Wall clock time and date at job start Tue Mar 31 2020 00:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47116 * 274.44400 * 3 2 1 5 5 H 1.48506 * 109.47174 * 34.43835 * 3 2 1 6 6 H 1.48495 * 109.47695 * 154.44471 * 3 2 1 7 7 C 1.38812 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 189.00798 * 7 2 1 9 9 N 1.36938 * 119.99912 * 9.00749 * 7 2 1 10 10 C 1.48149 * 127.83809 * 15.57417 * 9 7 2 11 11 C 1.54381 * 104.61609 * 140.39116 * 10 9 7 12 12 H 1.09006 * 118.18697 * 244.20108 * 11 10 9 13 13 C 1.54284 * 104.96515 * 23.86678 * 11 10 9 14 14 H 1.08994 * 121.82259 * 222.17563 * 13 11 10 15 15 C 1.48145 * 127.83962 * 195.54498 * 9 7 2 16 16 C 1.53003 * 59.72289 * 114.13687 * 13 11 10 17 17 H 1.08996 * 117.44549 * 252.35346 * 16 13 11 18 18 N 1.46503 * 117.40179 * 107.66624 * 16 13 11 19 19 C 1.34777 * 119.99628 * 135.94611 * 18 16 13 20 20 O 1.21279 * 119.99896 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99626 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.46890 * 299.99090 * 21 19 18 23 23 C 1.52998 * 109.47178 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.46925 * 60.00328 * 23 22 21 25 25 C 1.53006 * 109.47236 * 299.99965 * 24 23 22 26 26 C 1.52998 * 109.47135 * 60.00164 * 25 24 23 27 27 H 0.96998 * 120.00040 * 0.02562 * 1 2 3 28 28 H 1.08999 * 110.40421 * 21.60894 * 10 9 7 29 29 H 1.08991 * 110.40336 * 259.17691 * 10 9 7 30 30 H 1.09003 * 110.40801 * 100.82189 * 15 9 7 31 31 H 1.08999 * 110.40597 * 338.39607 * 15 9 7 32 32 H 0.96993 * 120.00146 * 315.93976 * 18 16 13 33 33 H 1.08997 * 109.47566 * 59.99614 * 21 19 18 34 34 H 1.08997 * 109.47444 * 300.00599 * 22 21 19 35 35 H 1.09000 * 109.46933 * 60.00203 * 22 21 19 36 36 H 1.08997 * 109.47234 * 300.00497 * 23 22 21 37 37 H 1.08997 * 109.47324 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47099 * 180.02562 * 24 23 22 39 39 H 1.09003 * 109.47446 * 59.99882 * 24 23 22 40 40 H 1.08997 * 109.47176 * 299.99987 * 25 24 23 41 41 H 1.09000 * 109.47244 * 180.02562 * 25 24 23 42 42 H 1.08993 * 109.47385 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.47234 * 59.99858 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4038 2.1006 -1.3959 5 1 1.4978 2.6238 0.7918 6 1 3.5916 1.4149 0.6039 7 6 2.0103 -1.2021 0.0005 8 1 3.0803 -1.2079 0.1470 9 7 1.3382 -2.3808 -0.1846 10 6 -0.0352 -2.5717 -0.7062 11 6 0.0617 -3.8183 -1.6117 12 1 -0.1268 -3.6958 -2.6784 13 6 1.2848 -4.5982 -1.0864 14 1 2.0074 -5.0566 -1.7614 15 6 1.8199 -3.7545 0.0907 16 6 -0.1194 -5.1939 -0.9669 17 1 -0.5678 -5.2281 0.0260 18 7 -0.4538 -6.3145 -1.8494 19 6 -1.1065 -7.3868 -1.3589 20 8 -1.4167 -7.4242 -0.1871 21 6 -1.4500 -8.5398 -2.2666 22 6 -2.3507 -8.0456 -3.4003 23 6 -2.6999 -9.2162 -4.3215 24 6 -3.4332 -10.2941 -3.5207 25 6 -2.5325 -10.7884 -2.3869 26 6 -2.1833 -9.6177 -1.4657 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3451 -1.7030 -1.2872 29 1 -0.7314 -2.7502 0.1131 30 1 1.4133 -4.1178 1.0345 31 1 2.9094 -3.7783 0.1110 32 1 -0.2055 -6.2847 -2.7865 33 1 -0.5346 -8.9577 -2.6856 34 1 -3.2661 -7.6277 -2.9814 35 1 -1.8285 -7.2773 -3.9706 36 1 -1.7847 -9.6344 -4.7405 37 1 -3.3412 -8.8640 -5.1294 38 1 -3.6816 -11.1283 -4.1768 39 1 -4.3484 -9.8759 -3.1016 40 1 -1.6173 -11.2066 -2.8059 41 1 -3.0548 -11.5566 -1.8166 42 1 -1.5413 -9.9697 -0.6583 43 1 -3.0985 -9.1995 -1.0467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958104359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:06 Heat of formation + Delta-G solvation = -3.151266 kcal Electronic energy + Delta-G solvation = -21612.744870 eV Core-core repulsion = 18465.397063 eV Total energy + Delta-G solvation = -3147.347807 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26017 -38.73785 -37.45353 -34.47367 -32.75567 -31.30487 -30.96039 -30.01080 -27.13825 -25.74806 -23.97693 -22.82357 -21.69535 -20.52549 -20.30163 -19.65988 -19.27116 -17.14631 -16.81690 -16.28652 -15.52687 -14.96466 -14.71409 -14.44158 -14.34042 -13.81835 -13.64591 -13.30527 -12.90923 -12.72436 -12.57106 -12.46564 -12.16856 -11.61791 -11.49232 -11.42873 -11.38272 -10.99247 -10.88513 -10.84021 -10.67377 -10.38551 -10.36342 -10.18321 -10.13909 -9.74690 -9.60389 -9.16884 -8.73090 -8.30826 -6.86959 -5.79741 -3.14180 2.67705 3.16736 3.38376 3.43567 3.45843 4.30816 4.38834 4.42489 4.47570 4.48976 4.92225 4.93550 4.99701 5.13503 5.17423 5.21083 5.24949 5.34333 5.38726 5.39578 5.54400 5.58676 5.74735 5.80726 5.82984 5.84656 5.91385 5.91625 5.95682 6.07353 6.16356 6.20395 6.26874 6.53919 6.70184 6.83637 6.90819 7.35269 7.53108 7.62307 7.71390 8.20414 8.33438 9.10827 9.73478 10.50660 11.34637 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.003031 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.488362 B = 9234.523297 C = 9429.596394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.186 3.814 11 C -0.179 4.179 12 H 0.102 0.898 13 C -0.186 4.186 14 H 0.102 0.898 15 C 0.156 3.844 16 C 0.097 3.903 17 H 0.131 0.869 18 N -0.698 5.698 19 C 0.517 3.483 20 O -0.539 6.539 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.100 4.100 27 H 0.254 0.746 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.051 0.949 32 H 0.398 0.602 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -19.726 -9.729 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.060 3.940 11 C -0.201 4.201 12 H 0.120 0.880 13 C -0.207 4.207 14 H 0.120 0.880 15 C 0.029 3.971 16 C -0.009 4.009 17 H 0.148 0.852 18 N -0.346 5.346 19 C 0.304 3.696 20 O -0.415 6.415 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.232 0.768 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.880 -19.464 -8.826 21.921 hybrid contribution 0.662 0.897 -0.650 1.290 sum -4.218 -18.567 -9.475 21.267 Atomic orbital electron populations 1.69899 1.05051 1.25414 1.55758 1.24908 0.95659 0.97995 1.01751 0.86079 0.78731 0.83284 0.77521 1.21563 1.21653 1.20488 1.19017 0.90824 0.82284 1.43379 0.90493 1.45186 1.13248 1.00009 1.73230 1.21046 0.86936 0.92405 0.93661 1.24683 1.02362 0.92635 1.00374 0.88041 1.24366 0.90525 1.02678 1.03166 0.88023 1.21114 0.97179 0.85823 0.92998 1.21846 0.98336 0.84956 0.95788 0.85182 1.45435 1.58423 1.18090 1.12676 1.20647 0.77071 0.83204 0.88705 1.90698 1.53188 1.80141 1.17489 1.21358 1.00545 0.94554 0.96147 1.21544 0.99832 0.98030 0.95563 1.21523 1.00590 0.95667 0.97705 1.21572 0.98799 0.98309 0.97293 1.21563 0.99746 0.97601 0.96795 1.21344 1.00950 0.94169 0.97287 0.93539 0.89047 0.95627 0.95487 0.93030 0.76848 0.88684 0.91163 0.91414 0.91804 0.91648 0.92059 0.91832 0.91998 0.91721 0.91199 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.86 55.49 0.60 -26.31 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.97 29.56 -169.99 -5.03 16.95 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.59 -15.38 3.38 -168.87 -0.57 -15.95 16 10 C 0.19 4.51 5.70 -2.41 -0.01 4.49 16 11 C -0.18 -3.40 7.06 -89.22 -0.63 -4.03 16 12 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 13 C -0.19 -3.36 7.06 -89.22 -0.63 -3.99 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.16 3.35 7.04 -2.41 -0.02 3.33 16 16 C 0.10 1.66 5.98 -67.93 -0.41 1.26 16 17 H 0.13 2.57 7.40 -51.93 -0.38 2.18 16 18 N -0.70 -9.42 5.45 -53.80 -0.29 -9.72 16 19 C 0.52 7.23 7.15 -10.98 -0.08 7.15 16 20 O -0.54 -9.84 15.55 5.56 0.09 -9.75 16 21 C -0.10 -1.02 2.53 -91.77 -0.23 -1.25 16 22 C -0.11 -0.93 5.10 -26.73 -0.14 -1.06 16 23 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 24 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 25 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 26 C -0.10 -0.98 4.49 -26.73 -0.12 -1.10 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.40 4.21 8.24 -40.82 -0.34 3.88 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -31.81 339.66 -10.40 -42.21 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.34 Total: 2.41 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.99 Total: -4.96 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.26 Total: -51.97 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.81 -10.40 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958104359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.062 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds