Wall clock time and date at job start Tue Mar 31 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99630 * 2 1 4 4 H 1.48500 * 109.47358 * 275.37001 * 3 2 1 5 5 H 1.48498 * 109.47689 * 35.37615 * 3 2 1 6 6 H 1.48504 * 109.46858 * 155.37344 * 3 2 1 7 7 C 1.38810 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99763 * 35.24560 * 7 2 1 9 9 N 1.36940 * 119.99877 * 215.24440 * 7 2 1 10 10 C 1.46966 * 120.59007 * 207.33863 * 9 7 2 11 11 C 1.53365 * 108.63183 * 235.24631 * 10 9 7 12 12 N 1.46962 * 108.63750 * 310.57765 * 11 10 9 13 13 C 1.34780 * 120.59459 * 235.20381 * 12 11 10 14 14 O 1.21277 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99913 * 180.02562 * 13 12 11 16 16 C 1.53000 * 109.47226 * 180.02562 * 15 13 12 17 17 H 1.08995 * 109.81607 * 54.46805 * 16 15 13 18 18 C 1.53446 * 109.94004 * 293.85245 * 16 15 13 19 19 C 1.50070 * 110.26805 * 190.99680 * 18 16 15 20 20 C 1.29443 * 124.07301 * 17.12132 * 19 18 16 21 21 C 1.50069 * 124.07905 * 359.50903 * 20 19 18 22 22 C 1.53027 * 110.14335 * 17.13499 * 21 20 19 23 23 C 1.46963 * 118.81006 * 55.48213 * 12 11 10 24 24 C 1.46965 * 120.59325 * 27.36349 * 9 7 2 25 25 H 0.97001 * 119.99974 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.60604 * 115.50575 * 10 9 7 27 27 H 1.08994 * 109.61343 * 354.99517 * 10 9 7 28 28 H 1.09006 * 109.61138 * 190.83313 * 11 10 9 29 29 H 1.09004 * 109.75331 * 70.41034 * 11 10 9 30 30 H 1.09004 * 109.47562 * 59.99713 * 15 13 12 31 31 H 1.08997 * 109.47321 * 300.00283 * 15 13 12 32 32 H 1.08995 * 109.32623 * 70.73328 * 18 16 15 33 33 H 1.09003 * 109.27576 * 311.21910 * 18 16 15 34 34 H 1.07998 * 117.96270 * 197.10005 * 19 18 16 35 35 H 1.08002 * 117.96247 * 179.53497 * 20 19 18 36 36 H 1.08997 * 109.35950 * 256.93069 * 21 20 19 37 37 H 1.09003 * 109.35577 * 137.33584 * 21 20 19 38 38 H 1.08997 * 109.64294 * 70.24532 * 22 21 20 39 39 H 1.09007 * 109.63984 * 190.67037 * 22 21 20 40 40 H 1.09002 * 109.61329 * 64.26736 * 23 12 11 41 41 H 1.09005 * 109.61033 * 184.77643 * 23 12 11 42 42 H 1.08996 * 109.60493 * 244.49577 * 24 9 7 43 43 H 1.08993 * 109.60952 * 5.00490 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3841 2.1120 -1.3939 5 1 1.5090 2.6173 0.8105 6 1 3.5998 1.4101 0.5834 7 6 2.0103 -1.2021 -0.0005 8 1 1.6188 -2.0514 -0.5407 9 7 3.1914 -1.3111 0.6838 10 6 4.2161 -2.2749 0.2584 11 6 4.5598 -3.1812 1.4469 12 7 4.8252 -2.3368 2.6201 13 6 5.9874 -2.4447 3.2941 14 8 6.8252 -3.2443 2.9342 15 6 6.2453 -1.5725 4.4957 16 6 7.6265 -1.8922 5.0709 17 1 8.3822 -1.7991 4.2910 18 6 7.6416 -3.3200 5.6330 19 6 8.8908 -3.5509 6.4319 20 6 9.6511 -2.6036 6.8793 21 6 9.3953 -1.1423 6.6528 22 6 7.9452 -0.9227 6.2161 23 6 3.7982 -1.3770 3.0488 24 6 3.4568 -0.4667 1.8570 25 1 -0.4850 0.8401 0.0004 26 1 5.1095 -1.7403 -0.0644 27 1 3.8315 -2.8790 -0.5632 28 1 5.4460 -3.7712 1.2128 29 1 3.7224 -3.8467 1.6570 30 1 5.4836 -1.7616 5.2521 31 1 6.2096 -0.5245 4.1983 32 1 7.6027 -4.0324 4.8091 33 1 6.7715 -3.4637 6.2736 34 1 9.1729 -4.5710 6.6472 35 1 10.5240 -2.8822 7.4509 36 1 10.0660 -0.7742 5.8765 37 1 9.5809 -0.5955 7.5773 38 1 7.2767 -1.1145 7.0554 39 1 7.8174 0.1041 5.8731 40 1 2.9059 -1.9148 3.3693 41 1 4.1812 -0.7751 3.8729 42 1 4.2961 0.1966 1.6480 43 1 2.5706 0.1232 2.0911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:38 Heat of formation + Delta-G solvation = -16.862609 kcal Electronic energy + Delta-G solvation = -22289.710559 eV Core-core repulsion = 19141.768183 eV Total energy + Delta-G solvation = -3147.942376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27839 -39.43215 -38.33283 -35.59546 -33.96724 -33.38461 -32.15398 -31.55251 -29.29387 -27.89678 -25.24283 -24.74197 -24.02798 -22.74653 -21.67311 -20.05134 -18.91805 -18.63582 -17.78727 -17.06593 -16.91784 -16.53725 -16.35059 -16.00143 -15.34446 -15.24754 -14.92837 -14.79841 -14.46329 -14.16295 -14.00865 -13.82156 -13.59532 -13.37550 -13.14488 -12.89393 -12.75029 -12.54171 -12.41092 -12.22556 -12.09985 -11.86218 -11.59756 -11.42445 -11.36493 -10.98168 -10.68321 -10.57947 -9.85343 -9.77395 -8.85872 -8.22622 -5.41739 1.36264 1.45658 1.48607 1.54571 1.69865 2.05726 2.45086 2.95315 3.38315 3.55244 3.74881 3.84705 4.08292 4.13704 4.18503 4.29127 4.35632 4.42027 4.44753 4.51569 4.57634 4.59848 4.65950 4.76296 4.78826 4.80334 4.84030 4.87502 4.97901 5.02451 5.08103 5.13675 5.18924 5.26588 5.40691 5.52828 5.56424 5.82783 5.85588 6.10673 6.12344 6.53409 6.90096 7.23990 7.61693 8.04122 8.95635 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.004052 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.853249 B = 6908.925933 C = 7430.392743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.902 3.098 4 H -0.306 1.306 5 H -0.291 1.291 6 H -0.231 1.231 7 C -0.266 4.266 8 H 0.048 0.952 9 N -0.614 5.614 10 C 0.133 3.867 11 C 0.104 3.896 12 N -0.607 5.607 13 C 0.508 3.492 14 O -0.581 6.581 15 C -0.131 4.131 16 C -0.066 4.066 17 H 0.057 0.943 18 C -0.090 4.090 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.092 4.092 22 C -0.112 4.112 23 C 0.096 3.904 24 C 0.124 3.876 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.039 0.961 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.430 -1.127 15.817 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.210 4.210 3 Si 0.729 3.271 4 H -0.235 1.235 5 H -0.218 1.218 6 H -0.155 1.155 7 C -0.395 4.395 8 H 0.066 0.934 9 N -0.338 5.338 10 C 0.008 3.992 11 C -0.020 4.020 12 N -0.339 5.339 13 C 0.298 3.702 14 O -0.462 6.462 15 C -0.170 4.170 16 C -0.085 4.085 17 H 0.076 0.924 18 C -0.126 4.126 19 C -0.184 4.184 20 C -0.180 4.180 21 C -0.129 4.129 22 C -0.150 4.150 23 C -0.028 4.028 24 C -0.002 4.002 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.057 0.943 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.714 -1.475 15.624 22.927 hybrid contribution -0.291 0.529 -0.847 1.040 sum 16.423 -0.946 14.778 22.113 Atomic orbital electron populations 1.70168 1.07775 1.27597 1.51834 1.25746 0.95291 1.00464 0.99485 0.86571 0.81855 0.81449 0.77219 1.23473 1.21786 1.15468 1.18700 0.95888 0.95540 1.29380 0.93423 1.44397 1.16129 1.43880 1.29404 1.21401 0.90972 0.91495 0.95379 1.21938 1.00961 0.93103 0.85993 1.48167 1.17235 1.39100 1.29437 1.21352 0.80198 0.83634 0.84978 1.90613 1.45730 1.40031 1.69834 1.21851 0.99821 1.00461 0.94908 1.20962 0.94973 0.95300 0.97302 0.92435 1.20607 0.96392 0.97222 0.98423 1.22153 0.97357 0.99257 0.99586 1.22250 0.99785 0.95455 1.00552 1.20495 0.96786 0.93491 1.02145 1.21674 0.96719 0.99126 0.97457 1.22486 0.91102 0.91436 0.97734 1.21901 0.98916 0.92730 0.86655 0.92751 0.95363 0.91134 0.89403 0.91977 0.86701 0.86944 0.92090 0.90893 0.88032 0.87102 0.90960 0.89440 0.90850 0.90177 0.91392 0.86204 0.94275 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.97 21.65 0.30 -55.42 16 2 C -0.01 -0.67 4.85 84.86 0.41 -0.26 16 3 Si 0.90 42.26 26.43 68.60 1.81 44.07 16 4 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.23 -9.78 4.82 99.48 0.48 -9.30 16 7 C -0.27 -14.47 9.86 84.03 0.83 -13.64 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 N -0.61 -27.57 2.70 -697.38 -1.88 -29.45 16 10 C 0.13 5.14 6.67 86.41 0.58 5.72 16 11 C 0.10 3.54 6.59 86.41 0.57 4.11 16 12 N -0.61 -18.87 2.94 -817.17 -2.40 -21.28 16 13 C 0.51 14.81 7.47 87.65 0.65 15.47 16 14 O -0.58 -20.59 13.53 -3.02 -0.04 -20.63 16 15 C -0.13 -2.62 3.53 29.85 0.11 -2.51 16 16 C -0.07 -1.35 1.88 -10.51 -0.02 -1.37 16 17 H 0.06 1.43 7.93 -2.39 -0.02 1.41 16 18 C -0.09 -1.98 5.08 29.80 0.15 -1.83 16 19 C -0.17 -3.28 9.81 27.04 0.27 -3.02 16 20 C -0.16 -2.76 9.80 27.04 0.27 -2.49 16 21 C -0.09 -1.33 6.12 29.66 0.18 -1.15 16 22 C -0.11 -1.66 5.29 30.74 0.16 -1.49 16 23 C 0.10 2.82 6.53 86.56 0.57 3.39 16 24 C 0.12 4.72 4.53 86.56 0.39 5.11 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 28 H 0.09 2.93 6.99 -2.38 -0.02 2.91 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.11 1.81 7.87 -2.39 -0.02 1.79 16 31 H 0.11 1.87 7.73 -2.39 -0.02 1.86 16 32 H 0.06 1.71 6.34 -2.39 -0.02 1.69 16 33 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.10 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.11 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.12 2.46 5.91 -2.38 -0.01 2.45 16 42 H 0.04 1.46 6.69 -2.39 -0.02 1.45 16 43 H 0.06 2.57 5.59 -2.39 -0.01 2.56 16 Total: -1.00 -66.84 327.14 3.65 -63.20 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.75 Total: 13.48 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.11 Total: 6.03 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.98 Total: -106.15 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.81 Total: 44.07 kcal Total: -66.84 3.65 -63.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.334 kcal (2) G-P(sol) polarization free energy of solvation -66.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds