Wall clock time and date at job start Tue Mar 31 2020 00:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48504 * 109.46796 * 269.99831 * 3 2 1 5 5 H 1.48494 * 109.47430 * 29.99731 * 3 2 1 6 6 H 1.48500 * 109.46930 * 149.99875 * 3 2 1 7 7 C 1.37878 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00602 * 172.47773 * 7 2 1 9 9 C 1.50704 * 119.99707 * 352.47375 * 7 2 1 10 10 C 1.53000 * 115.55291 * 294.68776 * 9 7 2 11 11 N 1.46503 * 109.46823 * 275.68590 * 10 9 7 12 12 C 1.34783 * 119.99546 * 185.00217 * 11 10 9 13 13 O 1.21585 * 120.00031 * 4.84560 * 12 11 10 14 14 N 1.34783 * 119.99570 * 184.85223 * 12 11 10 15 15 C 1.46730 * 125.25188 * 354.68668 * 14 12 11 16 16 C 1.53906 * 106.63064 * 198.68595 * 15 14 12 17 17 C 1.53859 * 103.80805 * 332.24800 * 16 15 14 18 18 H 1.09003 * 111.26216 * 265.86914 * 17 16 15 19 19 C 1.53360 * 110.29046 * 141.34741 * 17 16 15 20 20 C 1.54263 * 106.47072 * 241.83434 * 19 17 16 21 21 C 1.54680 * 104.11559 * 26.02992 * 20 19 17 22 22 C 1.46891 * 125.24703 * 174.99140 * 14 12 11 23 23 H 1.09004 * 111.83612 * 301.46003 * 22 14 12 24 24 C 1.52996 * 117.51889 * 80.39052 * 9 7 2 25 25 C 1.52996 * 60.00314 * 107.48070 * 24 9 7 26 26 H 0.97003 * 119.99721 * 5.00824 * 1 2 3 27 27 H 1.08993 * 109.47574 * 155.68437 * 10 9 7 28 28 H 1.09004 * 109.47137 * 35.67895 * 10 9 7 29 29 H 0.96992 * 120.00348 * 4.99409 * 11 10 9 30 30 H 1.09005 * 110.04046 * 318.06651 * 15 14 12 31 31 H 1.08996 * 110.04864 * 79.52239 * 15 14 12 32 32 H 1.09003 * 110.69543 * 213.58862 * 16 15 14 33 33 H 1.08994 * 110.50930 * 90.81917 * 16 15 14 34 34 H 1.09001 * 110.05218 * 1.08892 * 19 17 16 35 35 H 1.09001 * 110.05428 * 122.58103 * 19 17 16 36 36 H 1.08997 * 110.50348 * 144.68900 * 20 19 17 37 37 H 1.09004 * 110.50179 * 267.37663 * 20 19 17 38 38 H 1.09000 * 110.61915 * 204.15768 * 21 20 19 39 39 H 1.09001 * 110.61674 * 81.16795 * 21 20 19 40 40 H 1.09004 * 117.49844 * 214.97512 * 24 9 7 41 41 H 1.09008 * 117.49686 * 359.97438 * 24 9 7 42 42 H 1.09002 * 117.49661 * 252.51237 * 25 24 9 43 43 H 1.09000 * 117.50115 * 107.48875 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0775 -1.1982 -0.1219 9 6 1.2607 -2.4935 0.1721 10 6 0.5801 -2.6902 1.5281 11 7 1.5506 -3.2200 2.4893 12 6 1.1505 -3.5686 3.7282 13 8 -0.0289 -3.5269 4.0205 14 7 2.0581 -3.9632 4.6433 15 6 3.4889 -4.1617 4.3860 16 6 4.0246 -5.0399 5.5308 17 6 3.0899 -4.7172 6.7095 18 1 3.5058 -3.9314 7.3401 19 6 2.7884 -5.9884 7.5126 20 6 1.2651 -6.2137 7.4193 21 6 0.8624 -5.5250 6.0941 22 6 1.7661 -4.2670 6.0505 23 1 1.3240 -3.4145 6.5661 24 6 0.5647 -3.0774 -1.0589 25 6 1.8361 -3.7330 -0.5160 26 1 -0.4850 0.8369 -0.0733 27 1 -0.2462 -3.3929 1.4214 28 1 0.1996 -1.7335 1.8860 29 1 2.4810 -3.3200 2.2340 30 1 3.6302 -4.6657 3.4298 31 1 4.0047 -3.2015 4.3824 32 1 5.0530 -4.7719 5.7730 33 1 3.9571 -6.0951 5.2663 34 1 3.3190 -6.8374 7.0817 35 1 3.0830 -5.8518 8.5531 36 1 1.0385 -7.2791 7.3801 37 1 0.7575 -5.7452 8.2625 38 1 -0.1898 -5.2411 6.1133 39 1 1.0698 -6.1760 5.2448 40 1 -0.3781 -3.6017 -0.9027 41 1 0.6444 -2.5215 -1.9932 42 1 2.7523 -3.6085 -1.0932 43 1 1.7297 -4.6886 -0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894567914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:43 Heat of formation + Delta-G solvation = -13.941517 kcal Electronic energy + Delta-G solvation = -22409.595082 eV Core-core repulsion = 19261.779374 eV Total energy + Delta-G solvation = -3147.815708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44136 -38.31838 -36.60920 -34.58045 -32.99001 -32.02719 -31.51070 -27.97287 -27.26299 -25.98209 -24.87882 -22.67053 -21.23535 -20.75515 -19.98138 -19.31434 -18.97421 -17.78611 -16.42791 -15.87308 -15.45243 -15.07134 -14.63428 -14.42473 -13.97036 -13.83560 -13.61764 -13.24843 -12.89754 -12.75654 -12.50628 -12.09766 -11.83364 -11.61927 -11.46233 -11.18543 -10.98956 -10.93898 -10.89480 -10.75153 -10.67479 -10.51977 -10.48046 -10.28665 -9.67158 -9.41727 -9.02839 -8.58174 -8.42612 -8.19298 -7.88109 -6.06480 -4.13149 3.09756 3.26900 3.35161 3.36886 3.79662 4.21540 4.36649 4.44588 4.52879 4.68634 5.02062 5.04127 5.15953 5.21086 5.29673 5.39462 5.42807 5.46703 5.57403 5.64050 5.70883 5.78304 5.79855 5.92040 6.02198 6.03917 6.18827 6.28118 6.32430 6.33551 6.49793 6.61977 6.64549 6.71259 6.95568 7.07256 7.34732 7.46712 7.54736 7.64882 7.85829 8.36601 8.64916 8.86428 9.25311 9.51596 11.01302 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.004439 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.890576 B = 6306.194001 C = 6584.182538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.181 3.819 11 N -0.725 5.725 12 C 0.715 3.285 13 O -0.595 6.595 14 N -0.637 5.637 15 C 0.101 3.899 16 C -0.122 4.122 17 C -0.102 4.102 18 H 0.085 0.915 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.127 4.127 22 C 0.159 3.841 23 H 0.082 0.918 24 C -0.164 4.164 25 C -0.208 4.208 26 H 0.262 0.738 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.393 0.607 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -11.023 12.551 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.034 3.966 10 C 0.058 3.942 11 N -0.378 5.378 12 C 0.417 3.583 13 O -0.474 6.474 14 N -0.377 5.377 15 C -0.023 4.023 16 C -0.160 4.160 17 C -0.121 4.121 18 H 0.104 0.896 19 C -0.151 4.151 20 C -0.163 4.163 21 C -0.165 4.165 22 C 0.054 3.946 23 H 0.100 0.900 24 C -0.202 4.202 25 C -0.246 4.246 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.226 0.774 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.728 -10.779 12.727 17.984 hybrid contribution 0.900 0.943 -0.326 1.344 sum 7.628 -9.836 12.401 17.570 Atomic orbital electron populations 1.69967 1.05897 1.26995 1.48123 1.24982 0.94796 0.98963 0.94398 0.86621 0.79946 0.83544 0.78092 1.20677 1.21126 1.19829 1.20412 0.93074 0.88763 1.51416 0.92187 1.19083 0.97645 0.91413 0.88447 1.20888 0.88469 0.97606 0.87220 1.45339 1.13250 1.67832 1.11331 1.15582 0.84047 0.78195 0.80460 1.90869 1.15174 1.61698 1.79680 1.47472 1.07490 1.73152 1.09564 1.21871 0.82115 0.99414 0.98851 1.22447 0.99096 1.00219 0.94209 1.22326 0.95113 0.98081 0.96545 0.89639 1.22099 0.96672 0.96619 0.99702 1.22347 0.95367 1.00525 0.98047 1.22803 1.00522 0.96204 0.97005 1.22091 0.94773 0.96776 0.80940 0.89990 1.22705 0.93383 1.03593 1.00562 1.22872 0.97771 0.96968 1.06946 0.92769 0.94329 0.90470 0.77386 0.91228 0.91888 0.90186 0.90714 0.91408 0.91720 0.91661 0.91569 0.90796 0.91359 0.91631 0.89991 0.90447 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.65 12.59 55.43 0.70 -23.95 16 2 C 0.07 1.96 5.23 -17.82 -0.09 1.87 16 3 Si 0.89 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.50 -13.12 8.83 -34.44 -0.30 -13.42 16 8 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 9 C 0.04 0.84 1.32 -155.66 -0.20 0.64 16 10 C 0.18 4.36 5.52 -4.04 -0.02 4.33 16 11 N -0.72 -14.92 5.42 -65.22 -0.35 -15.27 16 12 C 0.72 14.61 8.27 -86.91 -0.72 13.89 16 13 O -0.60 -14.32 16.13 5.29 0.09 -14.24 16 14 N -0.64 -10.06 2.93 -168.65 -0.49 -10.55 16 15 C 0.10 1.23 6.35 -3.44 -0.02 1.20 16 16 C -0.12 -1.11 6.46 -25.81 -0.17 -1.27 16 17 C -0.10 -0.98 3.70 -89.16 -0.33 -1.31 16 18 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.11 -0.93 6.41 -25.88 -0.17 -1.10 16 20 C -0.12 -1.18 6.85 -25.19 -0.17 -1.36 16 21 C -0.13 -1.66 5.76 -24.82 -0.14 -1.80 16 22 C 0.16 2.13 3.76 -65.86 -0.25 1.89 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 24 C -0.16 -3.76 9.88 -26.74 -0.26 -4.03 16 25 C -0.21 -4.33 9.78 -26.73 -0.26 -4.59 16 26 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 27 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 28 H 0.08 2.13 7.26 -51.93 -0.38 1.76 16 29 H 0.39 7.31 7.05 -40.82 -0.29 7.02 16 30 H 0.07 0.82 7.61 -51.93 -0.40 0.42 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.65 7.41 -51.93 -0.38 0.27 16 34 H 0.07 0.52 7.27 -51.93 -0.38 0.14 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.07 1.44 8.06 -51.93 -0.42 1.03 16 41 H 0.08 1.95 8.14 -51.92 -0.42 1.52 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -30.39 342.30 -10.31 -40.70 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.26 Total: 7.41 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.12 Total: -5.06 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.15 Total: -49.77 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.39 -10.31 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894567914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.757 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds