Wall clock time and date at job start Tue Mar 31 2020 00:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00019 * 2 1 4 4 H 1.48492 * 109.46736 * 269.99717 * 3 2 1 5 5 H 1.48497 * 109.46922 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46912 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 184.86575 * 7 2 1 9 9 C 1.50699 * 119.99925 * 4.86454 * 7 2 1 10 10 C 1.53001 * 115.55053 * 84.82226 * 9 7 2 11 11 N 1.46498 * 109.47215 * 65.18064 * 10 9 7 12 12 C 1.34778 * 120.00012 * 185.17090 * 11 10 9 13 13 O 1.21581 * 120.00001 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99769 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99370 * 180.27292 * 14 12 11 16 16 H 1.08996 * 113.58162 * 306.85896 * 15 14 12 17 17 C 1.56738 * 114.61600 * 172.36478 * 15 14 12 18 18 C 1.49803 * 81.20848 * 292.33582 * 17 15 14 19 19 H 1.09000 * 113.84136 * 69.11209 * 18 17 15 20 20 C 1.51632 * 129.71597 * 225.72031 * 18 17 15 21 21 C 1.56233 * 101.48291 * 133.02188 * 20 18 17 22 22 C 1.55770 * 104.82271 * 333.67964 * 21 20 18 23 23 C 1.49500 * 114.61650 * 81.28804 * 15 14 12 24 24 H 1.09006 * 113.10319 * 179.56646 * 23 15 14 25 25 C 1.53005 * 117.49970 * 230.49050 * 9 7 2 26 26 C 1.53002 * 117.50053 * 299.15235 * 9 7 2 27 27 H 0.96996 * 119.99830 * 5.00713 * 1 2 3 28 28 H 1.09000 * 109.46987 * 305.17901 * 10 9 7 29 29 H 1.09006 * 109.47230 * 185.18116 * 10 9 7 30 30 H 0.97000 * 120.00015 * 5.16926 * 11 10 9 31 31 H 0.96997 * 120.00100 * 359.97438 * 14 12 11 32 32 H 1.09003 * 114.57032 * 45.41914 * 17 15 14 33 33 H 1.09002 * 114.57135 * 179.25158 * 17 15 14 34 34 H 1.09000 * 111.02236 * 251.07336 * 20 18 17 35 35 H 1.09007 * 111.02068 * 14.97290 * 20 18 17 36 36 H 1.09002 * 110.36773 * 92.51560 * 21 20 18 37 37 H 1.09003 * 110.36973 * 214.73784 * 21 20 18 38 38 H 1.09001 * 110.49008 * 232.50220 * 22 21 20 39 39 H 1.09003 * 110.49221 * 109.83868 * 22 21 20 40 40 H 1.08998 * 117.49791 * 215.00378 * 25 9 7 41 41 H 1.08999 * 117.49691 * 0.02789 * 25 9 7 42 42 H 1.08999 * 117.49977 * 359.97341 * 26 9 7 43 43 H 1.08996 * 117.50127 * 144.97603 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 0.0799 9 6 1.2551 -2.4968 -0.1096 10 6 0.9202 -2.9472 -1.5329 11 7 2.1598 -3.2377 -2.2576 12 6 2.1167 -3.5528 -3.5673 13 8 1.0490 -3.5966 -4.1472 14 7 3.2572 -3.8195 -4.2341 15 6 3.2108 -4.1563 -5.6591 16 1 2.5279 -4.9732 -5.8921 17 6 4.6131 -4.2582 -6.3519 18 6 4.6008 -2.7860 -6.0755 19 1 4.6739 -2.5358 -5.0171 20 6 4.9721 -1.6272 -6.9802 21 6 3.7662 -0.6594 -6.7568 22 6 2.5834 -1.5852 -6.3441 23 6 3.1083 -2.9785 -6.5743 24 1 3.0831 -3.2566 -7.6280 25 6 1.5733 -3.5840 0.9190 26 6 0.2452 -2.8262 0.9916 27 1 -0.4850 0.8368 -0.0733 28 1 0.3764 -2.1544 -2.0464 29 1 0.3031 -3.8450 -1.4942 30 1 3.0116 -3.2031 -1.7949 31 1 4.1091 -3.7843 -3.7716 32 1 5.3578 -4.8193 -5.7873 33 1 4.5783 -4.5214 -7.4091 34 1 5.9073 -1.1666 -6.6618 35 1 5.0297 -1.9465 -8.0209 36 1 3.9904 0.0483 -5.9586 37 1 3.5303 -0.1280 -7.6789 38 1 1.7135 -1.3963 -6.9732 39 1 2.3341 -1.4401 -5.2929 40 1 1.5440 -4.6200 0.5816 41 1 2.3243 -3.3567 1.6755 42 1 0.1232 -2.1008 1.7960 43 1 -0.6579 -3.3634 0.7021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894567414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:28 Heat of formation + Delta-G solvation = 48.542037 kcal Electronic energy + Delta-G solvation = -22452.844895 eV Core-core repulsion = 19307.738678 eV Total energy + Delta-G solvation = -3145.106217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.68867 -40.34999 -38.46150 -35.55587 -34.91079 -33.96759 -32.92311 -29.55079 -28.08576 -27.03529 -25.15487 -24.10716 -22.99546 -22.37819 -21.28439 -20.78252 -20.34141 -19.20526 -18.04178 -16.96363 -16.76304 -16.55436 -15.85360 -15.81009 -15.62427 -15.36097 -15.14376 -14.96876 -14.48185 -14.29463 -13.78913 -13.40789 -13.12877 -12.99234 -12.91910 -12.83628 -12.38688 -12.13384 -12.01977 -11.95298 -11.78184 -11.51932 -11.45330 -11.37804 -11.19662 -10.99139 -10.41370 -10.25033 -10.04268 -9.90911 -9.53539 -8.11754 -6.23709 1.38900 1.41050 1.48812 1.78588 2.28779 2.40679 2.85517 3.17514 3.30000 3.46780 3.62018 3.86920 3.89442 4.04883 4.26161 4.28533 4.41209 4.56005 4.60179 4.63067 4.66924 4.72679 4.83893 4.88627 4.91805 4.96510 4.99882 5.02510 5.08802 5.18204 5.22180 5.29729 5.32060 5.45083 5.55848 5.58319 5.63608 5.69712 5.75072 5.78567 6.14688 6.36046 6.83505 7.25661 7.45347 7.73428 8.96358 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.005416 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.514209 B = 5168.320315 C = 6168.710788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.000 4.000 10 C 0.202 3.798 11 N -0.717 5.717 12 C 0.699 3.301 13 O -0.640 6.640 14 N -0.713 5.713 15 C 0.146 3.854 16 H 0.075 0.925 17 C -0.079 4.079 18 C -0.154 4.154 19 H 0.087 0.913 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.104 4.104 23 C -0.170 4.170 24 H 0.120 0.880 25 C -0.174 4.174 26 C -0.153 4.153 27 H 0.257 0.743 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.406 0.594 31 H 0.410 0.590 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.023 0.977 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.979 -7.569 -12.468 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.080 0.920 9 C -0.001 4.001 10 C 0.077 3.923 11 N -0.370 5.370 12 C 0.399 3.601 13 O -0.522 6.522 14 N -0.371 5.371 15 C 0.040 3.960 16 H 0.093 0.907 17 C -0.116 4.116 18 C -0.173 4.173 19 H 0.105 0.895 20 C -0.128 4.128 21 C -0.159 4.159 22 C -0.142 4.142 23 C -0.189 4.189 24 H 0.138 0.862 25 C -0.211 4.211 26 C -0.192 4.192 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.241 0.759 31 H 0.247 0.753 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.852 -7.464 -12.897 19.040 hybrid contribution 0.107 1.550 0.741 1.721 sum 11.959 -5.915 -12.155 18.049 Atomic orbital electron populations 1.70126 1.07170 1.27247 1.50008 1.25681 0.95457 1.01981 0.94587 0.85757 0.79194 0.80207 0.77722 1.21118 1.21465 1.18493 1.20647 0.92755 0.89689 1.50470 0.91954 1.19087 1.00382 0.94014 0.86583 1.20357 0.84191 0.95857 0.91869 1.44882 1.11010 1.73154 1.07958 1.16124 0.84390 0.77965 0.81633 1.90847 1.30554 1.61821 1.68937 1.44617 1.07287 1.75233 1.09927 1.21265 0.99917 0.96076 0.78765 0.90689 1.22948 0.92928 0.93462 1.02243 1.23578 0.97735 0.95786 1.00186 0.89481 1.21785 0.96674 0.94532 0.99851 1.22996 0.94359 0.97677 1.00901 1.21376 0.97782 0.95996 0.99052 1.23727 0.99498 0.95129 1.00542 0.86214 1.23002 0.98755 0.95942 1.03431 1.22388 0.92197 1.01873 1.02722 0.93349 0.96140 0.94848 0.75936 0.75256 0.89181 0.85493 0.91292 0.89560 0.93236 0.90678 0.93593 0.95844 0.89116 0.89622 0.91751 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.44 12.66 21.45 0.27 -52.17 16 2 C 0.02 1.26 5.43 84.65 0.46 1.72 16 3 Si 0.94 43.16 29.54 68.60 2.03 45.19 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.50 -25.75 8.72 25.60 0.22 -25.52 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 9 C 0.00 0.01 1.44 -52.93 -0.08 -0.07 16 10 C 0.20 9.49 5.51 86.38 0.48 9.97 16 11 N -0.72 -28.01 5.46 -478.53 -2.61 -30.62 16 12 C 0.70 26.99 7.85 179.05 1.40 28.39 16 13 O -0.64 -30.57 16.34 -3.97 -0.06 -30.64 16 14 N -0.71 -19.55 4.27 -499.32 -2.13 -21.68 16 15 C 0.15 3.44 4.37 36.72 0.16 3.60 16 16 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 17 C -0.08 -1.08 7.93 21.45 0.17 -0.91 16 18 C -0.15 -2.91 4.12 -18.74 -0.08 -2.99 16 19 H 0.09 1.94 5.97 -2.39 -0.01 1.93 16 20 C -0.09 -1.59 6.65 31.27 0.21 -1.38 16 21 C -0.12 -2.85 6.99 32.67 0.23 -2.62 16 22 C -0.10 -3.12 6.63 30.79 0.20 -2.92 16 23 C -0.17 -4.03 4.01 -20.12 -0.08 -4.11 16 24 H 0.12 2.27 7.42 -2.38 -0.02 2.25 16 25 C -0.17 -6.92 9.96 30.62 0.30 -6.61 16 26 C -0.15 -7.10 9.15 30.62 0.28 -6.82 16 27 H 0.26 14.41 8.32 -92.71 -0.77 13.64 16 28 H 0.02 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.03 1.54 8.09 -2.38 -0.02 1.52 16 30 H 0.41 13.82 8.47 -92.71 -0.79 13.03 16 31 H 0.41 8.72 7.76 -92.71 -0.72 8.00 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.13 1.18 7.54 -2.39 -0.02 1.16 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.02 0.89 7.41 -2.39 -0.02 0.87 16 40 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.06 3.24 8.14 -2.39 -0.02 3.23 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -67.92 344.86 0.87 -67.05 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.50 Total: 33.15 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 3.89 Total: -10.27 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -4.47 Total: -104.47 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.06 Total: -30.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.92 0.87 -67.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894567414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.590 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds