Wall clock time and date at job start Tue Mar 31 2020 00:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00000 * 2 1 4 4 H 1.48504 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00066 * 3 2 1 6 6 H 1.48506 * 109.46833 * 60.00524 * 3 2 1 7 7 C 1.37876 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00299 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45859 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31065 * 181.38629 * 10 9 7 12 12 N 1.46919 * 108.77621 * 305.36263 * 11 10 9 13 13 C 1.34772 * 120.63325 * 233.63084 * 12 11 10 14 14 O 1.21583 * 120.00247 * 174.76939 * 13 12 11 15 15 N 1.34778 * 119.99582 * 354.77141 * 13 12 11 16 16 C 1.46505 * 119.99770 * 184.97914 * 15 13 12 17 17 C 1.52997 * 109.47239 * 179.97438 * 16 15 13 18 18 H 1.09006 * 110.34029 * 52.71592 * 17 16 15 19 19 C 1.51095 * 110.39138 * 290.30851 * 17 16 15 20 20 C 1.30526 * 111.10823 * 224.75060 * 19 17 16 21 21 C 1.51105 * 111.10297 * 359.97438 * 20 19 17 22 22 C 1.54633 * 110.38904 * 175.00124 * 17 16 15 23 23 C 1.46934 * 118.73910 * 53.60894 * 12 11 10 24 24 C 1.53044 * 109.45876 * 300.07045 * 9 7 2 25 25 H 0.97006 * 120.00039 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.44622 * 60.03739 * 9 7 2 27 27 H 1.08997 * 109.50262 * 61.43214 * 10 9 7 28 28 H 1.09002 * 109.49645 * 301.33501 * 10 9 7 29 29 H 1.09004 * 109.58722 * 65.14739 * 11 10 9 30 30 H 1.08997 * 109.58819 * 185.57090 * 11 10 9 31 31 H 0.96997 * 120.00601 * 4.98231 * 15 13 12 32 32 H 1.09001 * 109.47578 * 300.00372 * 16 15 13 33 33 H 1.09007 * 109.46952 * 60.00379 * 16 15 13 34 34 H 1.08004 * 124.44788 * 44.75219 * 19 17 16 35 35 H 1.08004 * 124.45252 * 179.97438 * 20 19 17 36 36 H 1.08998 * 110.38768 * 257.62938 * 21 20 19 37 37 H 1.08994 * 110.48469 * 135.29757 * 21 20 19 38 38 H 1.09004 * 111.03970 * 261.48197 * 22 17 16 39 39 H 1.08993 * 111.03690 * 25.41679 * 22 17 16 40 40 H 1.09004 * 109.58656 * 186.60446 * 23 12 11 41 41 H 1.08994 * 109.70393 * 66.24796 * 23 12 11 42 42 H 1.08998 * 109.49888 * 298.56560 * 24 9 7 43 43 H 1.08998 * 109.49473 * 58.66214 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6621 -0.0005 11 6 1.4766 -4.9866 -0.0355 12 7 0.5223 -5.0089 1.0813 13 6 0.5119 -6.0347 1.9554 14 8 -0.2161 -5.9970 2.9284 15 7 1.3087 -7.1023 1.7508 16 6 1.2191 -8.2640 2.6389 17 6 2.2230 -9.3278 2.1901 18 1 3.2196 -8.8950 2.1020 19 6 1.7928 -9.9363 0.8757 20 6 1.9108 -11.2360 0.8985 21 6 2.4399 -11.7110 2.2318 22 6 2.2355 -10.5109 3.1856 23 6 -0.4204 -3.8913 1.2275 24 6 0.3704 -2.5794 1.2486 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5566 -0.8908 27 1 2.8556 -3.6193 0.9018 28 1 2.8883 -3.5913 -0.8782 29 1 0.9371 -5.0711 -0.9789 30 1 2.1751 -5.8174 0.0640 31 1 1.9414 -7.1016 1.0156 32 1 1.4451 -7.9587 3.6606 33 1 0.2108 -8.6761 2.5975 34 1 1.4348 -9.3702 0.0285 35 1 1.6628 -11.8867 0.0729 36 1 3.4985 -11.9586 2.1538 37 1 1.8736 -12.5741 2.5814 38 1 3.0651 -10.4232 3.8872 39 1 1.2852 -10.5879 3.7137 40 1 -0.9736 -3.9995 2.1605 41 1 -1.1163 -3.8854 0.3886 42 1 0.9982 -2.5469 2.1390 43 1 -0.3221 -1.7377 1.2602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883781960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:37 Heat of formation + Delta-G solvation = -37.326556 kcal Electronic energy + Delta-G solvation = -21812.886400 eV Core-core repulsion = 18664.056641 eV Total energy + Delta-G solvation = -3148.829759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42152 -39.75086 -38.45223 -35.72944 -35.27001 -32.91606 -31.89894 -30.50035 -29.64701 -27.93668 -25.43049 -24.51000 -23.68727 -21.90465 -21.47771 -20.27454 -19.60717 -19.08902 -18.31333 -17.36540 -16.87903 -16.56648 -16.43946 -16.14711 -15.26391 -15.11367 -14.87570 -14.77541 -14.44536 -14.18095 -13.78067 -13.42826 -13.03700 -12.94051 -12.82374 -12.78565 -12.72837 -12.43133 -12.16373 -12.13517 -12.07275 -11.91432 -11.84943 -11.43447 -11.30583 -10.92168 -10.78614 -10.40818 -10.19001 -9.78503 -9.37097 -8.06984 -6.20863 1.39525 1.40291 1.43206 1.53197 1.72685 2.14985 2.44245 2.96858 3.19647 3.69277 3.74064 3.93064 4.09410 4.24628 4.32561 4.34303 4.38850 4.50358 4.59282 4.59576 4.64347 4.72251 4.77757 4.90802 4.97619 4.99322 5.00708 5.06663 5.19906 5.22206 5.24968 5.39535 5.47488 5.50989 5.54070 5.65881 5.68493 5.98880 6.01180 6.07861 6.12944 6.39242 6.90929 7.01726 7.47296 7.57387 8.96585 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039124 B = 0.003267 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.499726 B = 8567.540094 C = 8845.227691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.622 5.622 13 C 0.700 3.300 14 O -0.642 6.642 15 N -0.732 5.732 16 C 0.150 3.850 17 C -0.072 4.072 18 H 0.095 0.905 19 C -0.177 4.177 20 C -0.164 4.164 21 C -0.101 4.101 22 C -0.118 4.118 23 C 0.138 3.862 24 C -0.111 4.111 25 H 0.260 0.740 26 H 0.005 0.995 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.407 0.593 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -22.169 0.763 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.155 4.155 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.401 3.599 14 O -0.524 6.524 15 N -0.391 5.391 16 C 0.026 3.974 17 C -0.091 4.091 18 H 0.113 0.887 19 C -0.195 4.195 20 C -0.182 4.182 21 C -0.138 4.138 22 C -0.156 4.156 23 C 0.015 3.985 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.023 0.977 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.246 0.754 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.355 -22.048 1.450 22.735 hybrid contribution 0.301 1.523 -0.321 1.585 sum 5.656 -20.525 1.129 21.320 Atomic orbital electron populations 1.69986 1.07058 1.26993 1.51500 1.25718 0.95660 1.02286 0.95010 0.85621 0.79179 0.80102 0.77420 1.19154 1.20591 1.21135 1.21617 0.93052 0.92159 1.50075 0.92929 1.18604 0.93115 0.92567 0.93008 1.21875 0.98147 0.94281 1.01154 1.21809 0.91200 0.98470 0.88936 1.47393 1.38126 1.21032 1.29264 1.16065 0.80999 0.80668 0.82160 1.90831 1.47752 1.81987 1.31874 1.45170 1.42136 1.16074 1.35722 1.21251 0.99373 0.83910 0.92871 1.21270 0.98595 0.95070 0.94135 0.88666 1.23318 1.01611 0.96493 0.98075 1.23522 0.99238 0.96294 0.99166 1.21411 1.01792 0.98289 0.92282 1.22512 1.03080 0.92897 0.97104 1.21413 0.90913 0.85233 1.00947 1.21782 0.99319 0.95611 0.98328 0.93079 0.97664 0.93736 0.90683 0.90569 0.88185 0.75379 0.92652 0.92894 0.85891 0.84805 0.89628 0.90252 0.89410 0.90920 0.91647 0.92015 0.96221 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 11.31 21.45 0.24 -52.13 16 2 C 0.01 0.65 5.30 84.66 0.45 1.09 16 3 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.53 -28.63 8.56 25.60 0.22 -28.41 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.20 2.06 -11.51 -0.02 2.17 16 10 C -0.12 -4.35 5.30 30.67 0.16 -4.19 16 11 C 0.12 3.53 6.39 86.36 0.55 4.08 16 12 N -0.62 -22.51 2.97 -836.91 -2.49 -25.00 16 13 C 0.70 25.26 8.29 179.06 1.49 26.75 16 14 O -0.64 -28.49 15.77 -3.98 -0.06 -28.55 16 15 N -0.73 -18.92 5.34 -478.53 -2.55 -21.47 16 16 C 0.15 3.37 5.00 86.38 0.43 3.81 16 17 C -0.07 -1.12 2.94 -10.86 -0.03 -1.15 16 18 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 19 C -0.18 -2.69 9.88 26.26 0.26 -2.43 16 20 C -0.16 -2.16 10.77 26.26 0.28 -1.87 16 21 C -0.10 -1.11 6.81 30.54 0.21 -0.90 16 22 C -0.12 -1.50 6.71 31.71 0.21 -1.29 16 23 C 0.14 5.79 6.44 86.36 0.56 6.35 16 24 C -0.11 -5.40 5.15 30.67 0.16 -5.25 16 25 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.10 2.17 5.65 -2.39 -0.01 2.15 16 31 H 0.41 8.25 5.89 -92.71 -0.55 7.70 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.32 8.13 -2.38 -0.02 1.30 16 34 H 0.12 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.13 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 0.99 7.91 -2.39 -0.02 0.97 16 40 H 0.07 2.87 7.00 -2.38 -0.02 2.85 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 3.96 6.03 -2.39 -0.01 3.94 16 Total: -1.00 -67.12 338.19 2.52 -64.60 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.44 Total: 18.36 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.92 Total: -1.25 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -4.80 Total: -98.59 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.06 Total: -28.55 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.12 2.52 -64.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883781960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.270 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds