * 224.75060 * 19 17 16 21 21 C 1.51105 * 111.10297 * 359.97438 * 20 19 17 22 22 C 1.54633 * 110.38904 * 175.00124 * 17 16 15 23 23 C 1.46934 * 118.73910 * 53.60894 * 12 11 10 24 24 C 1.53044 * 109.45876 * 300.07045 * 9 7 2 25 25 H 0.97006 * 120.00039 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.44622 * 60.03739 * 9 7 2 27 27 H 1.08997 * 109.50262 * 61.43214 * 10 9 7 28 28 H 1.09002 * 109.49645 * 301.33501 * 10 9 7 29 29 H 1.09004 * 109.58722 * 65.14739 * 11 10 9 30 30 H 1.08997 * 109.58819 * 185.57090 * 11 10 9 31 31 H 0.96997 * 120.00601 * 4.98231 * 15 13 12 32 32 H 1.09001 * 109.47578 * 300.00372 * 16 15 13 33 33 H 1.09007 * 109.46952 * 60.00379 * 16 15 13 34 34 H 1.08004 * 124.44788 * 44.75219 * 19 17 16 35 35 H 1.08004 * 124.45252 * 179.97438 * 20 19 17 36 36 H 1.08998 * 110.38768 * 257.62938 * 21 20 19 37 37 H 1.08994 * 110.48469 * 135.29757 * 21 20 19 38 38 H 1.09004 * 111.03970 * 261.48197 * 22 17 16 39 39 H 1.08993 * 111.03690 * 25.41679 * 22 17 16 40 40 H 1.09004 * 109.58656 * 186.60446 * 23 12 11 41 41 H 1.08994 * 109.70393 * 66.24796 * 23 12 11 42 42 H 1.08998 * 109.49888 * 298.56560 * 24 9 7 43 43 H 1.08998 * 109.49473 * 58.66214 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6621 -0.0005 11 6 1.4766 -4.9866 -0.0355 12 7 0.5223 -5.0089 1.0813 13 6 0.5119 -6.0347 1.9554 14 8 -0.2161 -5.9970 2.9284 15 7 1.3087 -7.1023 1.7508 16 6 1.2191 -8.2640 2.6389 17 6 2.2230 -9.3278 2.1901 18 1 3.2196 -8.8950 2.1020 19 6 1.7928 -9.9363 0.8757 20 6 1.9108 -11.2360 0.8985 21 6 2.4399 -11.7110 2.2318 22 6 2.2355 -10.5109 3.1856 23 6 -0.4204 -3.8913 1.2275 24 6 0.3704 -2.5794 1.2486 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5566 -0.8908 27 1 2.8556 -3.6193 0.9018 28 1 2.8883 -3.5913 -0.8782 29 1 0.9371 -5.0711 -0.9789 30 1 2.1751 -5.8174 0.0640 31 1 1.9414 -7.1016 1.0156 32 1 1.4451 -7.9587 3.6606 33 1 0.2108 -8.6761 2.5975 34 1 1.4348 -9.3702 0.0285 35 1 1.6628 -11.8867 0.0729 36 1 3.4985 -11.9586 2.1538 37 1 1.8736 -12.5741 2.5814 38 1 3.0651 -10.4232 3.8872 39 1 1.2852 -10.5879 3.7137 40 1 -0.9736 -3.9995 2.1605 41 1 -1.1163 -3.8854 0.3886 42 1 0.9982 -2.5469 2.1390 43 1 -0.3221 -1.7377 1.2602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883781960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:38 Heat of formation + Delta-G solvation = -20.115608 kcal Electronic energy + Delta-G solvation = -21812.140077 eV Core-core repulsion = 18664.056641 eV Total energy + Delta-G solvation = -3148.083436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05030 -38.94344 -36.86123 -34.46217 -33.46241 -31.12541 -30.42436 -29.52040 -28.91370 -26.15478 -24.29248 -22.92277 -22.07048 -21.00252 -20.08233 -18.96140 -18.76563 -17.67362 -16.41425 -16.25569 -15.87805 -15.27780 -15.08641 -14.55692 -14.07104 -13.72503 -13.51719 -13.13987 -12.78369 -12.64970 -12.27134 -12.19515 -12.12859 -12.06492 -11.76215 -11.51688 -11.39505 -11.16412 -11.06998 -10.93522 -10.61468 -10.40978 -10.04151 -9.72175 -9.54462 -9.18876 -9.15746 -8.91767 -8.84651 -8.35456 -7.84880 -6.00446 -4.07132 2.01167 3.06420 3.28611 3.37103 3.40327 3.61538 4.19920 4.33425 4.42341 4.42600 4.63865 4.96172 5.12137 5.22509 5.26906 5.29343 5.39789 5.47796 5.57052 5.69771 5.74614 5.78165 5.83050 5.90931 6.02399 6.09355 6.25975 6.30658 6.44611 6.52128 6.62016 6.64070 6.71724 6.84728 7.00609 7.18364 7.27780 7.52882 7.73288 7.95393 8.08503 8.36059 8.42147 8.96375 9.00135 9.57918 11.04906 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039124 B = 0.003267 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.499726 B = 8567.540094 C = 8845.227691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.619 5.619 13 C 0.704 3.296 14 O -0.602 6.602 15 N -0.752 5.752 16 C 0.150 3.850 17 C -0.081 4.081 18 H 0.088 0.912 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.101 4.101 22 C -0.117 4.117 23 C 0.126 3.874 24 C -0.123 4.123 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.394 0.606 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -20.299 1.401 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.406 3.594 14 O -0.481 6.481 15 N -0.411 5.411 16 C 0.025 3.975 17 C -0.100 4.100 18 H 0.106 0.894 19 C -0.175 4.175 20 C -0.188 4.188 21 C -0.138 4.138 22 C -0.155 4.155 23 C 0.004 3.996 24 C -0.162 4.162 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.639 -20.140 2.115 20.575 hybrid contribution 0.823 0.979 -0.529 1.384 sum 4.462 -19.161 1.586 19.738 Atomic orbital electron populations 1.69856 1.05845 1.26352 1.50813 1.24967 0.94861 0.99069 0.95116 0.86570 0.80118 0.83935 0.77555 1.19879 1.21071 1.21059 1.21224 0.92885 0.90610 1.50360 0.92727 1.18626 0.92574 0.91512 0.94200 1.22014 0.98951 0.94386 1.00865 1.21698 0.91148 0.98897 0.89207 1.47443 1.38026 1.21552 1.28487 1.15876 0.80796 0.79961 0.82815 1.90859 1.45931 1.81111 1.30209 1.45289 1.43353 1.17052 1.35419 1.21130 0.98794 0.84027 0.93558 1.21319 0.99408 0.95701 0.93559 0.89403 1.23292 1.00141 0.95998 0.98092 1.23271 1.00590 0.96413 0.98498 1.21366 1.00987 0.98363 0.93060 1.22469 1.02718 0.93299 0.97035 1.21757 0.90886 0.85733 1.01216 1.22018 1.00051 0.94944 0.99173 0.93013 0.95489 0.92920 0.92196 0.91981 0.92350 0.76953 0.91676 0.91842 0.85787 0.85942 0.90737 0.91171 0.90573 0.90527 0.90580 0.92604 0.94364 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.31 55.43 0.63 -24.27 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 10 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 11 C 0.11 1.84 6.39 -3.71 -0.02 1.82 16 12 N -0.62 -11.49 2.97 -178.50 -0.53 -12.02 16 13 C 0.70 13.03 8.29 -86.92 -0.72 12.31 16 14 O -0.60 -13.29 15.77 5.29 0.08 -13.21 16 15 N -0.75 -10.42 5.34 -65.22 -0.35 -10.77 16 16 C 0.15 1.78 5.00 -4.04 -0.02 1.76 16 17 C -0.08 -0.72 2.94 -90.72 -0.27 -0.99 16 18 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 19 C -0.16 -1.39 9.88 -35.70 -0.35 -1.74 16 20 C -0.17 -1.34 10.77 -35.70 -0.38 -1.73 16 21 C -0.10 -0.70 6.81 -26.82 -0.18 -0.88 16 22 C -0.12 -0.88 6.71 -25.00 -0.17 -1.05 16 23 C 0.13 2.60 6.44 -3.71 -0.02 2.58 16 24 C -0.12 -2.90 5.15 -26.61 -0.14 -3.04 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.75 5.65 -51.93 -0.29 0.46 16 31 H 0.39 4.60 5.89 -40.82 -0.24 4.36 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 40 H 0.08 1.62 7.00 -51.93 -0.36 1.26 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -30.61 338.19 -10.17 -40.79 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.08 Total: 3.32 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.00 Total: -4.96 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.25 Total: -47.07 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.61 -10.17 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883781960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.671 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds