Wall clock time and date at job start Tue Mar 31 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 120.00053 * 2 1 4 4 H 1.48498 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47290 * 300.00631 * 3 2 1 6 6 H 1.48501 * 109.47160 * 60.00636 * 3 2 1 7 7 C 1.40049 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00144 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99885 * 351.84730 * 9 7 2 11 11 N 1.34782 * 120.00025 * 171.84120 * 9 7 2 12 12 C 1.47079 * 120.87764 * 174.85521 * 11 9 7 13 13 C 1.53243 * 108.52107 * 231.20397 * 12 11 9 14 14 N 1.46899 * 109.34043 * 306.17382 * 13 12 11 15 15 C 1.46892 * 111.00150 * 187.24904 * 14 13 12 16 16 C 1.52996 * 109.47465 * 170.00136 * 15 14 13 17 17 H 1.09000 * 109.64502 * 54.99735 * 16 15 14 18 18 C 1.53029 * 109.64137 * 294.58504 * 16 15 14 19 19 C 1.50169 * 110.09686 * 191.09503 * 18 16 15 20 20 C 1.29449 * 124.14362 * 16.71104 * 19 18 16 21 21 C 1.50063 * 124.07860 * 359.76563 * 20 19 18 22 22 C 1.53025 * 110.14935 * 17.12595 * 21 20 19 23 23 C 1.46908 * 111.26712 * 63.10171 * 14 13 12 24 24 C 1.47075 * 120.88173 * 354.87804 * 11 9 7 25 25 H 0.97000 * 119.99652 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.62632 * 111.50061 * 12 11 9 27 27 H 1.08997 * 109.79528 * 351.01089 * 12 11 9 28 28 H 1.08999 * 109.49611 * 186.21543 * 13 12 11 29 29 H 1.08997 * 109.50957 * 66.14502 * 13 12 11 30 30 H 1.08998 * 109.46941 * 50.00023 * 15 14 13 31 31 H 1.09005 * 109.47418 * 290.00190 * 15 14 13 32 32 H 1.08999 * 109.35419 * 311.08404 * 18 16 15 33 33 H 1.08990 * 109.36145 * 70.66779 * 18 16 15 34 34 H 1.07994 * 117.89168 * 196.91762 * 19 18 16 35 35 H 1.07996 * 117.95906 * 179.73615 * 20 19 18 36 36 H 1.09006 * 109.35825 * 256.92523 * 21 20 19 37 37 H 1.08997 * 109.36357 * 137.33405 * 21 20 19 38 38 H 1.08995 * 109.64381 * 190.88187 * 22 21 20 39 39 H 1.09000 * 109.63983 * 70.24785 * 22 21 20 40 40 H 1.09000 * 109.49114 * 56.85644 * 23 14 13 41 41 H 1.09006 * 109.49114 * 176.93583 * 23 14 13 42 42 H 1.09004 * 109.62823 * 248.50123 * 24 11 9 43 43 H 1.09006 * 109.62737 * 8.88688 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8821 2.3964 1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0675 -2.4858 0.1494 11 7 1.9387 -3.6418 -0.1667 12 6 1.2411 -4.9320 -0.0582 13 6 2.0172 -5.8247 0.9160 14 7 3.4191 -5.9108 0.4855 15 6 4.1579 -6.8919 1.2911 16 6 5.5311 -7.1375 0.6628 17 1 6.0560 -6.1892 0.5469 18 6 5.3595 -7.8007 -0.7056 19 6 6.6858 -8.2907 -1.2115 20 6 7.7338 -8.4481 -0.4682 21 6 7.7721 -8.1581 1.0037 22 6 6.3496 -8.0733 1.5613 23 6 4.0717 -4.5953 0.5292 24 6 3.3797 -3.6524 -0.4608 25 1 -0.4849 0.8401 0.0004 26 1 1.1989 -5.4089 -1.0375 27 1 0.2296 -4.7744 0.3161 28 1 1.5776 -6.8220 0.9246 29 1 1.9699 -5.3976 1.9176 30 1 3.6008 -7.8282 1.3242 31 1 4.2850 -6.5089 2.3037 32 1 4.6763 -8.6451 -0.6146 33 1 4.9454 -7.0777 -1.4082 34 1 6.7709 -8.5232 -2.2627 35 1 8.6368 -8.8112 -0.9364 36 1 8.2831 -7.2101 1.1720 37 1 8.3136 -8.9540 1.5149 38 1 6.3768 -7.6759 2.5759 39 1 5.8978 -9.0653 1.5651 40 1 3.9957 -4.1850 1.5362 41 1 5.1220 -4.7011 0.2574 42 1 3.5431 -4.0063 -1.4788 43 1 3.7826 -2.6451 -0.3543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895065292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:53 Heat of formation + Delta-G solvation = -43.395736 kcal Electronic energy + Delta-G solvation = -22151.639178 eV Core-core repulsion = 19002.546239 eV Total energy + Delta-G solvation = -3149.092938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.66038 -39.52095 -38.02757 -35.26863 -34.62314 -32.62762 -31.90928 -31.45613 -29.04610 -27.72885 -25.31418 -24.59052 -23.75346 -22.56807 -21.43001 -20.47414 -18.70460 -18.51752 -17.81363 -16.88732 -16.53054 -16.02766 -15.95002 -15.79512 -15.62133 -15.44523 -14.82261 -14.43187 -14.37438 -14.05225 -13.68483 -13.51435 -13.27986 -13.17031 -13.04121 -12.78358 -12.72742 -12.64100 -12.39692 -12.18635 -12.04885 -11.94702 -11.84126 -11.34029 -11.10230 -10.96502 -10.94567 -9.79746 -9.76581 -9.41405 -8.99350 -8.30230 -6.84311 1.39628 1.39699 1.51023 1.57646 2.23288 2.45286 2.73113 3.01106 3.58751 3.78057 3.89012 3.97343 4.09829 4.14231 4.30791 4.32054 4.40835 4.45903 4.49787 4.58594 4.63168 4.70871 4.74118 4.81259 4.84516 4.89578 4.94545 4.96544 5.01704 5.11172 5.18331 5.20777 5.32680 5.38464 5.42294 5.56618 5.73957 5.87368 6.05549 6.13839 6.16098 6.18403 6.42124 6.87447 7.42110 8.45633 8.66663 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.003850 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.883461 B = 7271.152964 C = 7843.148377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.244 1.244 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.541 3.459 10 O -0.634 6.634 11 N -0.647 5.647 12 C 0.123 3.877 13 C 0.059 3.941 14 N -0.532 5.532 15 C 0.062 3.938 16 C -0.078 4.078 17 H 0.067 0.933 18 C -0.073 4.073 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.090 4.090 22 C -0.112 4.112 23 C 0.051 3.949 24 C 0.125 3.875 25 H 0.274 0.726 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.016 0.984 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.111 -15.437 1.441 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.167 1.167 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.605 4.605 8 H 0.111 0.889 9 C 0.347 3.653 10 O -0.522 6.522 11 N -0.384 5.384 12 C -0.001 4.001 13 C -0.070 4.070 14 N -0.256 5.256 15 C -0.065 4.065 16 C -0.097 4.097 17 H 0.085 0.915 18 C -0.110 4.110 19 C -0.181 4.181 20 C -0.184 4.184 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.078 4.078 24 C 0.001 3.999 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.299 -15.533 1.028 22.539 hybrid contribution -0.288 1.048 0.661 1.271 sum 16.011 -14.486 1.689 21.658 Atomic orbital electron populations 1.70194 1.09619 1.28860 1.36801 1.27008 0.95496 1.04996 0.91152 0.84992 0.79529 0.75427 0.78499 1.16669 1.19275 1.19532 1.21507 0.94755 0.89763 1.54496 0.88852 1.18698 0.86427 0.84241 0.75948 1.90531 1.16970 1.87340 1.57355 1.48131 1.09568 1.04939 1.75752 1.21292 0.95706 0.84162 0.98895 1.22329 0.89379 1.00019 0.95277 1.61940 1.01395 1.07747 1.54555 1.22228 0.94805 0.95532 0.93934 1.21181 0.94179 0.98957 0.95357 0.91462 1.20325 0.94770 0.99726 0.96181 1.22262 0.95468 1.00706 0.99694 1.22199 0.98446 1.01425 0.96311 1.20457 0.96999 1.02257 0.92962 1.21610 0.95163 0.99622 0.98586 1.22472 0.99181 0.88746 0.97387 1.21655 0.80221 1.00041 0.97964 0.91623 0.92308 0.92859 0.87904 0.96578 0.89820 0.95174 0.91142 0.91447 0.87912 0.87374 0.90845 0.89988 0.91230 0.91456 0.96236 0.87737 0.92181 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.27 11.86 21.84 0.26 -51.01 16 2 C 0.03 1.59 5.50 85.30 0.47 2.05 16 3 Si 1.00 41.10 29.56 68.60 2.03 43.13 16 4 H -0.24 -9.18 7.11 99.48 0.71 -8.47 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.57 -32.53 8.84 24.83 0.22 -32.31 16 8 H 0.09 4.76 5.73 -2.91 -0.02 4.75 16 9 C 0.54 32.33 7.61 86.36 0.66 32.99 16 10 O -0.63 -43.76 14.55 -4.32 -0.06 -43.82 16 11 N -0.65 -30.67 3.01 -823.02 -2.48 -33.15 16 12 C 0.12 5.06 6.58 86.35 0.57 5.63 16 13 C 0.06 1.86 5.62 86.38 0.49 2.35 16 14 N -0.53 -14.62 4.31 -895.26 -3.86 -18.48 16 15 C 0.06 1.32 4.35 86.30 0.38 1.70 16 16 C -0.08 -1.44 2.15 -10.65 -0.02 -1.46 16 17 H 0.07 1.35 6.19 -2.39 -0.01 1.34 16 18 C -0.07 -1.39 5.23 29.69 0.16 -1.24 16 19 C -0.16 -2.86 9.80 27.06 0.27 -2.59 16 20 C -0.17 -2.60 9.80 27.03 0.26 -2.33 16 21 C -0.09 -1.24 6.12 29.66 0.18 -1.06 16 22 C -0.11 -1.67 5.31 30.73 0.16 -1.51 16 23 C 0.05 1.52 5.46 86.38 0.47 2.00 16 24 C 0.12 4.67 6.52 86.35 0.56 5.23 16 25 H 0.27 15.36 8.29 -92.71 -0.77 14.60 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.49 7.11 -2.39 -0.02 2.48 16 28 H 0.10 2.63 7.99 -2.39 -0.02 2.61 16 29 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 1.60 7.93 -2.39 -0.02 1.58 16 31 H 0.03 0.66 8.12 -2.38 -0.02 0.64 16 32 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 33 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 34 H 0.10 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.10 2.57 6.08 -2.38 -0.01 2.55 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 3.32 5.38 -2.38 -0.01 3.30 16 Total: -1.00 -75.06 333.71 1.68 -73.38 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.98 Total: 20.51 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 4.82 Total: 9.44 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -6.08 Total: -102.64 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.06 Total: -43.82 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -75.06 1.68 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.986 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds