Wall clock time and date at job start Tue Mar 31 2020 00:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99630 * 2 1 4 4 H 1.48500 * 109.47358 * 275.37001 * 3 2 1 5 5 H 1.48498 * 109.47689 * 35.37615 * 3 2 1 6 6 H 1.48504 * 109.46858 * 155.37344 * 3 2 1 7 7 C 1.38810 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99763 * 35.24560 * 7 2 1 9 9 N 1.36940 * 119.99877 * 215.24440 * 7 2 1 10 10 C 1.46966 * 120.59007 * 207.33863 * 9 7 2 11 11 C 1.53365 * 108.63183 * 235.24631 * 10 9 7 12 12 N 1.46962 * 108.63750 * 310.57765 * 11 10 9 13 13 C 1.34780 * 120.59459 * 235.20381 * 12 11 10 14 14 O 1.21277 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99913 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.47226 * 180.02562 * 15 13 12 17 17 H 1.08995 * 109.81607 * 54.46805 * 16 15 13 18 18 C 1.53446 * 109.94004 * 293.85245 * 16 15 13 19 19 C 1.50070 * 110.26805 * 190.99680 * 18 16 15 20 20 C 1.29443 * 124.07301 * 17.12132 * 19 18 16 21 21 C 1.50069 * 124.07905 * 359.50903 * 20 19 18 22 22 C 1.53027 * 110.14335 * 17.13499 * 21 20 19 23 23 C 1.46963 * 118.81006 * 55.48213 * 12 11 10 24 24 C 1.46965 * 120.59325 * 27.36349 * 9 7 2 25 25 H 0.97001 * 119.99974 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.60604 * 115.50575 * 10 9 7 27 27 H 1.08994 * 109.61343 * 354.99517 * 10 9 7 28 28 H 1.09006 * 109.61138 * 190.83313 * 11 10 9 29 29 H 1.09004 * 109.75331 * 70.41034 * 11 10 9 30 30 H 1.09004 * 109.47562 * 59.99713 * 15 13 12 31 31 H 1.08997 * 109.47321 * 300.00283 * 15 13 12 32 32 H 1.08995 * 109.32623 * 70.73328 * 18 16 15 33 33 H 1.09003 * 109.27576 * 311.21910 * 18 16 15 34 34 H 1.07998 * 117.96270 * 197.10005 * 19 18 16 35 35 H 1.08002 * 117.96247 * 179.53497 * 20 19 18 36 36 H 1.08997 * 109.35950 * 256.93069 * 21 20 19 37 37 H 1.09003 * 109.35577 * 137.33584 * 21 20 19 38 38 H 1.08997 * 109.64294 * 70.24532 * 22 21 20 39 39 H 1.09007 * 109.63984 * 190.67037 * 22 21 20 40 40 H 1.09002 * 109.61329 * 64.26736 * 23 12 11 41 41 H 1.09005 * 109.61033 * 184.77643 * 23 12 11 42 42 H 1.08996 * 109.60493 * 244.49577 * 24 9 7 43 43 H 1.08993 * 109.60952 * 5.00490 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3841 2.1120 -1.3939 5 1 1.5090 2.6173 0.8105 6 1 3.5998 1.4101 0.5834 7 6 2.0103 -1.2021 -0.0005 8 1 1.6188 -2.0514 -0.5407 9 7 3.1914 -1.3111 0.6838 10 6 4.2161 -2.2749 0.2584 11 6 4.5598 -3.1812 1.4469 12 7 4.8252 -2.3368 2.6201 13 6 5.9874 -2.4447 3.2941 14 8 6.8252 -3.2443 2.9342 15 6 6.2453 -1.5725 4.4957 16 6 7.6265 -1.8922 5.0709 17 1 8.3822 -1.7991 4.2910 18 6 7.6416 -3.3200 5.6330 19 6 8.8908 -3.5509 6.4319 20 6 9.6511 -2.6036 6.8793 21 6 9.3953 -1.1423 6.6528 22 6 7.9452 -0.9227 6.2161 23 6 3.7982 -1.3770 3.0488 24 6 3.4568 -0.4667 1.8570 25 1 -0.4850 0.8401 0.0004 26 1 5.1095 -1.7403 -0.0644 27 1 3.8315 -2.8790 -0.5632 28 1 5.4460 -3.7712 1.2128 29 1 3.7224 -3.8467 1.6570 30 1 5.4836 -1.7616 5.2521 31 1 6.2096 -0.5245 4.1983 32 1 7.6027 -4.0324 4.8091 33 1 6.7715 -3.4637 6.2736 34 1 9.1729 -4.5710 6.6472 35 1 10.5240 -2.8822 7.4509 36 1 10.0660 -0.7742 5.8765 37 1 9.5809 -0.5955 7.5773 38 1 7.2767 -1.1145 7.0554 39 1 7.8174 0.1041 5.8731 40 1 2.9059 -1.9148 3.3693 41 1 4.1812 -0.7751 3.8729 42 1 4.2961 0.1966 1.6480 43 1 2.5706 0.1232 2.0911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:39 Heat of formation + Delta-G solvation = 0.509910 kcal Electronic energy + Delta-G solvation = -22288.957230 eV Core-core repulsion = 19141.768183 eV Total energy + Delta-G solvation = -3147.189047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06792 -38.43047 -36.91286 -33.94623 -32.92730 -31.59020 -30.86563 -30.62463 -27.95399 -26.56275 -23.66764 -23.23337 -23.13595 -21.58886 -20.38353 -18.61798 -18.05622 -17.14142 -16.30695 -15.96555 -15.64047 -15.31344 -14.72163 -14.38804 -14.25954 -13.92685 -13.82774 -13.49196 -13.05921 -12.84602 -12.75941 -12.42374 -12.38346 -12.19858 -12.11966 -11.83449 -11.59561 -11.05142 -10.84298 -10.76596 -10.59912 -10.48349 -10.34164 -10.22548 -10.17591 -9.50294 -9.37136 -9.03159 -8.74060 -8.22977 -7.03266 -6.12024 -3.34002 2.21911 2.91190 3.29812 3.35190 3.45032 3.50043 4.48332 4.55354 4.56192 4.67082 4.82896 4.95132 5.09106 5.15366 5.23659 5.26142 5.40102 5.49098 5.53921 5.60096 5.61302 5.67242 5.72330 5.76544 5.80838 5.87160 5.90513 6.05939 6.06070 6.10650 6.23507 6.25576 6.36651 6.48343 6.55864 6.58084 6.73027 6.88397 6.94532 7.78832 7.85560 8.21987 8.48349 8.85067 9.63135 10.03104 11.02549 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.004052 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.853249 B = 6908.925933 C = 7430.392743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.038 3.962 3 Si 0.837 3.163 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.274 4.274 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.133 3.867 11 C 0.095 3.905 12 N -0.601 5.601 13 C 0.510 3.490 14 O -0.554 6.554 15 C -0.136 4.136 16 C -0.069 4.069 17 H 0.079 0.921 18 C -0.092 4.092 19 C -0.144 4.144 20 C -0.168 4.168 21 C -0.088 4.088 22 C -0.117 4.117 23 C 0.085 3.915 24 C 0.131 3.869 25 H 0.263 0.737 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.498 -2.562 13.483 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.163 4.163 3 Si 0.664 3.336 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.402 4.402 8 H 0.100 0.900 9 N -0.324 5.324 10 C 0.006 3.994 11 C -0.028 4.028 12 N -0.333 5.333 13 C 0.299 3.701 14 O -0.433 6.433 15 C -0.176 4.176 16 C -0.088 4.088 17 H 0.098 0.902 18 C -0.129 4.129 19 C -0.162 4.162 20 C -0.187 4.187 21 C -0.125 4.125 22 C -0.155 4.155 23 C -0.040 4.040 24 C 0.004 3.996 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.733 -2.908 13.261 20.034 hybrid contribution 0.259 1.094 -0.098 1.129 sum 14.992 -1.814 13.163 20.033 Atomic orbital electron populations 1.70084 1.06176 1.26927 1.49014 1.25238 0.94842 0.97476 0.98744 0.87603 0.82052 0.85856 0.78112 1.21976 1.22011 1.18051 1.18789 0.94795 0.96579 1.29994 0.89993 1.44283 1.16580 1.42994 1.28520 1.21344 0.91866 0.91818 0.94349 1.22178 1.01002 0.93484 0.86184 1.48074 1.16608 1.39060 1.29554 1.20619 0.81285 0.83795 0.84426 1.90611 1.45005 1.38742 1.68946 1.21766 0.98957 1.00506 0.96360 1.21009 0.95792 0.94902 0.97089 0.90211 1.20693 0.95434 0.97550 0.99205 1.22117 0.97022 0.98586 0.98449 1.21993 1.00025 0.94996 1.01641 1.20406 0.96904 0.94024 1.01177 1.21689 0.96374 0.99160 0.98244 1.22604 0.90951 0.91916 0.98500 1.21814 0.99418 0.92198 0.86161 0.92689 0.95640 0.90776 0.89755 0.91661 0.89067 0.88905 0.89100 0.91499 0.88301 0.88419 0.91068 0.91330 0.91724 0.91592 0.90950 0.90642 0.94875 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.97 55.49 0.78 -25.05 16 2 C 0.04 1.06 4.85 -17.43 -0.08 0.97 16 3 Si 0.84 20.41 26.43 -169.99 -4.49 15.92 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -5.89 4.82 56.52 0.27 -5.61 16 7 C -0.27 -7.34 9.86 -15.06 -0.15 -7.48 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 N -0.60 -13.68 2.70 -171.78 -0.46 -14.15 16 10 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16 11 C 0.10 1.66 6.59 -3.60 -0.02 1.63 16 12 N -0.60 -10.01 2.94 -172.22 -0.51 -10.52 16 13 C 0.51 8.02 7.47 -10.99 -0.08 7.94 16 14 O -0.55 -10.07 13.53 5.56 0.08 -10.00 16 15 C -0.14 -1.61 3.53 -27.89 -0.10 -1.71 16 16 C -0.07 -0.79 1.88 -90.18 -0.17 -0.96 16 17 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 18 C -0.09 -1.08 5.08 -27.96 -0.14 -1.22 16 19 C -0.14 -1.53 9.81 -35.90 -0.35 -1.88 16 20 C -0.17 -1.63 9.80 -35.90 -0.35 -1.99 16 21 C -0.09 -0.78 6.12 -28.17 -0.17 -0.95 16 22 C -0.12 -1.08 5.29 -26.51 -0.14 -1.22 16 23 C 0.08 1.37 6.53 -3.37 -0.02 1.35 16 24 C 0.13 2.65 4.53 -3.37 -0.02 2.63 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 28 H 0.08 1.43 6.99 -51.93 -0.36 1.07 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 31 H 0.09 1.01 7.73 -51.93 -0.40 0.61 16 32 H 0.09 1.27 6.34 -51.93 -0.33 0.94 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.96 5.91 -51.93 -0.31 0.66 16 42 H 0.03 0.68 6.69 -51.93 -0.35 0.33 16 43 H 0.08 1.65 5.59 -51.93 -0.29 1.36 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -30.44 327.14 -8.69 -39.13 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.18 Total: 0.04 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.83 Total: -0.31 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.19 Total: -49.71 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.49 Total: 15.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.44 -8.69 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.644 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds