Wall clock time and date at job start Tue Mar 31 2020 00:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00019 * 2 1 4 4 H 1.48492 * 109.46736 * 269.99717 * 3 2 1 5 5 H 1.48497 * 109.46922 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46912 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 184.86575 * 7 2 1 9 9 C 1.50699 * 119.99925 * 4.86454 * 7 2 1 10 10 C 1.53001 * 115.55053 * 84.82226 * 9 7 2 11 11 N 1.46498 * 109.47215 * 65.18064 * 10 9 7 12 12 C 1.34778 * 120.00012 * 185.17090 * 11 10 9 13 13 O 1.21581 * 120.00001 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99769 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99370 * 180.27292 * 14 12 11 16 16 H 1.08996 * 113.58162 * 306.85896 * 15 14 12 17 17 C 1.56738 * 114.61600 * 172.36478 * 15 14 12 18 18 C 1.49803 * 81.20848 * 292.33582 * 17 15 14 19 19 H 1.09000 * 113.84136 * 69.11209 * 18 17 15 20 20 C 1.51632 * 129.71597 * 225.72031 * 18 17 15 21 21 C 1.56233 * 101.48291 * 133.02188 * 20 18 17 22 22 C 1.55770 * 104.82271 * 333.67964 * 21 20 18 23 23 C 1.49500 * 114.61650 * 81.28804 * 15 14 12 24 24 H 1.09006 * 113.10319 * 179.56646 * 23 15 14 25 25 C 1.53005 * 117.49970 * 230.49050 * 9 7 2 26 26 C 1.53002 * 117.50053 * 299.15235 * 9 7 2 27 27 H 0.96996 * 119.99830 * 5.00713 * 1 2 3 28 28 H 1.09000 * 109.46987 * 305.17901 * 10 9 7 29 29 H 1.09006 * 109.47230 * 185.18116 * 10 9 7 30 30 H 0.97000 * 120.00015 * 5.16926 * 11 10 9 31 31 H 0.96997 * 120.00100 * 359.97438 * 14 12 11 32 32 H 1.09003 * 114.57032 * 45.41914 * 17 15 14 33 33 H 1.09002 * 114.57135 * 179.25158 * 17 15 14 34 34 H 1.09000 * 111.02236 * 251.07336 * 20 18 17 35 35 H 1.09007 * 111.02068 * 14.97290 * 20 18 17 36 36 H 1.09002 * 110.36773 * 92.51560 * 21 20 18 37 37 H 1.09003 * 110.36973 * 214.73784 * 21 20 18 38 38 H 1.09001 * 110.49008 * 232.50220 * 22 21 20 39 39 H 1.09003 * 110.49221 * 109.83868 * 22 21 20 40 40 H 1.08998 * 117.49791 * 215.00378 * 25 9 7 41 41 H 1.08999 * 117.49691 * 0.02789 * 25 9 7 42 42 H 1.08999 * 117.49977 * 359.97341 * 26 9 7 43 43 H 1.08996 * 117.50127 * 144.97603 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 0.0799 9 6 1.2551 -2.4968 -0.1096 10 6 0.9202 -2.9472 -1.5329 11 7 2.1598 -3.2377 -2.2576 12 6 2.1167 -3.5528 -3.5673 13 8 1.0490 -3.5966 -4.1472 14 7 3.2572 -3.8195 -4.2341 15 6 3.2108 -4.1563 -5.6591 16 1 2.5279 -4.9732 -5.8921 17 6 4.6131 -4.2582 -6.3519 18 6 4.6008 -2.7860 -6.0755 19 1 4.6739 -2.5358 -5.0171 20 6 4.9721 -1.6272 -6.9802 21 6 3.7662 -0.6594 -6.7568 22 6 2.5834 -1.5852 -6.3441 23 6 3.1083 -2.9785 -6.5743 24 1 3.0831 -3.2566 -7.6280 25 6 1.5733 -3.5840 0.9190 26 6 0.2452 -2.8262 0.9916 27 1 -0.4850 0.8368 -0.0733 28 1 0.3764 -2.1544 -2.0464 29 1 0.3031 -3.8450 -1.4942 30 1 3.0116 -3.2031 -1.7949 31 1 4.1091 -3.7843 -3.7716 32 1 5.3578 -4.8193 -5.7873 33 1 4.5783 -4.5214 -7.4091 34 1 5.9073 -1.1666 -6.6618 35 1 5.0297 -1.9465 -8.0209 36 1 3.9904 0.0483 -5.9586 37 1 3.5303 -0.1280 -7.6789 38 1 1.7135 -1.3963 -6.9732 39 1 2.3341 -1.4401 -5.2929 40 1 1.5440 -4.6200 0.5816 41 1 2.3243 -3.3567 1.6755 42 1 0.1232 -2.1008 1.7960 43 1 -0.6579 -3.3634 0.7021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894567414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:29 Heat of formation + Delta-G solvation = 66.498219 kcal Electronic energy + Delta-G solvation = -22452.066257 eV Core-core repulsion = 19307.738678 eV Total energy + Delta-G solvation = -3144.327579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68506 -38.82664 -36.67292 -34.41283 -33.23259 -31.97865 -31.70060 -28.57199 -26.26592 -25.14208 -24.22252 -23.11297 -21.35228 -20.94627 -19.78657 -19.47102 -19.06572 -17.68239 -16.23442 -15.56375 -15.38260 -14.90022 -14.69173 -14.33081 -14.27200 -14.07836 -13.85132 -13.49270 -13.09472 -12.64264 -12.26269 -12.11402 -11.84815 -11.51555 -11.12164 -11.00918 -10.98427 -10.89576 -10.83780 -10.62676 -10.53269 -10.34464 -10.23213 -9.67676 -9.43216 -9.08686 -9.06574 -8.71737 -8.44244 -8.22651 -7.96885 -6.06961 -4.15113 3.12163 3.26676 3.34380 3.34929 3.76351 3.82117 4.31962 4.36662 4.70314 4.80613 4.86818 4.98179 5.21820 5.22434 5.37949 5.38817 5.47228 5.56788 5.69594 5.73024 5.82685 5.89495 6.03717 6.04862 6.06720 6.18931 6.28868 6.35532 6.47039 6.49524 6.57170 6.58475 6.71150 6.84146 6.86916 7.13017 7.34245 7.43941 7.47114 7.62441 7.82098 8.35331 8.67133 8.85747 9.23845 9.51683 11.01329 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.005416 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.514209 B = 5168.320315 C = 6168.710788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.184 3.816 11 N -0.721 5.721 12 C 0.701 3.299 13 O -0.595 6.595 14 N -0.734 5.734 15 C 0.171 3.829 16 H 0.086 0.914 17 C -0.114 4.114 18 C -0.166 4.166 19 H 0.105 0.895 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.150 4.150 24 H 0.095 0.905 25 C -0.212 4.212 26 C -0.141 4.141 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.394 0.606 31 H 0.394 0.606 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.831 -6.347 -11.310 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.023 3.977 10 C 0.060 3.940 11 N -0.373 5.373 12 C 0.401 3.599 13 O -0.474 6.474 14 N -0.392 5.392 15 C 0.064 3.936 16 H 0.104 0.896 17 C -0.151 4.151 18 C -0.184 4.184 19 H 0.123 0.877 20 C -0.137 4.137 21 C -0.161 4.161 22 C -0.137 4.137 23 C -0.170 4.170 24 H 0.113 0.887 25 C -0.249 4.249 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.227 0.773 31 H 0.229 0.771 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.622 -6.226 -11.741 15.842 hybrid contribution 1.139 1.179 0.397 1.687 sum 9.761 -5.048 -11.344 15.793 Atomic orbital electron populations 1.70002 1.05811 1.26896 1.48318 1.24962 0.94793 0.98867 0.94392 0.86675 0.79911 0.83802 0.78132 1.20668 1.21231 1.19905 1.20324 0.92437 0.88700 1.51859 0.92360 1.19072 0.99377 0.93267 0.86013 1.20834 0.83210 0.97619 0.92335 1.45125 1.11618 1.72979 1.07620 1.15962 0.83734 0.78316 0.81911 1.90883 1.28387 1.59969 1.68137 1.44824 1.08243 1.76932 1.09159 1.20902 0.96664 0.96167 0.79839 0.89607 1.23013 0.95939 0.95155 1.01016 1.23604 0.99712 0.94148 1.00962 0.87720 1.21818 0.97613 0.95596 0.98717 1.23007 0.94359 0.97796 1.00911 1.21374 0.96819 0.93183 1.02334 1.23532 0.97982 0.96297 0.99181 0.88714 1.23019 1.00747 0.95603 1.05552 1.22468 0.90774 1.01325 1.03397 0.92911 0.91381 0.94888 0.77268 0.77061 0.91304 0.88208 0.92273 0.91782 0.91717 0.92040 0.92419 0.91146 0.91705 0.90459 0.89508 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.43 12.66 55.43 0.70 -23.73 16 2 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.77 8.72 -34.44 -0.30 -13.07 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.55 1.44 -155.66 -0.22 0.33 16 10 C 0.18 4.19 5.51 -4.04 -0.02 4.17 16 11 N -0.72 -13.95 5.46 -65.22 -0.36 -14.31 16 12 C 0.70 13.28 7.85 -86.91 -0.68 12.60 16 13 O -0.60 -13.65 16.34 5.29 0.09 -13.56 16 14 N -0.73 -10.34 4.27 -71.79 -0.31 -10.64 16 15 C 0.17 2.15 4.37 -80.70 -0.35 1.80 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 17 C -0.11 -1.03 7.93 -40.85 -0.32 -1.35 16 18 C -0.17 -1.80 4.12 -102.89 -0.42 -2.22 16 19 H 0.10 1.27 5.97 -51.93 -0.31 0.96 16 20 C -0.10 -1.03 6.65 -25.69 -0.17 -1.20 16 21 C -0.12 -1.49 6.99 -23.52 -0.16 -1.66 16 22 C -0.10 -1.45 6.63 -26.42 -0.18 -1.63 16 23 C -0.15 -1.89 4.01 -105.01 -0.42 -2.31 16 24 H 0.09 1.04 7.42 -51.93 -0.39 0.65 16 25 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 26 C -0.14 -3.25 9.15 -26.69 -0.24 -3.50 16 27 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 28 H 0.07 1.80 8.13 -51.93 -0.42 1.37 16 29 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.39 6.86 8.47 -40.82 -0.35 6.52 16 31 H 0.39 4.54 7.76 -40.82 -0.32 4.23 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.75 7.54 -51.93 -0.39 0.36 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.28 7.41 -51.93 -0.38 0.89 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 42 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -29.85 344.86 -10.74 -40.59 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.17 Total: 11.57 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.87 Total: -10.84 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.04 Total: -48.68 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.85 -10.74 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894567414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.090 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds