Wall clock time and date at job start Tue Mar 31 2020 00:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48503 * 109.47228 * 274.99849 * 3 2 1 5 5 H 1.48500 * 109.47245 * 34.99716 * 3 2 1 6 6 H 1.48497 * 109.47018 * 154.99466 * 3 2 1 7 7 C 1.40039 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 174.83971 * 7 2 1 9 9 C 1.46375 * 119.99965 * 355.10639 * 7 2 1 10 10 O 1.21681 * 120.00225 * 5.28729 * 9 7 2 11 11 N 1.34777 * 119.99994 * 185.28260 * 9 7 2 12 12 C 1.47075 * 120.88191 * 354.73127 * 11 9 7 13 13 C 1.53701 * 108.27716 * 128.75245 * 12 11 9 14 14 N 1.46894 * 109.25680 * 54.08377 * 13 12 11 15 15 C 1.46900 * 111.00210 * 172.60782 * 14 13 12 16 16 C 1.53002 * 109.47539 * 200.27280 * 15 14 13 17 17 H 1.08998 * 109.63818 * 304.73671 * 16 15 14 18 18 C 1.53025 * 109.63881 * 65.15433 * 16 15 14 19 19 C 1.50070 * 110.14366 * 169.12611 * 18 16 15 20 20 C 1.29451 * 124.07527 * 342.86628 * 19 18 16 21 21 C 1.50064 * 124.07364 * 0.49244 * 20 19 18 22 22 C 1.53035 * 110.14438 * 342.83174 * 21 20 19 23 23 C 1.46901 * 111.27059 * 296.75708 * 14 13 12 24 24 C 1.47081 * 120.87981 * 175.00455 * 11 9 7 25 25 H 0.97005 * 120.00034 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.63240 * 248.51612 * 12 11 9 27 27 H 1.08998 * 109.62863 * 9.10078 * 12 11 9 28 28 H 1.09002 * 109.64962 * 294.07768 * 13 12 11 29 29 H 1.09003 * 109.44314 * 173.96225 * 13 12 11 30 30 H 1.08997 * 109.47042 * 320.27179 * 15 14 13 31 31 H 1.09000 * 109.47021 * 80.27298 * 15 14 13 32 32 H 1.09002 * 109.36041 * 289.32829 * 18 16 15 33 33 H 1.08996 * 109.36105 * 48.91936 * 18 16 15 34 34 H 1.08001 * 117.96126 * 162.85029 * 19 18 16 35 35 H 1.08001 * 117.96087 * 180.47750 * 20 19 18 36 36 H 1.09001 * 109.35501 * 103.05327 * 21 20 19 37 37 H 1.08995 * 109.35897 * 222.77490 * 21 20 19 38 38 H 1.09001 * 109.66200 * 289.78020 * 22 21 20 39 39 H 1.08998 * 109.63779 * 169.13282 * 22 21 20 40 40 H 1.09008 * 109.48908 * 303.14548 * 23 14 13 41 41 H 1.08996 * 109.51723 * 183.07826 * 23 14 13 42 42 H 1.08998 * 109.63011 * 350.90025 * 24 11 9 43 43 H 1.09000 * 109.62718 * 111.47947 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3825 2.1075 -1.3948 5 1 1.4949 2.6199 0.8030 6 1 3.5870 1.4121 0.5918 7 6 2.0069 -1.2128 -0.0005 8 1 3.0837 -1.2146 -0.0847 9 6 1.2791 -2.4782 0.1070 10 8 0.0623 -2.4827 0.1000 11 7 1.9567 -3.6383 0.2138 12 6 3.4234 -3.6683 0.1090 13 6 3.9779 -4.4310 1.3227 14 7 3.3344 -5.7491 1.4019 15 6 3.9590 -6.5784 2.4412 16 6 3.6436 -8.0519 2.1760 17 1 2.5645 -8.1891 2.1083 18 6 4.3012 -8.4909 0.8659 19 6 4.2270 -9.9831 0.7250 20 6 3.9809 -10.7928 1.7046 21 6 3.7250 -10.3516 3.1159 22 6 4.2069 -8.9127 3.3139 23 6 1.8882 -5.6234 1.6274 24 6 1.2485 -4.9088 0.4323 25 1 -0.4850 0.8401 0.0004 26 1 3.7145 -4.1762 -0.8105 27 1 3.8112 -2.6497 0.1066 28 1 3.7710 -3.8699 2.2340 29 1 5.0546 -4.5581 1.2104 30 1 5.0386 -6.4293 2.4248 31 1 3.5676 -6.2931 3.4177 32 1 3.7848 -8.0228 0.0278 33 1 5.3457 -8.1793 0.8636 34 1 4.3887 -10.4080 -0.2547 35 1 3.9581 -11.8516 1.4930 36 1 2.6564 -10.4068 3.3236 37 1 4.2607 -11.0074 3.8022 38 1 5.2963 -8.8842 3.2901 39 1 3.8483 -8.5347 4.2713 40 1 1.7104 -5.0456 2.5344 41 1 1.4490 -6.6151 1.7358 42 1 0.1977 -4.7106 0.6437 43 1 1.3345 -5.5335 -0.4568 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895065293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:57 Heat of formation + Delta-G solvation = -43.999992 kcal Electronic energy + Delta-G solvation = -22098.452757 eV Core-core repulsion = 18949.333616 eV Total energy + Delta-G solvation = -3149.119141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61897 -39.51566 -38.03592 -35.26562 -34.62745 -32.41066 -32.11522 -31.50185 -28.93835 -27.75618 -25.31859 -24.58424 -23.75438 -22.44813 -21.55468 -20.47824 -18.73967 -18.46141 -17.80647 -16.88655 -16.48196 -16.12403 -15.88259 -15.80104 -15.55974 -15.47133 -14.80422 -14.40605 -14.38907 -14.06131 -13.70446 -13.49496 -13.27966 -13.17979 -13.07779 -12.78881 -12.70668 -12.64440 -12.32482 -12.20300 -12.00324 -11.95692 -11.84890 -11.41241 -11.10676 -10.97177 -10.93201 -9.79089 -9.77226 -9.40586 -8.98901 -8.29740 -6.84184 1.39779 1.40995 1.50100 1.57007 2.23448 2.45385 2.74022 3.01404 3.59245 3.79629 3.89184 3.97702 4.09377 4.13922 4.30338 4.34053 4.38808 4.47039 4.51419 4.58088 4.65751 4.68466 4.74738 4.82014 4.83674 4.89137 4.94461 4.96695 5.01178 5.09536 5.18129 5.21448 5.32570 5.38813 5.42717 5.56270 5.74419 5.86772 6.05931 6.15303 6.16733 6.17539 6.41958 6.87428 7.43102 8.46126 8.66941 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039883 B = 0.003516 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.887878 B = 7961.788432 C = 8194.853783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.539 3.461 10 O -0.635 6.635 11 N -0.648 5.648 12 C 0.123 3.877 13 C 0.051 3.949 14 N -0.532 5.532 15 C 0.062 3.938 16 C -0.076 4.076 17 H 0.060 0.940 18 C -0.072 4.072 19 C -0.163 4.163 20 C -0.167 4.167 21 C -0.090 4.090 22 C -0.112 4.112 23 C 0.061 3.939 24 C 0.124 3.876 25 H 0.274 0.726 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.020 0.980 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.014 0.986 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.633 -16.825 5.950 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.168 1.168 7 C -0.605 4.605 8 H 0.113 0.887 9 C 0.345 3.655 10 O -0.523 6.523 11 N -0.384 5.384 12 C 0.000 4.000 13 C -0.077 4.077 14 N -0.256 5.256 15 C -0.065 4.065 16 C -0.095 4.095 17 H 0.078 0.922 18 C -0.109 4.109 19 C -0.181 4.181 20 C -0.185 4.185 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.068 4.068 24 C 0.000 4.000 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.038 0.962 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.115 0.885 42 H 0.069 0.931 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.888 -16.986 5.494 22.018 hybrid contribution -0.469 1.095 0.507 1.294 sum 12.419 -15.891 6.001 21.042 Atomic orbital electron populations 1.70210 1.09665 1.28876 1.36600 1.27030 0.95484 1.05058 0.91185 0.85025 0.79065 0.75108 0.79236 1.18679 1.19953 1.16780 1.21500 0.95132 0.89798 1.54032 0.88679 1.18709 0.86556 0.84176 0.76024 1.90532 1.16410 1.87275 1.58090 1.48131 1.07157 1.06026 1.77118 1.21789 0.79727 1.00906 0.97583 1.22559 0.99748 0.88750 0.96691 1.61916 1.02217 1.14074 1.47416 1.22239 0.99770 0.92772 0.91764 1.21132 0.99848 0.92893 0.95611 0.92173 1.20302 1.00810 0.92233 0.97596 1.22265 1.01121 0.95846 0.98902 1.22200 1.01445 0.99532 0.95312 1.20460 1.01472 0.96333 0.94439 1.21618 1.01011 0.94583 0.97759 1.22313 0.89250 0.99897 0.95328 1.21270 0.95934 0.85221 0.97530 0.91659 0.91945 0.89536 0.96172 0.87286 0.89484 0.95030 0.91620 0.90826 0.87903 0.87415 0.91069 0.89932 0.91222 0.91301 0.96756 0.88547 0.93068 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.23 11.85 21.83 0.26 -50.97 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 40.93 29.56 68.60 2.03 42.96 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.24 -9.19 7.11 99.48 0.71 -8.49 16 7 C -0.57 -32.37 8.87 24.83 0.22 -32.15 16 8 H 0.10 4.79 5.68 -2.91 -0.02 4.78 16 9 C 0.54 32.22 7.63 86.36 0.66 32.87 16 10 O -0.64 -43.94 14.51 -4.29 -0.06 -44.01 16 11 N -0.65 -30.64 3.00 -822.14 -2.47 -33.11 16 12 C 0.12 4.54 6.55 86.51 0.57 5.10 16 13 C 0.05 1.50 5.60 86.54 0.48 1.98 16 14 N -0.53 -14.60 4.22 -894.30 -3.78 -18.38 16 15 C 0.06 1.31 4.40 86.30 0.38 1.69 16 16 C -0.08 -1.45 2.29 -10.65 -0.02 -1.47 16 17 H 0.06 1.31 6.70 -2.39 -0.02 1.29 16 18 C -0.07 -1.40 5.21 29.66 0.15 -1.25 16 19 C -0.16 -2.94 9.80 27.03 0.27 -2.68 16 20 C -0.17 -2.71 9.80 27.03 0.26 -2.45 16 21 C -0.09 -1.31 6.12 29.66 0.18 -1.12 16 22 C -0.11 -1.71 5.31 30.74 0.16 -1.55 16 23 C 0.06 1.98 5.44 86.38 0.47 2.45 16 24 C 0.12 5.16 6.58 86.35 0.57 5.73 16 25 H 0.27 15.38 8.29 -92.70 -0.77 14.62 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 3.30 5.37 -2.39 -0.01 3.29 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 2.44 7.90 -2.39 -0.02 2.42 16 30 H 0.09 1.59 7.73 -2.39 -0.02 1.57 16 31 H 0.03 0.70 8.00 -2.39 -0.02 0.68 16 32 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.07 1.34 8.07 -2.39 -0.02 1.33 16 34 H 0.10 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.11 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 41 H 0.10 2.67 6.64 -2.39 -0.02 2.65 16 42 H 0.05 2.44 7.09 -2.39 -0.02 2.42 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -75.31 334.35 1.78 -73.53 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.98 Total: 20.80 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.82 Total: 9.17 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -5.99 Total: -102.45 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.06 Total: -44.01 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -75.31 1.78 -73.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -75.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds