Wall clock time and date at job start Tue Mar 31 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48503 * 109.47228 * 274.99849 * 3 2 1 5 5 H 1.48500 * 109.47245 * 34.99716 * 3 2 1 6 6 H 1.48497 * 109.47018 * 154.99466 * 3 2 1 7 7 C 1.40039 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 174.83971 * 7 2 1 9 9 C 1.46375 * 119.99965 * 355.10639 * 7 2 1 10 10 O 1.21681 * 120.00225 * 5.28729 * 9 7 2 11 11 N 1.34777 * 119.99994 * 185.28260 * 9 7 2 12 12 C 1.47075 * 120.88191 * 354.73127 * 11 9 7 13 13 C 1.53701 * 108.27716 * 128.75245 * 12 11 9 14 14 N 1.46894 * 109.25680 * 54.08377 * 13 12 11 15 15 C 1.46900 * 111.00210 * 172.60782 * 14 13 12 16 16 C 1.53002 * 109.47539 * 200.27280 * 15 14 13 17 17 H 1.08998 * 109.63818 * 304.73671 * 16 15 14 18 18 C 1.53025 * 109.63881 * 65.15433 * 16 15 14 19 19 C 1.50070 * 110.14366 * 169.12611 * 18 16 15 20 20 C 1.29451 * 124.07527 * 342.86628 * 19 18 16 21 21 C 1.50064 * 124.07364 * 0.49244 * 20 19 18 22 22 C 1.53035 * 110.14438 * 342.83174 * 21 20 19 23 23 C 1.46901 * 111.27059 * 296.75708 * 14 13 12 24 24 C 1.47081 * 120.87981 * 175.00455 * 11 9 7 25 25 H 0.97005 * 120.00034 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.63240 * 248.51612 * 12 11 9 27 27 H 1.08998 * 109.62863 * 9.10078 * 12 11 9 28 28 H 1.09002 * 109.64962 * 294.07768 * 13 12 11 29 29 H 1.09003 * 109.44314 * 173.96225 * 13 12 11 30 30 H 1.08997 * 109.47042 * 320.27179 * 15 14 13 31 31 H 1.09000 * 109.47021 * 80.27298 * 15 14 13 32 32 H 1.09002 * 109.36041 * 289.32829 * 18 16 15 33 33 H 1.08996 * 109.36105 * 48.91936 * 18 16 15 34 34 H 1.08001 * 117.96126 * 162.85029 * 19 18 16 35 35 H 1.08001 * 117.96087 * 180.47750 * 20 19 18 36 36 H 1.09001 * 109.35501 * 103.05327 * 21 20 19 37 37 H 1.08995 * 109.35897 * 222.77490 * 21 20 19 38 38 H 1.09001 * 109.66200 * 289.78020 * 22 21 20 39 39 H 1.08998 * 109.63779 * 169.13282 * 22 21 20 40 40 H 1.09008 * 109.48908 * 303.14548 * 23 14 13 41 41 H 1.08996 * 109.51723 * 183.07826 * 23 14 13 42 42 H 1.08998 * 109.63011 * 350.90025 * 24 11 9 43 43 H 1.09000 * 109.62718 * 111.47947 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3825 2.1075 -1.3948 5 1 1.4949 2.6199 0.8030 6 1 3.5870 1.4121 0.5918 7 6 2.0069 -1.2128 -0.0005 8 1 3.0837 -1.2146 -0.0847 9 6 1.2791 -2.4782 0.1070 10 8 0.0623 -2.4827 0.1000 11 7 1.9567 -3.6383 0.2138 12 6 3.4234 -3.6683 0.1090 13 6 3.9779 -4.4310 1.3227 14 7 3.3344 -5.7491 1.4019 15 6 3.9590 -6.5784 2.4412 16 6 3.6436 -8.0519 2.1760 17 1 2.5645 -8.1891 2.1083 18 6 4.3012 -8.4909 0.8659 19 6 4.2270 -9.9831 0.7250 20 6 3.9809 -10.7928 1.7046 21 6 3.7250 -10.3516 3.1159 22 6 4.2069 -8.9127 3.3139 23 6 1.8882 -5.6234 1.6274 24 6 1.2485 -4.9088 0.4323 25 1 -0.4850 0.8401 0.0004 26 1 3.7145 -4.1762 -0.8105 27 1 3.8112 -2.6497 0.1066 28 1 3.7710 -3.8699 2.2340 29 1 5.0546 -4.5581 1.2104 30 1 5.0386 -6.4293 2.4248 31 1 3.5676 -6.2931 3.4177 32 1 3.7848 -8.0228 0.0278 33 1 5.3457 -8.1793 0.8636 34 1 4.3887 -10.4080 -0.2547 35 1 3.9581 -11.8516 1.4930 36 1 2.6564 -10.4068 3.3236 37 1 4.2607 -11.0074 3.8022 38 1 5.2963 -8.8842 3.2901 39 1 3.8483 -8.5347 4.2713 40 1 1.7104 -5.0456 2.5344 41 1 1.4490 -6.6151 1.7358 42 1 0.1977 -4.7106 0.6437 43 1 1.3345 -5.5335 -0.4568 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895065293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:58 Heat of formation + Delta-G solvation = -22.744727 kcal Electronic energy + Delta-G solvation = -22097.531060 eV Core-core repulsion = 18949.333616 eV Total energy + Delta-G solvation = -3148.197443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.36192 -38.21083 -36.37358 -33.66860 -32.51449 -31.34807 -30.73436 -30.59074 -27.27735 -26.03886 -24.16052 -23.07068 -22.91377 -20.93539 -20.46823 -18.74473 -17.94020 -16.64741 -16.13271 -15.74951 -14.94057 -14.83083 -14.58387 -14.28276 -14.11447 -13.90203 -13.72959 -13.36733 -13.08024 -12.76452 -12.48797 -12.37678 -12.08191 -11.85562 -11.54693 -11.35163 -11.17301 -11.04307 -10.90929 -10.77374 -10.65331 -10.45856 -10.22907 -10.19793 -10.19366 -9.89012 -9.04465 -8.85800 -8.09940 -7.57052 -7.15968 -6.20051 -4.64454 2.22602 3.12717 3.20066 3.23393 4.02138 4.11348 4.56627 4.60984 4.63848 4.65651 4.83551 5.13807 5.23227 5.27510 5.36130 5.40364 5.52774 5.58137 5.63402 5.68261 5.72194 5.76595 5.77482 5.86880 5.91384 5.92464 5.92487 6.06669 6.16307 6.23916 6.27866 6.40591 6.49150 6.56311 6.59521 6.74613 6.90534 7.32340 7.36037 7.45657 7.64000 8.14354 8.37698 9.01998 9.45944 10.57773 10.76610 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039883 B = 0.003516 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.887878 B = 7961.788432 C = 8194.853783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.128 3.872 13 C 0.042 3.958 14 N -0.534 5.534 15 C 0.059 3.941 16 C -0.080 4.080 17 H 0.072 0.928 18 C -0.077 4.077 19 C -0.147 4.147 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.116 4.116 23 C 0.045 3.955 24 C 0.126 3.874 25 H 0.268 0.732 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.659 -16.127 5.194 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.003 3.997 13 C -0.087 4.087 14 N -0.259 5.259 15 C -0.069 4.069 16 C -0.099 4.099 17 H 0.091 0.909 18 C -0.114 4.114 19 C -0.166 4.166 20 C -0.187 4.187 21 C -0.125 4.125 22 C -0.154 4.154 23 C -0.083 4.083 24 C 0.002 3.998 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.112 0.888 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.853 -16.225 4.731 19.563 hybrid contribution 0.457 1.007 0.765 1.345 sum 10.310 -15.217 5.496 19.185 Atomic orbital electron populations 1.70028 1.07090 1.27241 1.35282 1.25728 0.94589 1.00300 0.92600 0.86391 0.80283 0.81603 0.78703 1.19785 1.20430 1.18828 1.20968 0.93861 0.89390 1.53927 0.90936 1.18250 0.86883 0.82170 0.76186 1.90587 1.14097 1.85959 1.55558 1.48229 1.05181 1.06490 1.78361 1.21587 0.82476 1.00409 0.95225 1.22647 0.97924 0.88906 0.99180 1.61916 1.03461 1.14409 1.46071 1.22160 0.99098 0.92763 0.92873 1.21184 1.00509 0.93464 0.94752 0.90926 1.20380 1.00864 0.91730 0.98389 1.22221 0.99891 0.96161 0.98282 1.21988 1.02663 0.98936 0.95101 1.20405 1.01182 0.96371 0.94529 1.21643 1.00729 0.94667 0.98328 1.22540 0.87832 0.99653 0.98324 1.21184 0.97378 0.85915 0.95332 0.92129 0.93305 0.88758 0.94697 0.90963 0.91233 0.94959 0.89851 0.91260 0.88344 0.88525 0.91142 0.91486 0.91834 0.91896 0.94949 0.90939 0.89836 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.85 55.55 0.66 -22.40 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 19.99 29.56 -169.99 -5.03 14.97 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.54 -15.27 8.87 -35.64 -0.32 -15.58 16 8 H 0.07 1.84 5.68 -52.49 -0.30 1.55 16 9 C 0.56 16.07 7.63 -12.99 -0.10 15.97 16 10 O -0.58 -18.93 14.51 5.21 0.08 -18.86 16 11 N -0.64 -14.89 3.00 -173.84 -0.52 -15.41 16 12 C 0.13 2.41 6.55 -3.36 -0.02 2.39 16 13 C 0.04 0.66 5.60 -3.46 -0.02 0.64 16 14 N -0.53 -7.82 4.22 -234.02 -0.99 -8.81 16 15 C 0.06 0.71 4.40 -3.82 -0.02 0.69 16 16 C -0.08 -0.86 2.29 -90.40 -0.21 -1.06 16 17 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 18 C -0.08 -0.82 5.21 -28.17 -0.15 -0.97 16 19 C -0.15 -1.47 9.80 -35.90 -0.35 -1.82 16 20 C -0.17 -1.57 9.80 -35.90 -0.35 -1.93 16 21 C -0.09 -0.76 6.12 -28.17 -0.17 -0.93 16 22 C -0.12 -1.05 5.31 -26.51 -0.14 -1.19 16 23 C 0.05 0.74 5.44 -3.70 -0.02 0.72 16 24 C 0.13 2.55 6.58 -3.60 -0.02 2.52 16 25 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.84 5.37 -51.93 -0.28 1.56 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 30 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 31 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 32 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 33 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 1.04 6.64 -51.93 -0.35 0.69 16 42 H 0.08 1.87 7.09 -51.93 -0.37 1.50 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -33.04 334.35 -9.81 -42.86 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.06 Total: 0.84 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.98 Total: 1.78 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.85 Total: -46.62 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.04 -9.81 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.111 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds