Wall clock time and date at job start Tue Mar 31 2020 00:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99807 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00292 * 3 2 1 5 5 H 1.48498 * 109.46985 * 30.00203 * 3 2 1 6 6 H 1.48499 * 109.46957 * 150.00119 * 3 2 1 7 7 C 1.37876 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99938 * 173.55257 * 7 2 1 9 9 C 1.50697 * 120.00156 * 353.55052 * 7 2 1 10 10 C 1.53003 * 115.55238 * 85.40623 * 9 7 2 11 11 N 1.46501 * 109.47156 * 65.13833 * 10 9 7 12 12 C 1.34766 * 120.00189 * 178.28750 * 11 10 9 13 13 O 1.21593 * 120.00067 * 0.02562 * 12 11 10 14 14 N 1.34785 * 120.00303 * 180.02562 * 12 11 10 15 15 C 1.46492 * 120.00276 * 180.02562 * 14 12 11 16 16 C 1.51849 * 108.65120 * 80.91000 * 15 14 12 17 17 C 1.53068 * 110.74964 * 187.60905 * 16 15 14 18 18 C 1.51378 * 108.61059 * 274.25975 * 17 16 15 19 19 C 1.29525 * 120.35863 * 71.87980 * 18 17 16 20 20 C 1.51374 * 120.36040 * 0.02592 * 19 18 17 21 21 C 1.51848 * 108.65382 * 205.00152 * 15 14 12 22 22 C 1.52998 * 117.50290 * 231.07963 * 9 7 2 23 23 C 1.52999 * 117.49748 * 299.74076 * 9 7 2 24 24 H 0.97003 * 120.00158 * 5.07283 * 1 2 3 25 25 H 1.09005 * 109.46880 * 305.14623 * 10 9 7 26 26 H 1.08991 * 109.47365 * 185.14426 * 10 9 7 27 27 H 0.97001 * 119.99698 * 358.29610 * 11 10 9 28 28 H 0.97001 * 119.99584 * 0.02562 * 14 12 11 29 29 H 1.08998 * 108.60675 * 323.02150 * 15 14 12 30 30 H 1.09004 * 109.22004 * 307.92621 * 16 15 14 31 31 H 1.08996 * 109.22147 * 67.27260 * 16 15 14 32 32 H 1.08997 * 109.62864 * 154.51565 * 17 16 15 33 33 H 1.08994 * 109.60078 * 33.98542 * 17 16 15 34 34 H 1.07995 * 119.82152 * 252.15815 * 18 17 16 35 35 H 1.08001 * 119.81949 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.61467 * 47.81412 * 20 19 18 37 37 H 1.09008 * 109.61062 * 168.16162 * 20 19 18 38 38 H 1.09001 * 109.21668 * 52.07230 * 21 15 14 39 39 H 1.09004 * 109.18498 * 292.70699 * 21 15 14 40 40 H 1.08993 * 117.50115 * 215.00380 * 22 9 7 41 41 H 1.09002 * 117.49469 * 0.02562 * 22 9 7 42 42 H 1.08998 * 117.50342 * 359.97221 * 23 9 7 43 43 H 1.09003 * 117.50085 * 144.97603 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1056 9 6 1.2583 -2.4951 0.1455 10 6 0.7022 -3.0861 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5600 -4.0345 -3.2256 13 8 0.4129 -4.2450 -3.5695 14 7 2.5803 -4.3775 -4.0368 15 6 2.3072 -5.0033 -5.3328 16 6 1.9411 -3.9173 -6.3290 17 6 1.4640 -4.5299 -7.6481 18 6 2.6730 -4.8157 -8.5132 19 6 3.4775 -5.7857 -8.2139 20 6 3.2187 -6.6461 -6.9956 21 6 3.5193 -5.8213 -5.7422 22 6 1.7471 -3.4738 1.2150 23 6 0.4419 -2.7016 1.4228 24 1 -0.4850 0.8368 -0.0743 25 1 0.0755 -2.3456 -1.6488 26 1 0.1076 -3.9703 -0.9224 27 1 2.7263 -3.2902 -1.7593 28 1 3.4955 -4.2099 -3.7623 29 1 1.4552 -5.6740 -5.2225 30 1 1.1452 -3.3007 -5.9112 31 1 2.8152 -3.2941 -6.5179 32 1 0.8052 -3.8287 -8.1603 33 1 0.9296 -5.4585 -7.4479 34 1 2.8682 -4.2048 -9.3820 35 1 4.3371 -5.9822 -8.8373 36 1 2.1752 -6.9608 -6.9849 37 1 3.8651 -7.5234 -7.0232 38 1 3.7909 -6.4925 -4.9275 39 1 4.3528 -5.1491 -5.9463 40 1 1.6727 -4.5386 0.9946 41 1 2.6083 -3.1764 1.8134 42 1 0.4449 -1.8968 2.1578 43 1 -0.4916 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884313634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:49 Heat of formation + Delta-G solvation = -5.270410 kcal Electronic energy + Delta-G solvation = -21804.152400 eV Core-core repulsion = 18656.712700 eV Total energy + Delta-G solvation = -3147.439700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85476 -38.28839 -36.68095 -34.37772 -33.20485 -31.95836 -31.93121 -30.52220 -26.33698 -25.32889 -24.27515 -24.08901 -21.20707 -20.60047 -20.18192 -19.35291 -18.15629 -17.61929 -16.74617 -16.05180 -15.67791 -14.86901 -14.64734 -14.52076 -14.04327 -13.94067 -13.66957 -13.21290 -13.08021 -12.97308 -12.59334 -12.28480 -11.90636 -11.71998 -11.56406 -11.34069 -10.99541 -10.94326 -10.84746 -10.67332 -10.51984 -10.40599 -10.25407 -9.70821 -9.51181 -9.17097 -8.94681 -8.76879 -8.48011 -8.23237 -7.93176 -6.06325 -4.14842 2.16176 3.25520 3.26297 3.34047 3.35667 3.85670 4.35993 4.50071 4.73591 4.81022 4.92475 5.04925 5.08150 5.21739 5.24141 5.35206 5.39166 5.43303 5.61997 5.68398 5.74863 5.84992 6.03718 6.05173 6.08021 6.25056 6.34534 6.36606 6.49679 6.54945 6.62628 6.71357 6.77712 6.88501 6.90265 7.10757 7.37612 7.44843 7.49894 7.65268 7.82606 8.35900 8.72230 8.85799 9.26867 9.51721 11.01477 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.003880 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.972708 B = 7215.320920 C = 7789.589559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.721 5.721 12 C 0.698 3.302 13 O -0.604 6.604 14 N -0.754 5.754 15 C 0.169 3.831 16 C -0.124 4.124 17 C -0.090 4.090 18 C -0.152 4.152 19 C -0.164 4.164 20 C -0.087 4.087 21 C -0.120 4.120 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.261 0.739 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.395 0.605 28 H 0.392 0.608 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 -10.517 -12.501 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.397 3.603 13 O -0.483 6.483 14 N -0.410 5.410 15 C 0.063 3.937 16 C -0.163 4.163 17 C -0.127 4.127 18 C -0.170 4.170 19 C -0.183 4.183 20 C -0.125 4.125 21 C -0.158 4.158 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.228 0.772 28 H 0.225 0.775 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.297 -10.559 -12.687 17.667 hybrid contribution 1.321 1.272 0.181 1.843 sum 7.619 -9.287 -12.506 17.341 Atomic orbital electron populations 1.69977 1.05876 1.26889 1.48241 1.24980 0.94788 0.98900 0.94329 0.86643 0.79928 0.83631 0.78112 1.20716 1.21163 1.19848 1.20322 0.92769 0.88641 1.52007 0.92291 1.19039 0.98551 0.93861 0.85780 1.20831 0.86665 0.96596 0.90030 1.45154 1.11233 1.63690 1.17260 1.16069 0.84687 0.78798 0.80698 1.90862 1.19855 1.61832 1.75775 1.45320 1.08352 1.67982 1.19318 1.20378 0.97878 0.93668 0.81761 1.21717 1.01967 0.98468 0.94140 1.20775 0.95751 1.01388 0.94831 1.22630 0.96997 0.98027 0.99339 1.22516 0.99657 0.97829 0.98251 1.20717 1.02292 0.97204 0.92253 1.21554 0.97906 0.98819 0.97542 1.23015 0.98628 0.95681 1.07482 1.22489 0.92286 1.01071 1.02749 0.92863 0.91278 0.94802 0.77168 0.77530 0.90284 0.90604 0.91983 0.91343 0.90864 0.87689 0.87685 0.90756 0.91209 0.91043 0.91352 0.91665 0.90432 0.89844 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.39 12.91 55.43 0.72 -23.67 16 2 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.50 -12.88 8.63 -34.44 -0.30 -13.17 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.23 5.50 -4.04 -0.02 4.20 16 11 N -0.72 -14.28 5.48 -65.22 -0.36 -14.64 16 12 C 0.70 13.48 8.32 -86.92 -0.72 12.75 16 13 O -0.60 -13.95 15.66 5.28 0.08 -13.87 16 14 N -0.75 -10.86 5.04 -59.84 -0.30 -11.16 16 15 C 0.17 2.14 1.97 -69.10 -0.14 2.00 16 16 C -0.12 -1.59 5.15 -27.28 -0.14 -1.73 16 17 C -0.09 -0.96 5.62 -27.52 -0.15 -1.11 16 18 C -0.15 -1.41 9.34 -35.28 -0.33 -1.74 16 19 C -0.16 -1.42 9.34 -35.28 -0.33 -1.75 16 20 C -0.09 -0.74 5.61 -27.54 -0.15 -0.89 16 21 C -0.12 -1.14 5.06 -27.30 -0.14 -1.28 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 23 C -0.15 -3.39 9.42 -26.69 -0.25 -3.65 16 24 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 25 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 26 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.40 7.09 8.38 -40.82 -0.34 6.75 16 28 H 0.39 4.63 8.58 -40.82 -0.35 4.28 16 29 H 0.08 1.16 7.33 -51.93 -0.38 0.78 16 30 H 0.08 1.21 7.62 -51.93 -0.40 0.82 16 31 H 0.06 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.78 6.68 -51.93 -0.35 0.44 16 34 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.07 0.66 6.68 -51.93 -0.35 0.32 16 37 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 43 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -29.87 347.12 -10.08 -39.95 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.17 Total: 11.27 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.25 Total: -8.69 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.06 Total: -49.47 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.87 -10.08 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.676 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds