Wall clock time and date at job start Tue Mar 31 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 120.00053 * 2 1 4 4 H 1.48498 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47290 * 300.00631 * 3 2 1 6 6 H 1.48501 * 109.47160 * 60.00636 * 3 2 1 7 7 C 1.40049 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00144 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99885 * 351.84730 * 9 7 2 11 11 N 1.34782 * 120.00025 * 171.84120 * 9 7 2 12 12 C 1.47079 * 120.87764 * 174.85521 * 11 9 7 13 13 C 1.53243 * 108.52107 * 231.20397 * 12 11 9 14 14 N 1.46899 * 109.34043 * 306.17382 * 13 12 11 15 15 C 1.46892 * 111.00150 * 187.24904 * 14 13 12 16 16 C 1.52996 * 109.47465 * 170.00136 * 15 14 13 17 17 H 1.09000 * 109.64502 * 54.99735 * 16 15 14 18 18 C 1.53029 * 109.64137 * 294.58504 * 16 15 14 19 19 C 1.50169 * 110.09686 * 191.09503 * 18 16 15 20 20 C 1.29449 * 124.14362 * 16.71104 * 19 18 16 21 21 C 1.50063 * 124.07860 * 359.76563 * 20 19 18 22 22 C 1.53025 * 110.14935 * 17.12595 * 21 20 19 23 23 C 1.46908 * 111.26712 * 63.10171 * 14 13 12 24 24 C 1.47075 * 120.88173 * 354.87804 * 11 9 7 25 25 H 0.97000 * 119.99652 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.62632 * 111.50061 * 12 11 9 27 27 H 1.08997 * 109.79528 * 351.01089 * 12 11 9 28 28 H 1.08999 * 109.49611 * 186.21543 * 13 12 11 29 29 H 1.08997 * 109.50957 * 66.14502 * 13 12 11 30 30 H 1.08998 * 109.46941 * 50.00023 * 15 14 13 31 31 H 1.09005 * 109.47418 * 290.00190 * 15 14 13 32 32 H 1.08999 * 109.35419 * 311.08404 * 18 16 15 33 33 H 1.08990 * 109.36145 * 70.66779 * 18 16 15 34 34 H 1.07994 * 117.89168 * 196.91762 * 19 18 16 35 35 H 1.07996 * 117.95906 * 179.73615 * 20 19 18 36 36 H 1.09006 * 109.35825 * 256.92523 * 21 20 19 37 37 H 1.08997 * 109.36357 * 137.33405 * 21 20 19 38 38 H 1.08995 * 109.64381 * 190.88187 * 22 21 20 39 39 H 1.09000 * 109.63983 * 70.24785 * 22 21 20 40 40 H 1.09000 * 109.49114 * 56.85644 * 23 14 13 41 41 H 1.09006 * 109.49114 * 176.93583 * 23 14 13 42 42 H 1.09004 * 109.62823 * 248.50123 * 24 11 9 43 43 H 1.09006 * 109.62737 * 8.88688 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8821 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0675 -2.4858 0.1494 11 7 1.9387 -3.6418 -0.1667 12 6 1.2411 -4.9320 -0.0582 13 6 2.0172 -5.8247 0.9160 14 7 3.4191 -5.9108 0.4855 15 6 4.1579 -6.8919 1.2911 16 6 5.5311 -7.1375 0.6628 17 1 6.0560 -6.1892 0.5469 18 6 5.3595 -7.8007 -0.7056 19 6 6.6858 -8.2907 -1.2115 20 6 7.7338 -8.4481 -0.4682 21 6 7.7721 -8.1581 1.0037 22 6 6.3496 -8.0733 1.5613 23 6 4.0717 -4.5953 0.5292 24 6 3.3797 -3.6524 -0.4608 25 1 -0.4849 0.8401 0.0004 26 1 1.1989 -5.4089 -1.0375 27 1 0.2296 -4.7744 0.3161 28 1 1.5776 -6.8220 0.9246 29 1 1.9699 -5.3976 1.9176 30 1 3.6008 -7.8282 1.3242 31 1 4.2850 -6.5089 2.3037 32 1 4.6763 -8.6451 -0.6146 33 1 4.9454 -7.0777 -1.4082 34 1 6.7709 -8.5232 -2.2627 35 1 8.6368 -8.8112 -0.9364 36 1 8.2831 -7.2101 1.1720 37 1 8.3136 -8.9540 1.5149 38 1 6.3768 -7.6759 2.5759 39 1 5.8978 -9.0653 1.5651 40 1 3.9957 -4.1850 1.5362 41 1 5.1220 -4.7011 0.2574 42 1 3.5431 -4.0063 -1.4788 43 1 3.7826 -2.6451 -0.3543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895065292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:54 Heat of formation + Delta-G solvation = -22.051769 kcal Electronic energy + Delta-G solvation = -22150.713634 eV Core-core repulsion = 19002.546239 eV Total energy + Delta-G solvation = -3148.167395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.41724 -38.20285 -36.37537 -33.66928 -32.49762 -31.46245 -30.82993 -30.38921 -27.36470 -26.02386 -24.13925 -23.12748 -22.90773 -21.06184 -20.32882 -18.73335 -17.94458 -16.66828 -16.12389 -15.79835 -15.00955 -14.73767 -14.62116 -14.30810 -14.11643 -13.87619 -13.79973 -13.36537 -13.08439 -12.74152 -12.48898 -12.41632 -12.09669 -11.77519 -11.59424 -11.37402 -11.16269 -11.02474 -10.91892 -10.76497 -10.69541 -10.52476 -10.21921 -10.20991 -10.07665 -9.90227 -9.05277 -8.86937 -8.10643 -7.57093 -7.16206 -6.20152 -4.64053 2.21983 3.12291 3.20542 3.24520 4.01989 4.11802 4.55536 4.59107 4.64240 4.64650 4.81917 5.13758 5.20726 5.26173 5.36028 5.39283 5.52196 5.57729 5.64796 5.65153 5.71572 5.75552 5.77093 5.87619 5.90395 5.90981 5.93912 6.05853 6.14840 6.22070 6.27760 6.40042 6.49563 6.56650 6.58632 6.75069 6.89784 7.31684 7.34952 7.45963 7.63878 8.14573 8.38199 9.02466 9.45717 10.57940 10.76456 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.003850 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.883461 B = 7271.152964 C = 7843.148377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.126 3.874 13 C 0.046 3.954 14 N -0.533 5.533 15 C 0.060 3.940 16 C -0.084 4.084 17 H 0.075 0.925 18 C -0.077 4.077 19 C -0.148 4.148 20 C -0.168 4.168 21 C -0.088 4.088 22 C -0.115 4.115 23 C 0.039 3.961 24 C 0.128 3.872 25 H 0.268 0.732 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 -14.729 1.206 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.382 5.382 12 C 0.002 3.998 13 C -0.083 4.083 14 N -0.258 5.258 15 C -0.068 4.068 16 C -0.102 4.102 17 H 0.093 0.907 18 C -0.114 4.114 19 C -0.166 4.166 20 C -0.186 4.186 21 C -0.125 4.125 22 C -0.153 4.153 23 C -0.090 4.090 24 C 0.003 3.997 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.190 -14.762 0.798 19.812 hybrid contribution 0.647 0.944 0.762 1.375 sum 13.837 -13.817 1.560 19.617 Atomic orbital electron populations 1.70019 1.07079 1.27184 1.35543 1.25726 0.94601 1.00292 0.92560 0.86344 0.80510 0.81858 0.78233 1.18737 1.20141 1.20180 1.20990 0.93558 0.89282 1.54333 0.90923 1.18260 0.86755 0.82259 0.76110 1.90586 1.14724 1.86046 1.54843 1.48232 1.07799 1.05225 1.76959 1.21180 0.96606 0.84671 0.97354 1.22506 0.88483 0.99674 0.97663 1.61946 1.02122 1.07889 1.53860 1.22149 0.94226 0.96098 0.94352 1.21239 0.95035 0.98873 0.95083 0.90721 1.20401 0.94260 1.00129 0.96581 1.22234 0.95543 0.99610 0.99196 1.21985 0.98313 1.02485 0.95865 1.20404 0.97212 1.01532 0.93356 1.21633 0.95112 0.99910 0.98667 1.22614 0.98073 0.88966 0.99307 1.21482 0.82559 0.99340 0.96296 0.92152 0.93351 0.89814 0.90993 0.94949 0.91129 0.95201 0.91207 0.89830 0.88326 0.88497 0.91130 0.91465 0.91864 0.91833 0.94797 0.90638 0.93348 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.86 55.55 0.66 -22.47 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.05 29.56 -169.99 -5.02 15.02 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.54 -15.30 8.84 -35.63 -0.32 -15.62 16 8 H 0.07 1.86 5.73 -52.48 -0.30 1.56 16 9 C 0.56 16.11 7.61 -12.99 -0.10 16.01 16 10 O -0.58 -18.92 14.55 5.20 0.08 -18.85 16 11 N -0.64 -14.90 3.01 -174.12 -0.52 -15.43 16 12 C 0.13 2.54 6.58 -3.60 -0.02 2.51 16 13 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 14 N -0.53 -7.81 4.31 -234.32 -1.01 -8.82 16 15 C 0.06 0.71 4.35 -3.83 -0.02 0.70 16 16 C -0.08 -0.88 2.15 -90.40 -0.19 -1.07 16 17 H 0.07 0.86 6.19 -51.93 -0.32 0.54 16 18 C -0.08 -0.81 5.23 -28.12 -0.15 -0.96 16 19 C -0.15 -1.46 9.80 -35.85 -0.35 -1.81 16 20 C -0.17 -1.55 9.80 -35.90 -0.35 -1.90 16 21 C -0.09 -0.75 6.12 -28.18 -0.17 -0.92 16 22 C -0.12 -1.04 5.31 -26.51 -0.14 -1.18 16 23 C 0.04 0.62 5.46 -3.70 -0.02 0.60 16 24 C 0.13 2.43 6.52 -3.61 -0.02 2.41 16 25 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.85 7.11 -51.93 -0.37 1.49 16 28 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.79 7.93 -51.93 -0.41 0.37 16 31 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 34 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.02 6.08 -51.93 -0.32 0.71 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.86 5.38 -51.93 -0.28 1.58 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -33.08 333.71 -9.80 -42.89 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.03 Total: 0.80 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.97 Total: 1.83 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.88 Total: -46.71 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.08 -9.80 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.835 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds