Wall clock time and date at job start Tue Mar 31 2020 00:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99807 * 2 1 4 4 H 1.48497 * 109.47072 * 270.00292 * 3 2 1 5 5 H 1.48498 * 109.46985 * 30.00203 * 3 2 1 6 6 H 1.48499 * 109.46957 * 150.00119 * 3 2 1 7 7 C 1.37876 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99938 * 173.55257 * 7 2 1 9 9 C 1.50697 * 120.00156 * 353.55052 * 7 2 1 10 10 C 1.53003 * 115.55238 * 85.40623 * 9 7 2 11 11 N 1.46501 * 109.47156 * 65.13833 * 10 9 7 12 12 C 1.34766 * 120.00189 * 178.28750 * 11 10 9 13 13 O 1.21593 * 120.00067 * 0.02562 * 12 11 10 14 14 N 1.34785 * 120.00303 * 180.02562 * 12 11 10 15 15 C 1.46492 * 120.00276 * 180.02562 * 14 12 11 16 16 C 1.51849 * 108.65120 * 80.91000 * 15 14 12 17 17 C 1.53068 * 110.74964 * 187.60905 * 16 15 14 18 18 C 1.51378 * 108.61059 * 274.25975 * 17 16 15 19 19 C 1.29525 * 120.35863 * 71.87980 * 18 17 16 20 20 C 1.51374 * 120.36040 * 0.02592 * 19 18 17 21 21 C 1.51848 * 108.65382 * 205.00152 * 15 14 12 22 22 C 1.52998 * 117.50290 * 231.07963 * 9 7 2 23 23 C 1.52999 * 117.49748 * 299.74076 * 9 7 2 24 24 H 0.97003 * 120.00158 * 5.07283 * 1 2 3 25 25 H 1.09005 * 109.46880 * 305.14623 * 10 9 7 26 26 H 1.08991 * 109.47365 * 185.14426 * 10 9 7 27 27 H 0.97001 * 119.99698 * 358.29610 * 11 10 9 28 28 H 0.97001 * 119.99584 * 0.02562 * 14 12 11 29 29 H 1.08998 * 108.60675 * 323.02150 * 15 14 12 30 30 H 1.09004 * 109.22004 * 307.92621 * 16 15 14 31 31 H 1.08996 * 109.22147 * 67.27260 * 16 15 14 32 32 H 1.08997 * 109.62864 * 154.51565 * 17 16 15 33 33 H 1.08994 * 109.60078 * 33.98542 * 17 16 15 34 34 H 1.07995 * 119.82152 * 252.15815 * 18 17 16 35 35 H 1.08001 * 119.81949 * 179.97438 * 19 18 17 36 36 H 1.08999 * 109.61467 * 47.81412 * 20 19 18 37 37 H 1.09008 * 109.61062 * 168.16162 * 20 19 18 38 38 H 1.09001 * 109.21668 * 52.07230 * 21 15 14 39 39 H 1.09004 * 109.18498 * 292.70699 * 21 15 14 40 40 H 1.08993 * 117.50115 * 215.00380 * 22 9 7 41 41 H 1.09002 * 117.49469 * 0.02562 * 22 9 7 42 42 H 1.08998 * 117.50342 * 359.97221 * 23 9 7 43 43 H 1.09003 * 117.50085 * 144.97603 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1056 9 6 1.2583 -2.4951 0.1455 10 6 0.7022 -3.0861 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5600 -4.0345 -3.2256 13 8 0.4129 -4.2450 -3.5695 14 7 2.5803 -4.3775 -4.0368 15 6 2.3072 -5.0033 -5.3328 16 6 1.9411 -3.9173 -6.3290 17 6 1.4640 -4.5299 -7.6481 18 6 2.6730 -4.8157 -8.5132 19 6 3.4775 -5.7857 -8.2139 20 6 3.2187 -6.6461 -6.9956 21 6 3.5193 -5.8213 -5.7422 22 6 1.7471 -3.4738 1.2150 23 6 0.4419 -2.7016 1.4228 24 1 -0.4850 0.8368 -0.0743 25 1 0.0755 -2.3456 -1.6488 26 1 0.1076 -3.9703 -0.9224 27 1 2.7263 -3.2902 -1.7593 28 1 3.4955 -4.2099 -3.7623 29 1 1.4552 -5.6740 -5.2225 30 1 1.1452 -3.3007 -5.9112 31 1 2.8152 -3.2941 -6.5179 32 1 0.8052 -3.8287 -8.1603 33 1 0.9296 -5.4585 -7.4479 34 1 2.8682 -4.2048 -9.3820 35 1 4.3371 -5.9822 -8.8373 36 1 2.1752 -6.9608 -6.9849 37 1 3.8651 -7.5234 -7.0232 38 1 3.7909 -6.4925 -4.9275 39 1 4.3528 -5.1491 -5.9463 40 1 1.6727 -4.5386 0.9946 41 1 2.6083 -3.1764 1.8134 42 1 0.4449 -1.8968 2.1578 43 1 -0.4916 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884313634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:48 Heat of formation + Delta-G solvation = -23.276398 kcal Electronic energy + Delta-G solvation = -21804.933198 eV Core-core repulsion = 18656.712700 eV Total energy + Delta-G solvation = -3148.220498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21591 -39.45972 -38.40885 -35.56275 -34.90773 -33.95631 -32.75746 -31.62309 -28.06887 -27.10812 -25.41320 -24.95523 -22.96796 -21.75860 -21.58025 -21.20936 -19.24504 -18.79069 -18.15627 -17.49528 -16.85929 -16.65858 -16.27886 -15.90528 -15.51950 -15.20496 -14.99981 -14.54153 -14.44178 -13.96539 -13.88359 -13.62966 -13.45192 -13.19464 -12.91263 -12.84158 -12.65305 -12.34033 -12.10963 -12.03208 -11.85905 -11.57343 -11.50424 -11.26831 -11.18916 -10.83939 -10.45362 -10.25342 -10.02519 -9.92196 -9.56114 -8.08659 -6.21777 1.42178 1.44837 1.46530 1.53220 1.85617 2.28903 2.43078 3.19505 3.34264 3.62851 3.66290 3.92275 4.09843 4.18869 4.26039 4.27827 4.41979 4.50082 4.57586 4.59665 4.66807 4.69073 4.75568 4.86405 4.93037 5.00080 5.02873 5.09551 5.18878 5.24616 5.28288 5.28947 5.39291 5.60123 5.62255 5.66554 5.74360 5.80177 5.83662 6.08518 6.20396 6.38112 6.85168 7.28235 7.47547 7.72997 8.98915 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022576 B = 0.003880 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.972708 B = 7215.320920 C = 7789.589559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.006 3.994 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.695 3.305 13 O -0.645 6.645 14 N -0.734 5.734 15 C 0.168 3.832 16 C -0.120 4.120 17 C -0.087 4.087 18 C -0.164 4.164 19 C -0.155 4.155 20 C -0.088 4.088 21 C -0.111 4.111 22 C -0.175 4.175 23 C -0.160 4.160 24 H 0.258 0.742 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.406 0.594 28 H 0.408 0.592 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.430 -11.652 -13.271 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.005 3.995 10 C 0.075 3.925 11 N -0.369 5.369 12 C 0.395 3.605 13 O -0.528 6.528 14 N -0.390 5.390 15 C 0.063 3.937 16 C -0.158 4.158 17 C -0.125 4.125 18 C -0.182 4.182 19 C -0.173 4.173 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.212 4.212 23 C -0.198 4.198 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.241 0.759 28 H 0.244 0.756 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.235 -11.710 -13.471 20.096 hybrid contribution 0.423 1.573 0.395 1.676 sum 9.658 -10.137 -13.076 19.158 Atomic orbital electron populations 1.70110 1.07317 1.27285 1.49878 1.25710 0.95432 1.02092 0.94408 0.85685 0.79007 0.79824 0.77888 1.20742 1.21581 1.18644 1.20651 0.93119 0.89544 1.50794 0.91777 1.19048 0.99707 0.94483 0.86223 1.20373 0.87061 0.95043 0.90012 1.44923 1.10916 1.63832 1.17275 1.16248 0.84968 0.78529 0.80796 1.90834 1.22012 1.63407 1.76567 1.45207 1.08082 1.66638 1.19085 1.20567 0.99008 0.93417 0.80660 1.21640 1.00791 0.98223 0.95190 1.20708 0.96750 1.01018 0.94004 1.22617 0.96585 0.99156 0.99828 1.22731 0.99694 0.96858 0.98035 1.20766 1.02441 0.97799 0.91611 1.21500 0.96184 0.98716 0.98446 1.22999 0.97328 0.96230 1.04632 1.22434 0.93790 1.01431 1.02131 0.93276 0.95832 0.95089 0.75867 0.75575 0.92527 0.94676 0.91260 0.91404 0.91239 0.86506 0.85676 0.91536 0.88976 0.89966 0.90148 0.89367 0.89464 0.91742 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.94 12.91 21.45 0.28 -51.67 16 2 C 0.02 1.29 5.39 84.65 0.46 1.75 16 3 Si 0.95 42.36 29.55 68.60 2.03 44.39 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.50 -25.74 8.63 25.60 0.22 -25.52 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 10 C 0.20 9.45 5.50 86.38 0.48 9.93 16 11 N -0.72 -28.28 5.48 -478.53 -2.62 -30.90 16 12 C 0.69 27.07 8.32 179.06 1.49 28.56 16 13 O -0.65 -30.89 15.66 -4.01 -0.06 -30.95 16 14 N -0.73 -20.51 5.04 -461.48 -2.32 -22.83 16 15 C 0.17 4.15 1.97 44.24 0.09 4.24 16 16 C -0.12 -3.08 5.15 30.24 0.16 -2.93 16 17 C -0.09 -1.83 5.62 30.09 0.17 -1.66 16 18 C -0.16 -2.72 9.34 27.37 0.26 -2.47 16 19 C -0.16 -2.20 9.34 27.37 0.26 -1.94 16 20 C -0.09 -1.25 5.61 30.07 0.17 -1.08 16 21 C -0.11 -1.80 5.06 30.22 0.15 -1.65 16 22 C -0.17 -6.94 9.96 30.62 0.30 -6.64 16 23 C -0.16 -7.32 9.42 30.62 0.29 -7.04 16 24 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 25 H 0.02 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.03 1.46 8.09 -2.39 -0.02 1.44 16 27 H 0.41 14.07 8.38 -92.71 -0.78 13.30 16 28 H 0.41 8.79 8.58 -92.71 -0.80 7.99 16 29 H 0.06 1.68 7.33 -2.39 -0.02 1.66 16 30 H 0.03 1.18 7.62 -2.39 -0.02 1.16 16 31 H 0.07 1.65 7.86 -2.39 -0.02 1.64 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.50 6.68 -2.39 -0.02 1.48 16 34 H 0.12 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.07 1.08 6.68 -2.39 -0.02 1.06 16 37 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.17 7.85 -2.38 -0.02 1.15 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -65.92 347.12 1.13 -64.79 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.57 Total: 33.40 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 4.41 Total: -6.23 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.67 Total: -105.40 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.06 Total: -30.95 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -65.92 1.13 -64.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.518 kcal (2) G-P(sol) polarization free energy of solvation -65.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds