Wall clock time and date at job start Tue Mar 31 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47217 * 239.72605 * 3 2 1 5 5 H 1.48509 * 109.46989 * 359.72416 * 3 2 1 6 6 H 1.48499 * 109.47361 * 119.72391 * 3 2 1 7 7 C 1.38812 * 119.99800 * 179.71900 * 2 1 3 8 8 H 1.08003 * 119.99656 * 155.17923 * 7 2 1 9 9 N 1.36936 * 120.00503 * 335.18772 * 7 2 1 10 10 C 1.46963 * 120.59925 * 151.60530 * 9 7 2 11 11 C 1.53800 * 108.39652 * 124.75862 * 10 9 7 12 12 N 1.46963 * 108.58502 * 49.64027 * 11 10 9 13 13 C 1.34777 * 120.59616 * 124.61948 * 12 11 10 14 14 O 1.21280 * 119.99563 * 180.02562 * 13 12 11 15 15 C 1.50695 * 120.00184 * 0.02826 * 13 12 11 16 16 C 1.53002 * 109.47267 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.63711 * 304.57700 * 16 15 13 18 18 C 1.53021 * 109.64140 * 64.99760 * 16 15 13 19 19 C 1.50063 * 110.14646 * 169.11959 * 18 16 15 20 20 C 1.29439 * 124.07663 * 342.87152 * 19 18 16 21 21 C 1.50072 * 124.07809 * 0.49167 * 20 19 18 22 22 C 1.53037 * 110.13499 * 342.82770 * 21 20 19 23 23 C 1.46964 * 118.80694 * 304.64683 * 12 11 10 24 24 C 1.46970 * 120.58764 * 331.88596 * 9 7 2 25 25 H 0.96992 * 120.00285 * 174.26591 * 1 2 3 26 26 H 1.09005 * 109.60644 * 244.54168 * 10 9 7 27 27 H 1.09005 * 109.60393 * 5.04755 * 10 9 7 28 28 H 1.09003 * 109.74543 * 289.84461 * 11 10 9 29 29 H 1.09006 * 109.53062 * 169.30670 * 11 10 9 30 30 H 1.09002 * 109.46764 * 299.99820 * 15 13 12 31 31 H 1.09003 * 109.46958 * 59.99810 * 15 13 12 32 32 H 1.08996 * 109.35882 * 289.33047 * 18 16 15 33 33 H 1.09000 * 109.35735 * 49.05003 * 18 16 15 34 34 H 1.08003 * 117.96617 * 162.88915 * 19 18 16 35 35 H 1.08001 * 117.96512 * 180.46788 * 20 19 18 36 36 H 1.09001 * 109.36033 * 103.04703 * 21 20 19 37 37 H 1.09002 * 109.35670 * 222.77844 * 21 20 19 38 38 H 1.08993 * 109.66361 * 289.78135 * 22 21 20 39 39 H 1.09001 * 109.63900 * 169.14056 * 22 21 20 40 40 H 1.08997 * 109.61364 * 295.47513 * 23 12 11 41 41 H 1.09009 * 109.74903 * 175.05163 * 23 12 11 42 42 H 1.09000 * 109.60988 * 354.94848 * 24 9 7 43 43 H 1.09006 * 109.60764 * 115.28670 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1090 1.6934 -1.2091 5 1 1.2852 2.7465 -0.0067 6 1 3.0989 1.6993 1.2158 7 6 2.0102 -1.2022 0.0059 8 1 3.0154 -1.2473 -0.3865 9 7 1.4204 -2.3309 0.5091 10 6 1.7988 -3.6596 0.0079 11 6 2.2350 -4.5232 1.2035 12 7 1.2078 -4.4272 2.2501 13 6 0.6266 -5.5381 2.7447 14 8 -0.2202 -5.4462 3.6080 15 6 1.0290 -6.8942 2.2251 16 6 0.2249 -7.9766 2.9482 17 1 0.3591 -7.8747 4.0251 18 6 -1.2582 -7.8352 2.5989 19 6 -2.0193 -9.0355 3.0806 20 6 -1.4686 -10.1606 3.4066 21 6 0.0090 -10.4187 3.3586 22 6 0.7005 -9.3624 2.4937 23 6 0.8254 -3.0982 2.7473 24 6 0.3931 -2.2348 1.5557 25 1 -0.4850 -0.8357 -0.0839 26 1 0.9442 -4.1207 -0.4875 27 1 2.6249 -3.5631 -0.6966 28 1 3.1873 -4.1612 1.5912 29 1 2.3374 -5.5608 0.8854 30 1 0.8296 -6.9470 1.1548 31 1 2.0926 -7.0512 2.4048 32 1 -1.6575 -6.9394 3.0744 33 1 -1.3682 -7.7500 1.5179 34 1 -3.0934 -8.9558 3.1599 35 1 -2.1125 -10.9636 3.7339 36 1 0.4154 -10.3811 4.3693 37 1 0.1897 -11.4058 2.9329 38 1 0.4368 -9.5152 1.4472 39 1 1.7808 -9.4377 2.6172 40 1 1.6772 -2.6347 3.2450 41 1 -0.0023 -3.1921 3.4504 42 1 0.2907 -1.1973 1.8737 43 1 -0.5599 -2.5940 1.1671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:42 Heat of formation + Delta-G solvation = -9.948811 kcal Electronic energy + Delta-G solvation = -22278.052469 eV Core-core repulsion = 19130.409898 eV Total energy + Delta-G solvation = -3147.642571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.04265 -38.40469 -36.86560 -34.14376 -32.87344 -31.17704 -30.82813 -30.42252 -27.65985 -26.36122 -23.65932 -23.23279 -22.91014 -21.49518 -20.22295 -18.60422 -18.03825 -17.41773 -16.47776 -15.99963 -15.52579 -15.15093 -14.42490 -14.39970 -13.92674 -13.84072 -13.59348 -13.49355 -13.33526 -12.97311 -12.77216 -12.51892 -12.37420 -12.10105 -11.87396 -11.60030 -11.07874 -10.86745 -10.77594 -10.75282 -10.56129 -10.46145 -10.40302 -10.19252 -10.06040 -9.44994 -9.30557 -8.99417 -8.57886 -8.25617 -6.94182 -6.13435 -3.33473 2.25431 2.94774 3.37703 3.45814 3.49437 3.67441 4.52408 4.57100 4.58677 4.69541 4.96441 5.06531 5.10643 5.20043 5.28474 5.32543 5.42680 5.50776 5.58894 5.62026 5.64397 5.70217 5.72989 5.75146 5.79774 5.89101 5.98984 6.09532 6.18330 6.24343 6.29050 6.33925 6.38360 6.53775 6.61183 6.70445 6.92481 6.95245 7.12450 7.84899 7.90582 8.48035 8.53103 9.00234 9.74500 10.18016 11.13265 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043675 B = 0.003591 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.947743 B = 7794.767786 C = 8011.349187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.023 4.023 3 Si 1.066 2.934 4 H -0.292 1.292 5 H -0.285 1.285 6 H -0.292 1.292 7 C -0.355 4.355 8 H 0.058 0.942 9 N -0.598 5.598 10 C 0.132 3.868 11 C 0.089 3.911 12 N -0.600 5.600 13 C 0.508 3.492 14 O -0.552 6.552 15 C -0.135 4.135 16 C -0.069 4.069 17 H 0.079 0.921 18 C -0.095 4.095 19 C -0.141 4.141 20 C -0.171 4.171 21 C -0.087 4.087 22 C -0.116 4.116 23 C 0.093 3.907 24 C 0.138 3.862 25 H 0.269 0.731 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -17.966 4.398 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.225 4.225 3 Si 0.895 3.105 4 H -0.219 1.219 5 H -0.210 1.210 6 H -0.220 1.220 7 C -0.484 4.484 8 H 0.076 0.924 9 N -0.322 5.322 10 C 0.005 3.995 11 C -0.036 4.036 12 N -0.332 5.332 13 C 0.297 3.703 14 O -0.432 6.432 15 C -0.175 4.175 16 C -0.088 4.088 17 H 0.097 0.903 18 C -0.131 4.131 19 C -0.159 4.159 20 C -0.189 4.189 21 C -0.124 4.124 22 C -0.154 4.154 23 C -0.031 4.031 24 C 0.011 3.989 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.696 -16.214 4.893 17.021 hybrid contribution 0.212 -1.707 -0.246 1.737 sum 1.907 -17.920 4.647 18.611 Atomic orbital electron populations 1.70790 1.06641 1.30389 1.47353 1.25912 0.96501 1.01623 0.98470 0.83517 0.74795 0.75949 0.76233 1.21932 1.21037 1.21958 1.19976 0.97440 0.88469 1.42498 0.92426 1.44081 1.46409 1.01276 1.40478 1.21364 0.98170 0.87041 0.92911 1.22445 0.90892 1.00286 0.89941 1.48079 1.39778 1.06492 1.38846 1.20621 0.81499 0.86054 0.82144 1.90613 1.32984 1.87034 1.32527 1.21767 1.01578 0.92352 1.01787 1.20940 0.94588 0.92593 1.00640 0.90277 1.20663 0.94139 0.97603 1.00725 1.22141 0.99586 0.94870 0.99341 1.21975 0.96483 0.97656 1.02816 1.20404 0.93005 0.98792 1.00231 1.21689 0.99685 0.94247 0.99774 1.22287 1.00436 0.82005 0.98336 1.21344 0.90666 0.99470 0.87375 0.92003 0.96079 0.91360 0.91538 0.90739 0.89070 0.89173 0.88832 0.91423 0.88274 0.88419 0.91119 0.91371 0.91681 0.91659 0.92008 0.89962 0.89108 0.96043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.89 12.38 55.49 0.69 -26.20 16 2 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 3 Si 1.07 24.62 29.99 -169.99 -5.10 19.52 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.36 -9.58 9.48 -15.06 -0.14 -9.72 16 8 H 0.06 1.55 7.95 -52.48 -0.42 1.13 16 9 N -0.60 -14.52 2.82 -171.76 -0.48 -15.00 16 10 C 0.13 2.59 6.70 -3.37 -0.02 2.57 16 11 C 0.09 1.42 6.52 -3.37 -0.02 1.40 16 12 N -0.60 -10.61 2.95 -172.22 -0.51 -11.12 16 13 C 0.51 8.45 7.45 -10.99 -0.08 8.37 16 14 O -0.55 -10.74 13.44 5.56 0.07 -10.66 16 15 C -0.13 -1.64 3.52 -27.88 -0.10 -1.73 16 16 C -0.07 -0.81 1.88 -90.40 -0.17 -0.98 16 17 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 18 C -0.09 -1.21 5.03 -28.18 -0.14 -1.35 16 19 C -0.14 -1.62 9.80 -35.90 -0.35 -1.97 16 20 C -0.17 -1.74 9.80 -35.90 -0.35 -2.09 16 21 C -0.09 -0.78 6.12 -28.17 -0.17 -0.96 16 22 C -0.12 -1.09 5.31 -26.51 -0.14 -1.23 16 23 C 0.09 1.86 6.59 -3.60 -0.02 1.83 16 24 C 0.14 3.22 4.86 -3.60 -0.02 3.21 16 25 H 0.27 8.04 6.76 -40.82 -0.28 7.76 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.91 5.91 -51.93 -0.31 0.60 16 30 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 31 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 32 H 0.09 1.45 6.22 -51.93 -0.32 1.13 16 33 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.64 7.00 -51.92 -0.36 1.28 16 42 H 0.09 2.35 6.24 -51.93 -0.32 2.03 16 43 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -30.92 331.32 -9.23 -40.15 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.08 Total: 1.68 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.82 Total: -3.36 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.30 Total: -52.33 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.92 -9.23 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.198 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds