Wall clock time and date at job start Tue Mar 31 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47001 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47303 * 119.99750 * 3 2 1 6 6 H 1.48498 * 109.46916 * 240.00028 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00134 * 187.13091 * 7 2 1 9 9 C 1.50696 * 119.99802 * 7.13436 * 7 2 1 10 10 C 1.53002 * 115.55193 * 275.21021 * 9 7 2 11 11 N 1.46505 * 109.47002 * 297.93943 * 10 9 7 12 12 C 1.34775 * 119.99989 * 184.66830 * 11 10 9 13 13 O 1.21582 * 119.99897 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00005 * 180.02562 * 12 11 10 15 15 C 1.46507 * 120.00128 * 179.97438 * 14 12 11 16 16 H 1.08994 * 112.77698 * 25.33378 * 15 14 12 17 17 C 1.53630 * 113.52438 * 254.41480 * 15 14 12 18 18 C 1.53655 * 87.53897 * 221.17889 * 17 15 14 19 19 H 1.09004 * 116.77654 * 142.50007 * 18 17 15 20 20 C 1.54682 * 113.34598 * 279.66720 * 18 17 15 21 21 C 1.54882 * 102.82459 * 131.25650 * 20 18 17 22 22 C 1.54231 * 104.20401 * 321.95013 * 21 20 18 23 23 C 1.53815 * 113.52348 * 156.24853 * 15 14 12 24 24 H 1.09002 * 115.62787 * 21.01872 * 23 15 14 25 25 C 1.53008 * 117.49853 * 129.54157 * 9 7 2 26 26 C 1.53000 * 117.50221 * 60.88313 * 9 7 2 27 27 H 0.97004 * 120.00131 * 175.40434 * 1 2 3 28 28 H 1.08996 * 109.47248 * 57.93926 * 10 9 7 29 29 H 1.08998 * 109.47484 * 177.94245 * 10 9 7 30 30 H 0.97003 * 120.00045 * 4.67435 * 11 10 9 31 31 H 0.97003 * 120.00028 * 0.02562 * 14 12 11 32 32 H 1.08998 * 113.52840 * 335.83409 * 17 15 14 33 33 H 1.08996 * 113.52718 * 106.47324 * 17 15 14 34 34 H 1.09008 * 110.73933 * 249.58567 * 20 18 17 35 35 H 1.08990 * 110.74347 * 12.91729 * 20 18 17 36 36 H 1.08996 * 110.48638 * 80.63183 * 21 20 18 37 37 H 1.08997 * 110.48395 * 203.13907 * 21 20 18 38 38 H 1.09000 * 110.02406 * 264.33249 * 22 21 20 39 39 H 1.09000 * 110.02308 * 142.93457 * 22 21 20 40 40 H 1.08998 * 117.49575 * 0.02562 * 25 9 7 41 41 H 1.08997 * 117.50012 * 145.01699 * 25 9 7 42 42 H 1.09003 * 117.50343 * 214.97736 * 26 9 7 43 43 H 1.09005 * 117.49813 * 359.97287 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0783 -1.1977 0.1166 9 6 1.2597 -2.4941 -0.1610 10 6 0.6775 -3.0853 1.1246 11 7 1.7650 -3.3915 2.0574 12 6 1.4975 -4.0104 3.2244 13 8 0.3538 -4.3149 3.5028 14 7 2.4977 -4.2916 4.0827 15 6 2.2069 -4.9638 5.3516 16 1 1.2960 -5.5611 5.3136 17 6 2.2782 -4.0310 6.5702 18 6 2.9826 -5.1725 7.3196 19 1 3.7838 -4.8906 8.0028 20 6 2.0070 -6.2430 7.8627 21 6 2.6535 -7.5687 7.3898 22 6 3.2012 -7.2428 5.9853 23 6 3.4124 -5.7191 5.9366 24 1 4.3899 -5.3976 5.5770 25 6 1.7685 -3.4728 -1.2214 26 6 0.4684 -2.6991 -1.4543 27 1 -0.4850 -0.8374 -0.0673 28 1 -0.0008 -2.3646 1.5812 29 1 0.1322 -3.9993 0.8898 30 1 2.6774 -3.1487 1.8351 31 1 3.4101 -4.0482 3.8608 32 1 2.9112 -3.1576 6.4132 33 1 1.3013 -3.7769 6.9814 34 1 1.9580 -6.2041 8.9509 35 1 1.0162 -6.1194 7.4259 36 1 3.4647 -7.8572 8.0581 37 1 1.9056 -8.3597 7.3357 38 1 2.4810 -7.5442 5.2247 39 1 4.1495 -7.7562 5.8262 40 1 2.6422 -3.1764 -1.8019 41 1 1.6882 -4.5377 -1.0033 42 1 -0.4668 -3.2553 -1.3895 43 1 0.4861 -1.8933 -2.1882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894567415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:31 Heat of formation + Delta-G solvation = -24.719270 kcal Electronic energy + Delta-G solvation = -21843.417747 eV Core-core repulsion = 18695.134681 eV Total energy + Delta-G solvation = -3148.283066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.78665 -40.47235 -38.78259 -35.38735 -35.00522 -33.93466 -32.71109 -29.73623 -27.96893 -26.85831 -25.48852 -24.18421 -23.11315 -22.01401 -21.55735 -21.32904 -19.89922 -19.04060 -18.35107 -17.90777 -16.57130 -16.38373 -15.98185 -15.79774 -15.59681 -15.14045 -14.98267 -14.81053 -14.56673 -14.31368 -14.17113 -13.71022 -13.40195 -12.95672 -12.81876 -12.61187 -12.23466 -12.18946 -11.96530 -11.95321 -11.74537 -11.54797 -11.45794 -11.36020 -11.20212 -11.12949 -10.56817 -10.44594 -10.33661 -10.18784 -9.62086 -8.51888 -6.27699 1.56606 1.63231 1.79336 1.81462 2.16353 2.60270 3.16896 3.25200 3.33280 3.48208 3.50842 3.69379 3.92430 4.05280 4.30965 4.35408 4.36550 4.37673 4.44628 4.54908 4.55812 4.66685 4.68068 4.79684 4.82910 4.83074 4.90534 5.03066 5.04739 5.06628 5.12095 5.21516 5.32266 5.34564 5.41921 5.44287 5.52862 5.59916 5.71418 6.11377 6.14495 6.27070 6.69964 7.18132 7.55827 7.62782 8.87768 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.003806 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.251313 B = 7354.282328 C = 7910.661641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 1.110 2.890 4 H -0.293 1.293 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.576 4.576 8 H 0.055 0.945 9 C -0.017 4.017 10 C 0.194 3.806 11 N -0.715 5.715 12 C 0.694 3.306 13 O -0.648 6.648 14 N -0.722 5.722 15 C 0.139 3.861 16 H 0.084 0.916 17 C -0.149 4.149 18 C -0.098 4.098 19 H 0.112 0.888 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.117 0.883 25 C -0.162 4.162 26 C -0.178 4.178 27 H 0.264 0.736 28 H 0.018 0.982 29 H 0.037 0.963 30 H 0.407 0.593 31 H 0.410 0.590 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.074 -12.508 13.331 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.221 4.221 3 Si 0.933 3.067 4 H -0.219 1.219 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.613 4.613 8 H 0.073 0.927 9 C -0.018 4.018 10 C 0.069 3.931 11 N -0.368 5.368 12 C 0.394 3.606 13 O -0.532 6.532 14 N -0.377 5.377 15 C 0.033 3.967 16 H 0.102 0.898 17 C -0.188 4.188 18 C -0.117 4.117 19 H 0.131 0.869 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.128 4.128 24 H 0.135 0.865 25 C -0.199 4.199 26 C -0.217 4.217 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.242 0.758 31 H 0.246 0.754 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.837 -11.158 13.613 20.164 hybrid contribution 0.189 -1.180 -0.647 1.359 sum 10.026 -12.338 12.965 20.514 Atomic orbital electron populations 1.70838 1.07971 1.31105 1.46889 1.27040 0.96520 1.05837 0.92688 0.83005 0.74104 0.71821 0.77720 1.21913 1.19796 1.19598 1.21459 0.94322 0.90646 1.54913 0.92662 1.19317 1.00323 0.95888 0.86296 1.20456 0.87747 0.95716 0.89216 1.44855 1.11858 1.62058 1.18041 1.16291 0.84985 0.78638 0.80659 1.90824 1.22025 1.61977 1.78326 1.45007 1.09116 1.64061 1.19496 1.22588 0.99220 0.94415 0.80437 0.89796 1.23380 1.01035 0.98115 0.96315 1.23123 0.98555 0.94559 0.95422 0.86944 1.22423 0.97581 0.94203 1.01258 1.22379 1.00362 0.96930 0.95870 1.22110 1.01462 0.94477 0.97589 1.23765 0.97644 0.95200 0.96220 0.86517 1.22893 0.96870 0.96153 1.04010 1.22700 0.94888 1.02361 1.01709 0.92536 0.96382 0.94476 0.75776 0.75400 0.89376 0.92522 0.89953 0.92867 0.89927 0.91560 0.93221 0.90292 0.89366 0.89181 0.90272 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.57 21.45 0.29 -55.11 16 2 C -0.02 -1.12 5.39 84.66 0.46 -0.66 16 3 Si 1.11 48.45 29.91 68.60 2.05 50.50 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.58 -29.76 8.44 25.60 0.22 -29.55 16 8 H 0.06 2.76 7.82 -2.91 -0.02 2.74 16 9 C -0.02 -0.82 0.99 -52.93 -0.05 -0.87 16 10 C 0.19 9.13 5.43 86.38 0.47 9.60 16 11 N -0.71 -28.76 5.46 -478.54 -2.61 -31.37 16 12 C 0.69 27.54 8.57 179.06 1.53 29.08 16 13 O -0.65 -31.46 15.96 -3.97 -0.06 -31.53 16 14 N -0.72 -20.66 5.36 -455.49 -2.44 -23.10 16 15 C 0.14 3.52 3.25 45.48 0.15 3.67 16 16 H 0.08 2.62 6.79 -2.39 -0.02 2.61 16 17 C -0.15 -3.32 7.36 31.03 0.23 -3.09 16 18 C -0.10 -1.57 4.97 -9.39 -0.05 -1.62 16 19 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 20 C -0.12 -1.86 6.28 31.81 0.20 -1.66 16 21 C -0.12 -1.64 6.83 31.65 0.22 -1.42 16 22 C -0.12 -1.91 6.39 31.32 0.20 -1.71 16 23 C -0.11 -1.87 4.65 -9.60 -0.04 -1.91 16 24 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 25 C -0.16 -6.47 9.96 30.62 0.30 -6.16 16 26 C -0.18 -8.01 8.74 30.62 0.27 -7.74 16 27 H 0.26 15.88 6.19 -92.71 -0.57 15.31 16 28 H 0.02 0.99 7.82 -2.39 -0.02 0.97 16 29 H 0.04 1.72 8.11 -2.39 -0.02 1.71 16 30 H 0.41 14.68 8.24 -92.71 -0.76 13.91 16 31 H 0.41 9.11 8.75 -92.71 -0.81 8.29 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 1.05 7.30 -2.39 -0.02 1.03 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 0.99 7.88 -2.39 -0.02 0.97 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.33 16 43 H 0.07 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -67.98 345.40 0.95 -67.03 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.37 Total: 37.64 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.10 Total: -14.05 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.76 Total: -109.59 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.06 Total: -31.53 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Total: -67.98 0.95 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894567415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.309 kcal (2) G-P(sol) polarization free energy of solvation -67.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds