Wall clock time and date at job start Tue Mar 31 2020 00:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99978 * 2 1 4 4 H 1.48494 * 109.47328 * 270.00856 * 3 2 1 5 5 H 1.48503 * 109.47046 * 30.00577 * 3 2 1 6 6 H 1.48500 * 109.46976 * 150.00383 * 3 2 1 7 7 C 1.37876 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46053 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31406 * 178.61758 * 10 9 7 12 12 N 1.46922 * 108.77424 * 54.63199 * 11 10 9 13 13 C 1.34780 * 120.62858 * 126.37400 * 12 11 10 14 14 O 1.21584 * 119.99968 * 185.22652 * 13 12 11 15 15 N 1.34782 * 119.99898 * 5.22055 * 13 12 11 16 16 C 1.46496 * 119.99546 * 175.01813 * 15 13 12 17 17 C 1.53004 * 109.46786 * 179.72738 * 16 15 13 18 18 H 1.09004 * 110.34426 * 307.28431 * 17 16 15 19 19 C 1.51098 * 110.38813 * 69.69473 * 17 16 15 20 20 C 1.30530 * 111.10328 * 135.25398 * 19 17 16 21 21 C 1.51096 * 111.10539 * 359.97438 * 20 19 17 22 22 C 1.54632 * 104.72556 * 343.57137 * 21 20 19 23 23 C 1.46927 * 118.74329 * 306.64380 * 12 11 10 24 24 C 1.52760 * 109.00494 * 53.30900 * 23 12 11 25 25 H 0.96998 * 120.00348 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.44977 * 299.97158 * 9 7 2 27 27 H 1.08997 * 109.50009 * 58.66284 * 10 9 7 28 28 H 1.09001 * 109.52547 * 298.58206 * 10 9 7 29 29 H 1.09004 * 109.58390 * 294.84837 * 11 10 9 30 30 H 1.09003 * 109.58815 * 174.42434 * 11 10 9 31 31 H 0.96995 * 119.99704 * 354.73733 * 15 13 12 32 32 H 1.09001 * 109.47019 * 299.72234 * 16 15 13 33 33 H 1.08996 * 109.47564 * 59.72521 * 16 15 13 34 34 H 1.08005 * 124.44963 * 315.22400 * 19 17 16 35 35 H 1.08000 * 124.44608 * 180.02562 * 20 19 17 36 36 H 1.08997 * 110.38890 * 224.75726 * 21 20 19 37 37 H 1.09002 * 110.47808 * 102.42747 * 21 20 19 38 38 H 1.09003 * 111.03645 * 266.59622 * 22 21 20 39 39 H 1.09002 * 111.07289 * 142.67513 * 22 21 20 40 40 H 1.08997 * 109.58789 * 173.14208 * 23 12 11 41 41 H 1.09003 * 109.58463 * 293.57421 * 23 12 11 42 42 H 1.09002 * 109.56752 * 185.55170 * 24 23 12 43 43 H 1.09008 * 109.38820 * 65.51873 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0343 12 7 0.5224 -5.0088 -1.0825 13 6 0.5121 -6.0347 -1.9566 14 8 -0.2160 -5.9970 -2.9296 15 7 1.3090 -7.1023 -1.7521 16 6 1.2193 -8.2639 -2.6403 17 6 2.2286 -9.3245 -2.1960 18 1 3.2242 -8.8887 -2.1121 19 6 1.8059 -9.9349 -0.8800 20 6 1.9281 -11.2343 -0.9038 21 6 2.4521 -11.7071 -2.2399 22 6 2.2400 -10.5074 -3.1921 23 6 -0.4165 -3.8886 -1.2319 24 6 0.3700 -2.5792 -1.2493 25 1 -0.4850 0.8400 0.0004 26 1 0.6253 -2.5569 0.8900 27 1 2.8884 -3.5913 0.8770 28 1 2.8561 -3.6195 -0.9027 29 1 0.9373 -5.0711 0.9777 30 1 2.1753 -5.8175 -0.0652 31 1 1.9446 -7.0998 -1.0195 32 1 0.2125 -8.6790 -2.5950 33 1 1.4404 -7.9576 -3.6627 34 1 1.4499 -9.3702 -0.0310 35 1 1.6857 -11.8859 -0.0774 36 1 1.8852 -12.5714 -2.5858 37 1 3.5117 -11.9526 -2.1687 38 1 1.2874 -10.5873 -3.7160 39 1 3.0657 -10.4164 -3.8979 40 1 -0.9668 -3.9952 -2.1667 41 1 -1.1135 -3.8818 -0.3938 42 1 -0.3225 -1.7375 -1.2606 43 1 0.9975 -2.5459 -2.1401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883781961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:41 Heat of formation + Delta-G solvation = -20.148051 kcal Electronic energy + Delta-G solvation = -21812.749996 eV Core-core repulsion = 18664.665153 eV Total energy + Delta-G solvation = -3148.084843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05198 -38.94477 -36.87059 -34.46311 -33.46149 -31.12655 -30.43979 -29.52639 -28.91610 -26.15911 -24.29280 -22.92343 -22.06300 -21.00244 -20.08721 -18.96045 -18.76286 -17.67159 -16.41407 -16.25525 -15.87756 -15.27520 -15.08980 -14.56027 -14.07239 -13.72299 -13.51962 -13.14231 -12.78445 -12.65311 -12.27115 -12.19501 -12.12940 -12.06471 -11.76372 -11.51892 -11.39455 -11.16421 -11.06736 -10.91844 -10.64753 -10.40871 -10.03938 -9.72229 -9.53687 -9.18865 -9.15930 -8.91893 -8.84986 -8.35194 -7.85120 -6.00295 -4.07064 2.01180 3.06388 3.29762 3.36840 3.39173 3.61492 4.19902 4.33542 4.42340 4.42581 4.63829 4.96305 5.12105 5.22455 5.26915 5.29387 5.39787 5.47839 5.57108 5.69820 5.74646 5.78137 5.83058 5.90930 6.02418 6.09459 6.25942 6.30319 6.45224 6.52951 6.62047 6.64015 6.71856 6.84747 7.00690 7.18258 7.27557 7.52888 7.73121 7.95435 8.08454 8.36033 8.42187 8.96191 9.00111 9.57910 11.05072 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039081 B = 0.003268 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.296994 B = 8565.757960 C = 8844.951546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.619 5.619 13 C 0.704 3.296 14 O -0.602 6.602 15 N -0.752 5.752 16 C 0.150 3.850 17 C -0.081 4.081 18 H 0.088 0.912 19 C -0.157 4.157 20 C -0.170 4.170 21 C -0.101 4.101 22 C -0.117 4.117 23 C 0.127 3.873 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.394 0.606 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -20.278 -1.414 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.355 5.355 13 C 0.406 3.594 14 O -0.481 6.481 15 N -0.411 5.411 16 C 0.025 3.975 17 C -0.100 4.100 18 H 0.106 0.894 19 C -0.175 4.175 20 C -0.188 4.188 21 C -0.138 4.138 22 C -0.155 4.155 23 C 0.005 3.995 24 C -0.163 4.163 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.639 -20.118 -2.120 20.554 hybrid contribution 0.843 0.980 0.514 1.391 sum 4.482 -19.138 -1.607 19.722 Atomic orbital electron populations 1.69844 1.05846 1.26472 1.50720 1.24965 0.94860 0.99055 0.95102 0.86622 0.79846 0.83600 0.78078 1.20745 1.21256 1.20007 1.21186 0.92849 0.90627 1.50497 0.92781 1.18617 0.92563 0.91493 0.94185 1.22015 0.98954 0.94394 1.00868 1.21700 0.91146 0.98889 0.89220 1.47448 1.38183 1.21427 1.28447 1.15879 0.80818 0.79965 0.82786 1.90859 1.45942 1.81107 1.30202 1.45287 1.43159 1.17064 1.35602 1.21130 0.98756 0.84052 0.93572 1.21325 0.99396 0.95715 0.93551 0.89400 1.23295 1.00146 0.95995 0.98085 1.23270 1.00603 0.96421 0.98479 1.21360 1.00999 0.98367 0.93046 1.22468 1.02715 0.93306 0.97034 1.21668 0.90960 0.85692 1.01212 1.21949 1.00126 0.94995 0.99193 0.92951 0.95489 0.92192 0.92930 0.91970 0.92352 0.76951 0.91838 0.91681 0.85784 0.85942 0.91179 0.90730 0.90532 0.90573 0.90571 0.92629 0.87853 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.31 55.43 0.63 -24.29 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 10 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 11 C 0.11 1.84 6.39 -3.71 -0.02 1.82 16 12 N -0.62 -11.50 2.98 -178.76 -0.53 -12.03 16 13 C 0.70 13.03 8.30 -86.91 -0.72 12.31 16 14 O -0.60 -13.29 15.77 5.29 0.08 -13.21 16 15 N -0.75 -10.43 5.34 -65.22 -0.35 -10.77 16 16 C 0.15 1.78 5.00 -4.04 -0.02 1.76 16 17 C -0.08 -0.72 2.94 -90.71 -0.27 -0.99 16 18 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 19 C -0.16 -1.38 9.88 -35.70 -0.35 -1.74 16 20 C -0.17 -1.34 10.77 -35.70 -0.38 -1.73 16 21 C -0.10 -0.70 6.81 -26.83 -0.18 -0.88 16 22 C -0.12 -0.88 6.71 -25.01 -0.17 -1.05 16 23 C 0.13 2.62 6.41 -3.93 -0.03 2.59 16 24 C -0.12 -2.92 5.14 -26.83 -0.14 -3.06 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 31 H 0.39 4.60 5.89 -40.82 -0.24 4.36 16 32 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.10 2.70 6.03 -51.93 -0.31 2.39 16 43 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -30.60 338.15 -10.18 -40.77 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.08 Total: 3.36 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.00 Total: -4.97 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.25 Total: -47.09 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.60 -10.18 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883781961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.626 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds