Wall clock time and date at job start Tue Mar 31 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00308 * 2 1 4 4 H 1.48500 * 109.47217 * 239.72605 * 3 2 1 5 5 H 1.48509 * 109.46989 * 359.72416 * 3 2 1 6 6 H 1.48499 * 109.47361 * 119.72391 * 3 2 1 7 7 C 1.38812 * 119.99800 * 179.71900 * 2 1 3 8 8 H 1.08003 * 119.99656 * 155.17923 * 7 2 1 9 9 N 1.36936 * 120.00503 * 335.18772 * 7 2 1 10 10 C 1.46963 * 120.59925 * 151.60530 * 9 7 2 11 11 C 1.53800 * 108.39652 * 124.75862 * 10 9 7 12 12 N 1.46963 * 108.58502 * 49.64027 * 11 10 9 13 13 C 1.34777 * 120.59616 * 124.61948 * 12 11 10 14 14 O 1.21280 * 119.99563 * 180.02562 * 13 12 11 15 15 C 1.50695 * 120.00184 * 0.02826 * 13 12 11 16 16 C 1.53002 * 109.47267 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.63711 * 304.57700 * 16 15 13 18 18 C 1.53021 * 109.64140 * 64.99760 * 16 15 13 19 19 C 1.50063 * 110.14646 * 169.11959 * 18 16 15 20 20 C 1.29439 * 124.07663 * 342.87152 * 19 18 16 21 21 C 1.50072 * 124.07809 * 0.49167 * 20 19 18 22 22 C 1.53037 * 110.13499 * 342.82770 * 21 20 19 23 23 C 1.46964 * 118.80694 * 304.64683 * 12 11 10 24 24 C 1.46970 * 120.58764 * 331.88596 * 9 7 2 25 25 H 0.96992 * 120.00285 * 174.26591 * 1 2 3 26 26 H 1.09005 * 109.60644 * 244.54168 * 10 9 7 27 27 H 1.09005 * 109.60393 * 5.04755 * 10 9 7 28 28 H 1.09003 * 109.74543 * 289.84461 * 11 10 9 29 29 H 1.09006 * 109.53062 * 169.30670 * 11 10 9 30 30 H 1.09002 * 109.46764 * 299.99820 * 15 13 12 31 31 H 1.09003 * 109.46958 * 59.99810 * 15 13 12 32 32 H 1.08996 * 109.35882 * 289.33047 * 18 16 15 33 33 H 1.09000 * 109.35735 * 49.05003 * 18 16 15 34 34 H 1.08003 * 117.96617 * 162.88915 * 19 18 16 35 35 H 1.08001 * 117.96512 * 180.46788 * 20 19 18 36 36 H 1.09001 * 109.36033 * 103.04703 * 21 20 19 37 37 H 1.09002 * 109.35670 * 222.77844 * 21 20 19 38 38 H 1.08993 * 109.66361 * 289.78135 * 22 21 20 39 39 H 1.09001 * 109.63900 * 169.14056 * 22 21 20 40 40 H 1.08997 * 109.61364 * 295.47513 * 23 12 11 41 41 H 1.09009 * 109.74903 * 175.05163 * 23 12 11 42 42 H 1.09000 * 109.60988 * 354.94848 * 24 9 7 43 43 H 1.09006 * 109.60764 * 115.28670 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1090 1.6934 -1.2091 5 1 1.2852 2.7465 -0.0067 6 1 3.0989 1.6993 1.2158 7 6 2.0102 -1.2022 0.0059 8 1 3.0154 -1.2473 -0.3865 9 7 1.4204 -2.3309 0.5091 10 6 1.7988 -3.6596 0.0079 11 6 2.2350 -4.5232 1.2035 12 7 1.2078 -4.4272 2.2501 13 6 0.6266 -5.5381 2.7447 14 8 -0.2202 -5.4462 3.6080 15 6 1.0290 -6.8942 2.2251 16 6 0.2249 -7.9766 2.9482 17 1 0.3591 -7.8747 4.0251 18 6 -1.2582 -7.8352 2.5989 19 6 -2.0193 -9.0355 3.0806 20 6 -1.4686 -10.1606 3.4066 21 6 0.0090 -10.4187 3.3586 22 6 0.7005 -9.3624 2.4937 23 6 0.8254 -3.0982 2.7473 24 6 0.3931 -2.2348 1.5557 25 1 -0.4850 -0.8357 -0.0839 26 1 0.9442 -4.1207 -0.4875 27 1 2.6249 -3.5631 -0.6966 28 1 3.1873 -4.1612 1.5912 29 1 2.3374 -5.5608 0.8854 30 1 0.8296 -6.9470 1.1548 31 1 2.0926 -7.0512 2.4048 32 1 -1.6575 -6.9394 3.0744 33 1 -1.3682 -7.7500 1.5179 34 1 -3.0934 -8.9558 3.1599 35 1 -2.1125 -10.9636 3.7339 36 1 0.4154 -10.3811 4.3693 37 1 0.1897 -11.4058 2.9329 38 1 0.4368 -9.5152 1.4472 39 1 1.7808 -9.4377 2.6172 40 1 1.6772 -2.6347 3.2450 41 1 -0.0023 -3.1921 3.4504 42 1 0.2907 -1.1973 1.8737 43 1 -0.5599 -2.5940 1.1671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:42 Heat of formation + Delta-G solvation = -27.231331 kcal Electronic energy + Delta-G solvation = -22278.801895 eV Core-core repulsion = 19130.409898 eV Total energy + Delta-G solvation = -3148.391997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33393 -39.48377 -38.39427 -35.87233 -33.88118 -33.00595 -32.07065 -31.58044 -29.00657 -27.86645 -25.37650 -24.59638 -24.02607 -22.67718 -21.65405 -20.17198 -19.23279 -18.78551 -17.89764 -17.05428 -16.73605 -16.45834 -16.21582 -15.70933 -15.45294 -15.27870 -15.15241 -14.90913 -14.63230 -14.08114 -13.87381 -13.80486 -13.43224 -13.15457 -13.01016 -12.85100 -12.59896 -12.45246 -12.35967 -12.20883 -12.19554 -11.90243 -11.63343 -11.46482 -11.37352 -11.01042 -10.63118 -10.54270 -9.91096 -9.81488 -8.91819 -8.25754 -5.45938 1.42480 1.59288 1.63862 1.67511 1.85186 2.01547 2.65236 3.18544 3.45390 3.51729 3.71603 3.82721 4.04782 4.10284 4.15312 4.26210 4.27139 4.39902 4.41862 4.48452 4.53436 4.55980 4.63143 4.72286 4.75121 4.77199 4.81716 4.87652 4.96392 5.00885 5.06232 5.12014 5.14797 5.23886 5.38701 5.49678 5.52581 5.79693 5.81525 6.09440 6.32754 6.50635 6.97650 7.19660 7.70727 8.16113 8.96219 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043675 B = 0.003591 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.947743 B = 7794.767786 C = 8011.349187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.077 4.077 3 Si 1.116 2.884 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.356 4.356 8 H 0.061 0.939 9 N -0.617 5.617 10 C 0.125 3.875 11 C 0.100 3.900 12 N -0.607 5.607 13 C 0.503 3.497 14 O -0.586 6.586 15 C -0.127 4.127 16 C -0.066 4.066 17 H 0.060 0.940 18 C -0.093 4.093 19 C -0.169 4.169 20 C -0.159 4.159 21 C -0.092 4.092 22 C -0.110 4.110 23 C 0.107 3.893 24 C 0.150 3.850 25 H 0.251 0.749 26 H 0.017 0.983 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.058 0.942 43 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 -20.537 4.161 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.273 4.273 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.485 4.485 8 H 0.079 0.921 9 N -0.342 5.342 10 C 0.000 4.000 11 C -0.023 4.023 12 N -0.339 5.339 13 C 0.294 3.706 14 O -0.467 6.467 15 C -0.166 4.166 16 C -0.085 4.085 17 H 0.079 0.921 18 C -0.130 4.130 19 C -0.187 4.187 20 C -0.177 4.177 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.018 4.018 24 C 0.023 3.977 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 4.229 -18.843 4.648 19.863 hybrid contribution -0.613 -0.999 -0.167 1.184 sum 3.616 -19.842 4.481 20.661 Atomic orbital electron populations 1.70918 1.07789 1.29293 1.50472 1.27267 0.96501 1.05125 0.98429 0.82843 0.73800 0.71884 0.77441 1.19816 1.22228 1.20471 1.20275 0.97477 0.89549 1.41223 0.92118 1.44327 1.46298 1.02589 1.40968 1.21598 0.98249 0.85327 0.94872 1.22448 0.90098 1.02198 0.87568 1.48188 1.40499 1.05689 1.39516 1.21535 0.80426 0.87242 0.81387 1.90614 1.34313 1.87616 1.34118 1.21849 1.03389 0.88889 1.02458 1.20910 0.93686 0.94331 0.99569 0.92117 1.20564 0.95367 0.96740 1.00327 1.22125 0.99681 0.95214 1.01681 1.22277 0.97752 0.97230 1.00438 1.20516 0.91781 0.99814 1.00751 1.21676 1.00962 0.92120 1.00005 1.21880 1.00202 0.83220 0.96454 1.21064 0.89899 0.98180 0.88542 0.93867 0.96509 0.90458 0.90891 0.85875 0.87240 0.85900 0.92531 0.91503 0.88443 0.86990 0.90576 0.89195 0.91067 0.89457 0.91829 0.90593 0.92402 0.98410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 12.38 21.65 0.27 -57.36 16 2 C -0.08 -4.32 4.69 84.86 0.40 -3.92 16 3 Si 1.12 49.97 29.99 68.60 2.06 52.03 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.36 -19.27 9.48 84.03 0.80 -18.47 16 8 H 0.06 3.20 7.95 -2.91 -0.02 3.18 16 9 N -0.62 -30.17 2.82 -697.34 -1.96 -32.14 16 10 C 0.13 4.73 6.70 86.56 0.58 5.31 16 11 C 0.10 2.88 6.52 86.56 0.56 3.45 16 12 N -0.61 -20.68 2.95 -817.17 -2.41 -23.08 16 13 C 0.50 16.08 7.45 87.66 0.65 16.73 16 14 O -0.59 -23.05 13.44 -3.03 -0.04 -23.09 16 15 C -0.13 -2.64 3.52 29.85 0.11 -2.53 16 16 C -0.07 -1.41 1.88 -10.65 -0.02 -1.43 16 17 H 0.06 1.53 7.96 -2.39 -0.02 1.51 16 18 C -0.09 -2.36 5.03 29.66 0.15 -2.21 16 19 C -0.17 -3.77 9.80 27.04 0.27 -3.50 16 20 C -0.16 -2.88 9.80 27.04 0.27 -2.62 16 21 C -0.09 -1.32 6.12 29.66 0.18 -1.14 16 22 C -0.11 -1.62 5.31 30.74 0.16 -1.46 16 23 C 0.11 4.35 6.59 86.41 0.57 4.92 16 24 C 0.15 7.30 4.86 86.41 0.42 7.72 16 25 H 0.25 15.82 6.76 -92.71 -0.63 15.20 16 26 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.08 2.76 7.93 -2.38 -0.02 2.74 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.12 2.37 5.91 -2.38 -0.01 2.35 16 30 H 0.11 1.96 7.69 -2.39 -0.02 1.95 16 31 H 0.12 1.84 7.91 -2.39 -0.02 1.82 16 32 H 0.06 1.84 6.22 -2.39 -0.01 1.82 16 33 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.10 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.11 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.08 3.15 7.00 -2.38 -0.02 3.13 16 42 H 0.06 3.17 6.24 -2.39 -0.01 3.15 16 43 H 0.00 -0.11 7.93 -2.38 -0.02 -0.13 16 Total: -1.00 -70.28 331.32 4.12 -66.16 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.11 Total: 16.64 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.09 Total: 0.84 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.10 Total: -112.58 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.06 Total: 52.03 kcal Total: -70.28 4.12 -66.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.928 kcal (2) G-P(sol) polarization free energy of solvation -70.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds