Wall clock time and date at job start Tue Mar 31 2020 00:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99978 * 2 1 4 4 H 1.48494 * 109.47328 * 270.00856 * 3 2 1 5 5 H 1.48503 * 109.47046 * 30.00577 * 3 2 1 6 6 H 1.48500 * 109.46976 * 150.00383 * 3 2 1 7 7 C 1.37876 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46053 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31406 * 178.61758 * 10 9 7 12 12 N 1.46922 * 108.77424 * 54.63199 * 11 10 9 13 13 C 1.34780 * 120.62858 * 126.37400 * 12 11 10 14 14 O 1.21584 * 119.99968 * 185.22652 * 13 12 11 15 15 N 1.34782 * 119.99898 * 5.22055 * 13 12 11 16 16 C 1.46496 * 119.99546 * 175.01813 * 15 13 12 17 17 C 1.53004 * 109.46786 * 179.72738 * 16 15 13 18 18 H 1.09004 * 110.34426 * 307.28431 * 17 16 15 19 19 C 1.51098 * 110.38813 * 69.69473 * 17 16 15 20 20 C 1.30530 * 111.10328 * 135.25398 * 19 17 16 21 21 C 1.51096 * 111.10539 * 359.97438 * 20 19 17 22 22 C 1.54632 * 104.72556 * 343.57137 * 21 20 19 23 23 C 1.46927 * 118.74329 * 306.64380 * 12 11 10 24 24 C 1.52760 * 109.00494 * 53.30900 * 23 12 11 25 25 H 0.96998 * 120.00348 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.44977 * 299.97158 * 9 7 2 27 27 H 1.08997 * 109.50009 * 58.66284 * 10 9 7 28 28 H 1.09001 * 109.52547 * 298.58206 * 10 9 7 29 29 H 1.09004 * 109.58390 * 294.84837 * 11 10 9 30 30 H 1.09003 * 109.58815 * 174.42434 * 11 10 9 31 31 H 0.96995 * 119.99704 * 354.73733 * 15 13 12 32 32 H 1.09001 * 109.47019 * 299.72234 * 16 15 13 33 33 H 1.08996 * 109.47564 * 59.72521 * 16 15 13 34 34 H 1.08005 * 124.44963 * 315.22400 * 19 17 16 35 35 H 1.08000 * 124.44608 * 180.02562 * 20 19 17 36 36 H 1.08997 * 110.38890 * 224.75726 * 21 20 19 37 37 H 1.09002 * 110.47808 * 102.42747 * 21 20 19 38 38 H 1.09003 * 111.03645 * 266.59622 * 22 21 20 39 39 H 1.09002 * 111.07289 * 142.67513 * 22 21 20 40 40 H 1.08997 * 109.58789 * 173.14208 * 23 12 11 41 41 H 1.09003 * 109.58463 * 293.57421 * 23 12 11 42 42 H 1.09002 * 109.56752 * 185.55170 * 24 23 12 43 43 H 1.09008 * 109.38820 * 65.51873 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0343 12 7 0.5224 -5.0088 -1.0825 13 6 0.5121 -6.0347 -1.9566 14 8 -0.2160 -5.9970 -2.9296 15 7 1.3090 -7.1023 -1.7521 16 6 1.2193 -8.2639 -2.6403 17 6 2.2286 -9.3245 -2.1960 18 1 3.2242 -8.8887 -2.1121 19 6 1.8059 -9.9349 -0.8800 20 6 1.9281 -11.2343 -0.9038 21 6 2.4521 -11.7071 -2.2399 22 6 2.2400 -10.5074 -3.1921 23 6 -0.4165 -3.8886 -1.2319 24 6 0.3700 -2.5792 -1.2493 25 1 -0.4850 0.8400 0.0004 26 1 0.6253 -2.5569 0.8900 27 1 2.8884 -3.5913 0.8770 28 1 2.8561 -3.6195 -0.9027 29 1 0.9373 -5.0711 0.9777 30 1 2.1753 -5.8175 -0.0652 31 1 1.9446 -7.0998 -1.0195 32 1 0.2125 -8.6790 -2.5950 33 1 1.4404 -7.9576 -3.6627 34 1 1.4499 -9.3702 -0.0310 35 1 1.6857 -11.8859 -0.0774 36 1 1.8852 -12.5714 -2.5858 37 1 3.5117 -11.9526 -2.1687 38 1 1.2874 -10.5873 -3.7160 39 1 3.0657 -10.4164 -3.8979 40 1 -0.9668 -3.9952 -2.1667 41 1 -1.1135 -3.8818 -0.3938 42 1 -0.3225 -1.7375 -1.2606 43 1 0.9975 -2.5459 -2.1401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883781961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:40 Heat of formation + Delta-G solvation = -37.350672 kcal Electronic energy + Delta-G solvation = -21813.495958 eV Core-core repulsion = 18664.665153 eV Total energy + Delta-G solvation = -3148.830805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42472 -39.75267 -38.46137 -35.73086 -35.26941 -32.91719 -31.92130 -30.50233 -29.64760 -27.94154 -25.42845 -24.51302 -23.68100 -21.90717 -21.47968 -20.27125 -19.60614 -19.08958 -18.31164 -17.36498 -16.87970 -16.56828 -16.44140 -16.14850 -15.26637 -15.11386 -14.87498 -14.77992 -14.44696 -14.18452 -13.78208 -13.43062 -13.03736 -12.93944 -12.80700 -12.78150 -12.72832 -12.46869 -12.16129 -12.13383 -12.07504 -11.91014 -11.84767 -11.42607 -11.30723 -10.92998 -10.78695 -10.40528 -10.19024 -9.78453 -9.37323 -8.06877 -6.20840 1.39548 1.41452 1.43159 1.52097 1.72560 2.14910 2.44302 2.96803 3.19697 3.69336 3.74006 3.93062 4.09362 4.24544 4.32549 4.34258 4.38828 4.50024 4.59241 4.59716 4.64385 4.73191 4.77732 4.90773 4.97559 4.99329 5.00750 5.06685 5.19956 5.22151 5.24869 5.39533 5.47270 5.50833 5.54068 5.65738 5.68461 5.98792 6.01216 6.07820 6.12892 6.39193 6.90775 7.01644 7.47261 7.57315 8.96577 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039081 B = 0.003268 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.296994 B = 8565.757960 C = 8844.951546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.046 3.954 10 C -0.116 4.116 11 C 0.118 3.882 12 N -0.622 5.622 13 C 0.700 3.300 14 O -0.642 6.642 15 N -0.732 5.732 16 C 0.150 3.850 17 C -0.072 4.072 18 H 0.095 0.905 19 C -0.177 4.177 20 C -0.164 4.164 21 C -0.101 4.101 22 C -0.118 4.118 23 C 0.139 3.861 24 C -0.112 4.112 25 H 0.260 0.740 26 H 0.005 0.995 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.407 0.593 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -22.147 -0.774 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.155 4.155 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.401 3.599 14 O -0.524 6.524 15 N -0.391 5.391 16 C 0.026 3.974 17 C -0.091 4.091 18 H 0.113 0.887 19 C -0.195 4.195 20 C -0.182 4.182 21 C -0.138 4.138 22 C -0.156 4.156 23 C 0.015 3.985 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.023 0.977 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.246 0.754 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.371 -22.026 -1.453 22.718 hybrid contribution 0.317 1.523 0.304 1.585 sum 5.688 -20.503 -1.149 21.309 Atomic orbital electron populations 1.69977 1.07064 1.27074 1.51425 1.25718 0.95658 1.02281 0.94990 0.85674 0.78917 0.79800 0.77953 1.20707 1.20997 1.19101 1.21592 0.93062 0.92169 1.50197 0.92908 1.18596 0.93108 0.92560 0.92990 1.21876 0.98150 0.94283 1.01163 1.21811 0.91199 0.98467 0.88944 1.47399 1.38291 1.20898 1.29224 1.16068 0.81022 0.80671 0.82134 1.90831 1.47762 1.81982 1.31866 1.45168 1.41950 1.16082 1.35897 1.21251 0.99358 0.83925 0.92872 1.21275 0.98567 0.95092 0.94136 0.88668 1.23320 1.01619 0.96489 0.98062 1.23521 0.99244 0.96303 0.99153 1.21405 1.01807 0.98292 0.92266 1.22511 1.03072 0.92907 0.97105 1.21324 0.90990 0.85211 1.00931 1.21712 0.99384 0.95654 0.98342 0.93065 0.97668 0.90682 0.93727 0.90566 0.88180 0.75378 0.92878 0.92667 0.85881 0.84803 0.90261 0.89620 0.90923 0.89416 0.91640 0.92061 0.90888 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.41 11.31 21.45 0.24 -52.17 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.53 -28.69 8.56 25.60 0.22 -28.48 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.05 2.22 2.07 -11.51 -0.02 2.19 16 10 C -0.12 -4.35 5.30 30.67 0.16 -4.19 16 11 C 0.12 3.53 6.39 86.36 0.55 4.08 16 12 N -0.62 -22.52 2.98 -837.73 -2.49 -25.01 16 13 C 0.70 25.27 8.30 179.05 1.49 26.75 16 14 O -0.64 -28.49 15.77 -3.98 -0.06 -28.55 16 15 N -0.73 -18.92 5.34 -478.53 -2.55 -21.47 16 16 C 0.15 3.37 5.00 86.38 0.43 3.81 16 17 C -0.07 -1.12 2.94 -10.85 -0.03 -1.15 16 18 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 19 C -0.18 -2.69 9.88 26.26 0.26 -2.43 16 20 C -0.16 -2.16 10.77 26.26 0.28 -1.87 16 21 C -0.10 -1.11 6.81 30.53 0.21 -0.91 16 22 C -0.12 -1.50 6.71 31.71 0.21 -1.29 16 23 C 0.14 5.82 6.41 86.22 0.55 6.37 16 24 C -0.11 -5.43 5.14 30.53 0.16 -5.28 16 25 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.10 2.17 5.64 -2.39 -0.01 2.16 16 31 H 0.41 8.25 5.89 -92.71 -0.55 7.70 16 32 H 0.05 1.32 8.13 -2.39 -0.02 1.31 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.12 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.99 7.91 -2.39 -0.02 0.97 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 2.87 6.99 -2.39 -0.02 2.86 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.07 3.99 6.03 -2.39 -0.01 3.97 16 43 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -67.09 338.15 2.51 -64.58 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.44 Total: 18.49 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.92 Total: -1.29 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -4.81 Total: -98.65 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.06 Total: -28.55 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -67.09 2.51 -64.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883781961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.230 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds