Wall clock time and date at job start Tue Mar 31 2020 00:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48504 * 109.46796 * 269.99831 * 3 2 1 5 5 H 1.48494 * 109.47430 * 29.99731 * 3 2 1 6 6 H 1.48500 * 109.46930 * 149.99875 * 3 2 1 7 7 C 1.37878 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00602 * 172.47773 * 7 2 1 9 9 C 1.50704 * 119.99707 * 352.47375 * 7 2 1 10 10 C 1.53000 * 115.55291 * 294.68776 * 9 7 2 11 11 N 1.46503 * 109.46823 * 275.68590 * 10 9 7 12 12 C 1.34783 * 119.99546 * 185.00217 * 11 10 9 13 13 O 1.21585 * 120.00031 * 4.84560 * 12 11 10 14 14 N 1.34783 * 119.99570 * 184.85223 * 12 11 10 15 15 C 1.46730 * 125.25188 * 354.68668 * 14 12 11 16 16 C 1.53906 * 106.63064 * 198.68595 * 15 14 12 17 17 C 1.53859 * 103.80805 * 332.24800 * 16 15 14 18 18 H 1.09003 * 111.26216 * 265.86914 * 17 16 15 19 19 C 1.53360 * 110.29046 * 141.34741 * 17 16 15 20 20 C 1.54263 * 106.47072 * 241.83434 * 19 17 16 21 21 C 1.54680 * 104.11559 * 26.02992 * 20 19 17 22 22 C 1.46891 * 125.24703 * 174.99140 * 14 12 11 23 23 H 1.09004 * 111.83612 * 301.46003 * 22 14 12 24 24 C 1.52996 * 117.51889 * 80.39052 * 9 7 2 25 25 C 1.52996 * 60.00314 * 107.48070 * 24 9 7 26 26 H 0.97003 * 119.99721 * 5.00824 * 1 2 3 27 27 H 1.08993 * 109.47574 * 155.68437 * 10 9 7 28 28 H 1.09004 * 109.47137 * 35.67895 * 10 9 7 29 29 H 0.96992 * 120.00348 * 4.99409 * 11 10 9 30 30 H 1.09005 * 110.04046 * 318.06651 * 15 14 12 31 31 H 1.08996 * 110.04864 * 79.52239 * 15 14 12 32 32 H 1.09003 * 110.69543 * 213.58862 * 16 15 14 33 33 H 1.08994 * 110.50930 * 90.81917 * 16 15 14 34 34 H 1.09001 * 110.05218 * 1.08892 * 19 17 16 35 35 H 1.09001 * 110.05428 * 122.58103 * 19 17 16 36 36 H 1.08997 * 110.50348 * 144.68900 * 20 19 17 37 37 H 1.09004 * 110.50179 * 267.37663 * 20 19 17 38 38 H 1.09000 * 110.61915 * 204.15768 * 21 20 19 39 39 H 1.09001 * 110.61674 * 81.16795 * 21 20 19 40 40 H 1.09004 * 117.49844 * 214.97512 * 24 9 7 41 41 H 1.09008 * 117.49686 * 359.97438 * 24 9 7 42 42 H 1.09002 * 117.49661 * 252.51237 * 25 24 9 43 43 H 1.09000 * 117.50115 * 107.48875 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0775 -1.1982 -0.1219 9 6 1.2607 -2.4935 0.1721 10 6 0.5801 -2.6902 1.5281 11 7 1.5506 -3.2200 2.4893 12 6 1.1505 -3.5686 3.7282 13 8 -0.0289 -3.5269 4.0205 14 7 2.0581 -3.9632 4.6433 15 6 3.4889 -4.1617 4.3860 16 6 4.0246 -5.0399 5.5308 17 6 3.0899 -4.7172 6.7095 18 1 3.5058 -3.9314 7.3401 19 6 2.7884 -5.9884 7.5126 20 6 1.2651 -6.2137 7.4193 21 6 0.8624 -5.5250 6.0941 22 6 1.7661 -4.2670 6.0505 23 1 1.3240 -3.4145 6.5661 24 6 0.5647 -3.0774 -1.0589 25 6 1.8361 -3.7330 -0.5160 26 1 -0.4850 0.8369 -0.0733 27 1 -0.2462 -3.3929 1.4214 28 1 0.1996 -1.7335 1.8860 29 1 2.4810 -3.3200 2.2340 30 1 3.6302 -4.6657 3.4298 31 1 4.0047 -3.2015 4.3824 32 1 5.0530 -4.7719 5.7730 33 1 3.9571 -6.0951 5.2663 34 1 3.3190 -6.8374 7.0817 35 1 3.0830 -5.8518 8.5531 36 1 1.0385 -7.2791 7.3801 37 1 0.7575 -5.7452 8.2625 38 1 -0.1898 -5.2411 6.1133 39 1 1.0698 -6.1760 5.2448 40 1 -0.3781 -3.6017 -0.9027 41 1 0.6444 -2.5215 -1.9932 42 1 2.7523 -3.6085 -1.0932 43 1 1.7297 -4.6886 -0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894567914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:42 Heat of formation + Delta-G solvation = -31.478036 kcal Electronic energy + Delta-G solvation = -22410.355522 eV Core-core repulsion = 19261.779374 eV Total energy + Delta-G solvation = -3148.576148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65540 -39.75026 -38.39120 -35.75807 -34.64733 -34.04621 -32.52186 -29.14907 -28.21523 -27.79485 -26.65910 -23.82958 -22.99007 -21.65655 -21.18971 -21.09549 -20.22020 -19.22968 -18.02480 -17.21925 -16.96467 -16.64563 -16.25724 -15.90369 -15.37195 -15.17252 -14.81800 -14.54554 -14.37123 -13.82464 -13.79862 -13.61067 -13.40556 -12.98337 -12.90781 -12.77638 -12.73052 -12.37088 -12.07443 -11.99258 -11.75402 -11.70774 -11.48330 -11.43949 -11.26144 -11.19474 -10.97386 -10.52795 -10.10592 -10.03106 -9.37185 -8.11595 -6.23249 1.40719 1.43858 1.52168 1.69281 2.19488 2.41253 3.06704 3.16675 3.42109 3.56991 3.61472 3.73886 4.18419 4.20598 4.22316 4.32561 4.42578 4.52827 4.55081 4.59781 4.63632 4.73211 4.76036 4.80545 4.81673 4.93892 5.01137 5.06013 5.08902 5.17451 5.20582 5.22942 5.31073 5.35224 5.47022 5.54704 5.56356 5.59150 5.71768 5.80582 6.17094 6.35445 6.81765 7.11621 7.44505 7.64747 8.96151 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023645 B = 0.004439 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.890576 B = 6306.194001 C = 6584.182538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.009 3.991 10 C 0.201 3.799 11 N -0.718 5.718 12 C 0.708 3.292 13 O -0.642 6.642 14 N -0.633 5.633 15 C 0.089 3.911 16 C -0.111 4.111 17 C -0.092 4.092 18 H 0.101 0.899 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.127 4.127 22 C 0.143 3.857 23 H 0.064 0.936 24 C -0.173 4.173 25 C -0.171 4.171 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.404 0.596 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.080 -12.371 13.780 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.008 3.992 10 C 0.077 3.923 11 N -0.372 5.372 12 C 0.410 3.590 13 O -0.524 6.524 14 N -0.370 5.370 15 C -0.033 4.033 16 C -0.148 4.148 17 C -0.111 4.111 18 H 0.119 0.881 19 C -0.143 4.143 20 C -0.156 4.156 21 C -0.165 4.165 22 C 0.039 3.961 23 H 0.082 0.918 24 C -0.212 4.212 25 C -0.208 4.208 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.239 0.761 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.033 -12.157 13.976 21.066 hybrid contribution -0.135 1.338 -0.693 1.513 sum 9.898 -10.818 13.283 19.785 Atomic orbital electron populations 1.70098 1.07381 1.27449 1.49642 1.25723 0.95444 1.02201 0.94357 0.85665 0.78865 0.79580 0.78243 1.19950 1.21794 1.18813 1.20724 0.93333 0.89772 1.50453 0.91858 1.19062 0.99158 0.92482 0.88504 1.20372 0.88870 0.95056 0.88042 1.45071 1.13136 1.67852 1.11181 1.15790 0.84163 0.78194 0.80858 1.90828 1.17539 1.63560 1.80500 1.47519 1.08570 1.71317 1.09636 1.22212 0.79665 1.00625 1.00777 1.22480 1.00194 1.00010 0.92150 1.22349 0.92634 0.99260 0.96819 0.88093 1.22098 0.95212 0.96112 1.00882 1.22322 0.96776 1.00767 0.95695 1.22721 0.98632 0.96302 0.98875 1.22400 0.97557 0.96340 0.79813 0.91835 1.22666 0.94856 1.04164 0.99508 1.22873 0.96936 0.96191 1.04763 0.93126 0.95742 0.94891 0.76070 0.90702 0.91440 0.87162 0.89790 0.89996 0.89489 0.90497 0.91051 0.94078 0.92705 0.91347 0.91203 0.89072 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.78 12.59 21.45 0.27 -52.51 16 2 C 0.02 1.27 5.23 84.65 0.44 1.71 16 3 Si 0.95 43.00 29.55 68.60 2.03 45.03 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.51 -26.53 8.83 25.60 0.23 -26.31 16 8 H 0.06 3.21 7.83 -2.91 -0.02 3.19 16 9 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 10 C 0.20 10.02 5.52 86.38 0.48 10.49 16 11 N -0.72 -30.04 5.42 -478.52 -2.59 -32.64 16 12 C 0.71 29.81 8.27 179.05 1.48 31.29 16 13 O -0.64 -32.64 16.13 -3.98 -0.06 -32.70 16 14 N -0.63 -19.86 2.93 -805.74 -2.36 -22.22 16 15 C 0.09 1.97 6.35 86.64 0.55 2.52 16 16 C -0.11 -1.57 6.46 31.19 0.20 -1.37 16 17 C -0.09 -1.48 3.70 -9.85 -0.04 -1.51 16 18 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 19 C -0.11 -1.32 6.41 31.14 0.20 -1.12 16 20 C -0.12 -2.00 6.85 31.60 0.22 -1.78 16 21 C -0.13 -3.34 5.76 31.83 0.18 -3.16 16 22 C 0.14 3.78 3.76 46.12 0.17 3.96 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 C -0.17 -7.97 9.88 30.59 0.30 -7.67 16 25 C -0.17 -6.80 9.78 30.59 0.30 -6.50 16 26 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 27 H 0.02 1.26 7.87 -2.39 -0.02 1.24 16 28 H 0.03 1.92 7.26 -2.38 -0.02 1.90 16 29 H 0.40 14.78 7.05 -92.71 -0.65 14.13 16 30 H 0.07 1.58 7.61 -2.38 -0.02 1.56 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.09 7.41 -2.39 -0.02 1.07 16 34 H 0.08 0.85 7.27 -2.39 -0.02 0.83 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 39 H 0.05 1.57 8.06 -2.39 -0.02 1.55 16 40 H 0.07 3.05 8.06 -2.38 -0.02 3.04 16 41 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 42 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -69.03 342.30 2.26 -66.77 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.33 Total: 27.36 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.65 Total: 0.91 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -4.68 Total: -107.36 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.06 Total: -32.70 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.03 2.26 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894567914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.293 kcal (2) G-P(sol) polarization free energy of solvation -69.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds