Wall clock time and date at job start Tue Mar 31 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47303 * 119.99750 * 3 2 1 6 6 H 1.48498 * 109.46916 * 240.00028 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21582 * 119.99897 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.46507 * 120.00128 * 179.97438 * 14 12 11 16 16 H 1.08994 * 112.77698 * 25.33378 * 15 14 12 17 17 C 1.53630 * 113.52438 * 254.41480 * 15 14 12 18 18 C 1.53655 * 87.53897 * 221.17889 * 17 15 14 19 19 H 1.09004 * 116.77654 * 142.50007 * 18 17 15 20 20 C 1.54682 * 113.34598 * 279.66720 * 18 17 15 21 21 C 1.54882 * 102.82459 * 131.25650 * 20 18 17 22 22 C 1.54231 * 104.20401 * 321.95013 * 21 20 18 23 23 C 1.53815 * 113.52348 * 156.24853 * 15 14 12 24 24 H 1.09002 * 115.62787 * 21.01872 * 23 15 14 25 25 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 26 26 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 27 27 H 0.97004 * 120.00131 * 175.40434 * 1 2 3 28 28 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 29 29 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 30 30 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 31 31 H 0.97003 * 120.00028 * 0.02562 * 14 12 11 32 32 H 1.08998 * 113.52840 * 335.83409 * 17 15 14 33 33 H 1.08996 * 113.52718 * 106.47324 * 17 15 14 34 34 H 1.09008 * 110.73933 * 249.58567 * 20 18 17 35 35 H 1.08990 * 110.74347 * 12.91729 * 20 18 17 36 36 H 1.08996 * 110.48638 * 80.63183 * 21 20 18 37 37 H 1.08997 * 110.48395 * 203.13907 * 21 20 18 38 38 H 1.09000 * 110.02406 * 264.33249 * 22 21 20 39 39 H 1.09000 * 110.02308 * 142.93457 * 22 21 20 40 40 H 1.08998 * 117.49575 * 0.02562 * 25 9 7 41 41 H 1.08997 * 117.50012 * 145.01699 * 25 9 7 42 42 H 1.09003 * 117.50343 * 214.97736 * 26 9 7 43 43 H 1.09005 * 117.49813 * 359.97287 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3538 -4.3149 3.5028 14 7 2.4977 -4.2916 4.0827 15 6 2.2069 -4.9638 5.3516 16 1 1.2960 -5.5611 5.3136 17 6 2.2782 -4.0310 6.5702 18 6 2.9826 -5.1725 7.3196 19 1 3.7838 -4.8906 8.0028 20 6 2.0070 -6.2430 7.8627 21 6 2.6535 -7.5687 7.3898 22 6 3.2012 -7.2428 5.9853 23 6 3.4124 -5.7191 5.9366 24 1 4.3899 -5.3976 5.5770 25 6 1.7685 -3.4728 -1.2214 26 6 0.4684 -2.6991 -1.4543 27 1 -0.4850 -0.8374 -0.0673 28 1 -0.0008 -2.3646 1.5812 29 1 0.1322 -3.9993 0.8898 30 1 2.6774 -3.1487 1.8351 31 1 3.4101 -4.0482 3.8608 32 1 2.9112 -3.1576 6.4132 33 1 1.3013 -3.7769 6.9814 34 1 1.9580 -6.2041 8.9509 35 1 1.0162 -6.1194 7.4259 36 1 3.4647 -7.8572 8.0581 37 1 1.9056 -8.3597 7.3357 38 1 2.4810 -7.5442 5.2247 39 1 4.1495 -7.7562 5.8262 40 1 2.6422 -3.1764 -1.8019 41 1 1.6882 -4.5377 -1.0033 42 1 -0.4668 -3.2553 -1.3895 43 1 0.4861 -1.8933 -2.1882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894567415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:31 Heat of formation + Delta-G solvation = -6.002564 kcal Electronic energy + Delta-G solvation = -21842.606130 eV Core-core repulsion = 18695.134681 eV Total energy + Delta-G solvation = -3147.471449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78153 -38.99654 -36.98927 -34.18999 -33.31563 -31.92499 -31.67723 -28.93203 -26.29292 -24.90380 -24.53059 -23.11870 -21.36966 -20.94822 -20.17829 -19.61893 -18.81050 -17.55802 -17.00051 -16.39944 -15.15532 -15.03646 -14.81880 -14.31100 -14.12261 -13.77061 -13.69635 -13.47101 -13.19042 -12.73515 -12.56115 -12.35340 -12.09604 -11.69708 -11.40725 -11.25041 -10.94560 -10.92717 -10.81830 -10.72448 -10.48628 -10.41810 -10.26910 -10.14965 -9.78108 -9.55292 -8.80068 -8.64190 -8.48673 -8.39048 -8.04440 -6.39187 -4.15065 3.22778 3.39817 3.41074 3.60031 3.73314 4.11847 4.34151 4.43148 4.47072 4.77043 4.87401 5.02081 5.08674 5.17066 5.23228 5.29983 5.31030 5.39878 5.50555 5.61824 5.63868 5.82232 5.83839 5.84519 5.89234 5.99716 6.12342 6.16331 6.22298 6.25456 6.31326 6.43660 6.54297 6.67218 6.85697 6.86611 7.19022 7.21307 7.29914 7.54196 8.17636 8.33333 8.64218 8.82006 9.18059 9.61196 11.00237 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.003806 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.251313 B = 7354.282328 C = 7910.661641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.029 3.971 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.577 4.577 8 H 0.052 0.948 9 C 0.006 3.994 10 C 0.178 3.822 11 N -0.719 5.719 12 C 0.698 3.302 13 O -0.606 6.606 14 N -0.742 5.742 15 C 0.156 3.844 16 H 0.111 0.889 17 C -0.147 4.147 18 C -0.112 4.112 19 H 0.089 0.911 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.123 4.123 24 H 0.098 0.902 25 C -0.194 4.194 26 C -0.172 4.172 27 H 0.276 0.724 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.398 0.602 31 H 0.394 0.606 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -11.634 12.371 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.614 4.614 8 H 0.070 0.930 9 C 0.005 3.995 10 C 0.054 3.946 11 N -0.371 5.371 12 C 0.398 3.602 13 O -0.486 6.486 14 N -0.397 5.397 15 C 0.049 3.951 16 H 0.129 0.871 17 C -0.186 4.186 18 C -0.131 4.131 19 H 0.107 0.893 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.142 4.142 24 H 0.116 0.884 25 C -0.231 4.231 26 C -0.210 4.210 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.231 0.769 31 H 0.227 0.773 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.856 -10.256 12.632 17.657 hybrid contribution 1.110 -1.391 -0.372 1.818 sum 7.967 -11.648 12.260 18.694 Atomic orbital electron populations 1.70729 1.06823 1.31749 1.43993 1.25762 0.96522 1.02278 0.93180 0.83574 0.74944 0.75542 0.76429 1.20792 1.21534 1.21484 1.21161 0.94068 0.89693 1.56520 0.92975 1.19332 0.98978 0.95451 0.85720 1.20861 0.87572 0.97069 0.89145 1.45042 1.12185 1.61825 1.18049 1.16090 0.84719 0.78943 0.80446 1.90854 1.19870 1.60326 1.77501 1.45114 1.09429 1.65213 1.19937 1.22341 0.98262 0.93466 0.80995 0.87093 1.23371 1.01263 0.97324 0.96649 1.23139 0.98479 0.96054 0.95427 0.89253 1.22393 0.98544 0.93786 1.00381 1.22379 0.99866 0.97408 0.96284 1.22087 1.01077 0.94919 0.97394 1.23783 0.98595 0.95056 0.96749 0.88370 1.22889 0.97866 0.95580 1.06775 1.22748 0.93361 1.02169 1.02751 0.91237 0.92192 0.94408 0.76851 0.77290 0.89818 0.90988 0.91486 0.90886 0.91735 0.91629 0.91401 0.91934 0.90120 0.91433 0.91274 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.57 55.43 0.75 -25.34 16 2 C 0.03 0.80 5.39 -17.82 -0.10 0.70 16 3 Si 1.07 24.24 29.91 -169.99 -5.08 19.15 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.58 -15.03 8.44 -34.44 -0.29 -15.32 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.01 0.14 0.99 -155.66 -0.15 -0.01 16 10 C 0.18 4.10 5.43 -4.04 -0.02 4.08 16 11 N -0.72 -14.47 5.46 -65.23 -0.36 -14.83 16 12 C 0.70 13.72 8.57 -86.92 -0.74 12.98 16 13 O -0.61 -14.21 15.96 5.29 0.08 -14.12 16 14 N -0.74 -10.90 5.36 -57.94 -0.31 -11.21 16 15 C 0.16 2.01 3.25 -67.18 -0.22 1.79 16 16 H 0.11 1.67 6.79 -51.93 -0.35 1.31 16 17 C -0.15 -1.70 7.36 -26.06 -0.19 -1.89 16 18 C -0.11 -1.04 4.97 -88.45 -0.44 -1.48 16 19 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.11 -0.99 6.28 -24.85 -0.16 -1.15 16 21 C -0.12 -0.99 6.83 -25.10 -0.17 -1.16 16 22 C -0.12 -1.07 6.39 -25.61 -0.16 -1.23 16 23 C -0.12 -1.19 4.65 -88.77 -0.41 -1.61 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.19 -4.05 9.96 -26.69 -0.27 -4.31 16 26 C -0.17 -3.87 8.74 -26.69 -0.23 -4.11 16 27 H 0.28 7.99 6.19 -40.82 -0.25 7.74 16 28 H 0.06 1.57 7.82 -51.93 -0.41 1.17 16 29 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 30 H 0.40 7.38 8.24 -40.82 -0.34 7.05 16 31 H 0.39 4.75 8.75 -40.82 -0.36 4.40 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.72 7.30 -51.93 -0.38 0.34 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -30.80 345.40 -10.46 -41.26 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.19 Total: 12.59 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.56 Total: -12.71 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.09 Total: -51.38 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.80 -10.46 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894567415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.257 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds