Wall clock time and date at job start Tue Mar 31 2020 00:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47116 * 274.44400 * 3 2 1 5 5 H 1.48506 * 109.47174 * 34.43835 * 3 2 1 6 6 H 1.48495 * 109.47695 * 154.44471 * 3 2 1 7 7 C 1.38812 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 189.00798 * 7 2 1 9 9 N 1.36938 * 119.99912 * 9.00749 * 7 2 1 10 10 C 1.48149 * 127.83809 * 15.57417 * 9 7 2 11 11 C 1.54381 * 104.61609 * 140.39116 * 10 9 7 12 12 H 1.09006 * 118.18697 * 244.20108 * 11 10 9 13 13 C 1.54284 * 104.96515 * 23.86678 * 11 10 9 14 14 H 1.08994 * 121.82259 * 222.17563 * 13 11 10 15 15 C 1.48145 * 127.83962 * 195.54498 * 9 7 2 16 16 C 1.53003 * 59.72289 * 114.13687 * 13 11 10 17 17 H 1.08996 * 117.44549 * 252.35346 * 16 13 11 18 18 N 1.46503 * 117.40179 * 107.66624 * 16 13 11 19 19 C 1.34777 * 119.99628 * 135.94611 * 18 16 13 20 20 O 1.21279 * 119.99896 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99626 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.46890 * 299.99090 * 21 19 18 23 23 C 1.52998 * 109.47178 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.46925 * 60.00328 * 23 22 21 25 25 C 1.53006 * 109.47236 * 299.99965 * 24 23 22 26 26 C 1.52998 * 109.47135 * 60.00164 * 25 24 23 27 27 H 0.96998 * 120.00040 * 0.02562 * 1 2 3 28 28 H 1.08999 * 110.40421 * 21.60894 * 10 9 7 29 29 H 1.08991 * 110.40336 * 259.17691 * 10 9 7 30 30 H 1.09003 * 110.40801 * 100.82189 * 15 9 7 31 31 H 1.08999 * 110.40597 * 338.39607 * 15 9 7 32 32 H 0.96993 * 120.00146 * 315.93976 * 18 16 13 33 33 H 1.08997 * 109.47566 * 59.99614 * 21 19 18 34 34 H 1.08997 * 109.47444 * 300.00599 * 22 21 19 35 35 H 1.09000 * 109.46933 * 60.00203 * 22 21 19 36 36 H 1.08997 * 109.47234 * 300.00497 * 23 22 21 37 37 H 1.08997 * 109.47324 * 180.02562 * 23 22 21 38 38 H 1.09005 * 109.47099 * 180.02562 * 24 23 22 39 39 H 1.09003 * 109.47446 * 59.99882 * 24 23 22 40 40 H 1.08997 * 109.47176 * 299.99987 * 25 24 23 41 41 H 1.09000 * 109.47244 * 180.02562 * 25 24 23 42 42 H 1.08993 * 109.47385 * 180.02562 * 26 25 24 43 43 H 1.08997 * 109.47234 * 59.99858 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4038 2.1006 -1.3959 5 1 1.4978 2.6238 0.7918 6 1 3.5916 1.4149 0.6039 7 6 2.0103 -1.2021 0.0005 8 1 3.0803 -1.2079 0.1470 9 7 1.3382 -2.3808 -0.1846 10 6 -0.0352 -2.5717 -0.7062 11 6 0.0617 -3.8183 -1.6117 12 1 -0.1268 -3.6958 -2.6784 13 6 1.2848 -4.5982 -1.0864 14 1 2.0074 -5.0566 -1.7614 15 6 1.8199 -3.7545 0.0907 16 6 -0.1194 -5.1939 -0.9669 17 1 -0.5678 -5.2281 0.0260 18 7 -0.4538 -6.3145 -1.8494 19 6 -1.1065 -7.3868 -1.3589 20 8 -1.4167 -7.4242 -0.1871 21 6 -1.4500 -8.5398 -2.2666 22 6 -2.3507 -8.0456 -3.4003 23 6 -2.6999 -9.2162 -4.3215 24 6 -3.4332 -10.2941 -3.5207 25 6 -2.5325 -10.7884 -2.3869 26 6 -2.1833 -9.6177 -1.4657 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3451 -1.7030 -1.2872 29 1 -0.7314 -2.7502 0.1131 30 1 1.4133 -4.1178 1.0345 31 1 2.9094 -3.7783 0.1110 32 1 -0.2055 -6.2847 -2.7865 33 1 -0.5346 -8.9577 -2.6856 34 1 -3.2661 -7.6277 -2.9814 35 1 -1.8285 -7.2773 -3.9706 36 1 -1.7847 -9.6344 -4.7405 37 1 -3.3412 -8.8640 -5.1294 38 1 -3.6816 -11.1283 -4.1768 39 1 -4.3484 -9.8759 -3.1016 40 1 -1.6173 -11.2066 -2.8059 41 1 -3.0548 -11.5566 -1.8166 42 1 -1.5413 -9.9697 -0.6583 43 1 -3.0985 -9.1995 -1.0467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958104359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:06 Heat of formation + Delta-G solvation = -22.570354 kcal Electronic energy + Delta-G solvation = -21613.586945 eV Core-core repulsion = 18465.397063 eV Total energy + Delta-G solvation = -3148.189882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41064 -40.16284 -38.40031 -36.10433 -34.40182 -32.53265 -31.64803 -31.40716 -28.94431 -27.65698 -25.02169 -23.53954 -23.17098 -21.97131 -21.40406 -20.89647 -20.52662 -18.89138 -18.14224 -17.64959 -16.75496 -16.39391 -15.98998 -15.56600 -15.17995 -15.03230 -14.91343 -14.69582 -14.66242 -13.86259 -13.64272 -13.42789 -13.25283 -13.17418 -13.07401 -12.87128 -12.72192 -12.23990 -12.12778 -12.03304 -12.01599 -11.88383 -11.68094 -11.53520 -11.32264 -11.00011 -10.89894 -10.76131 -10.61596 -9.71401 -8.94755 -7.93149 -5.30645 1.46509 1.48204 1.54040 1.57920 1.98625 2.47683 2.82971 3.27153 3.52487 3.63002 3.75635 3.79154 3.84274 3.92012 4.11763 4.23486 4.29980 4.32980 4.37373 4.47425 4.49331 4.58072 4.62339 4.73246 4.81735 4.89112 4.96287 5.00828 5.15295 5.19794 5.26273 5.27576 5.28687 5.38288 5.39834 5.42572 5.44266 5.53494 5.59325 5.62323 6.14681 6.53469 6.98377 7.23887 7.65168 8.43739 9.20820 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.047088 B = 0.003031 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.488362 B = 9234.523297 C = 9429.596394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.189 3.811 11 C -0.177 4.177 12 H 0.128 0.872 13 C -0.167 4.167 14 H 0.137 0.863 15 C 0.148 3.852 16 C 0.115 3.885 17 H 0.100 0.900 18 N -0.682 5.682 19 C 0.514 3.486 20 O -0.587 6.587 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.100 4.100 27 H 0.250 0.750 28 H 0.060 0.940 29 H -0.007 1.007 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.418 0.582 33 H 0.124 0.876 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -21.435 -12.253 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.198 4.198 12 H 0.146 0.854 13 C -0.188 4.188 14 H 0.155 0.845 15 C 0.022 3.978 16 C 0.008 3.992 17 H 0.118 0.882 18 N -0.332 5.332 19 C 0.303 3.697 20 O -0.467 6.467 21 C -0.115 4.115 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.151 4.151 26 C -0.139 4.139 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.011 0.989 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.255 0.745 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.572 -21.215 -11.390 24.342 hybrid contribution 0.222 1.379 0.232 1.416 sum -3.349 -19.836 -11.158 23.004 Atomic orbital electron populations 1.70105 1.06628 1.25819 1.57074 1.25795 0.96524 1.01449 1.01936 0.84990 0.77792 0.78618 0.77465 1.21008 1.22177 1.19060 1.19426 0.91421 0.83430 1.42794 0.89869 1.45494 1.13664 1.01147 1.73789 1.20777 0.86008 0.93813 0.93120 1.24358 1.03842 0.91067 1.00566 0.85395 1.24277 0.91010 1.01847 1.01704 0.84533 1.21251 0.98013 0.84487 0.94040 1.21358 0.97520 0.85260 0.95060 0.88190 1.45250 1.58098 1.16733 1.13148 1.21515 0.75754 0.83850 0.88614 1.90688 1.54947 1.81101 1.19957 1.21394 1.02034 0.92470 0.95562 1.21571 0.98831 0.99194 0.95241 1.21519 1.01444 0.94744 0.97344 1.21594 0.98280 0.98944 0.97273 1.21533 1.00611 0.96443 0.96513 1.21339 0.99673 0.95220 0.97631 0.94060 0.92131 0.98894 0.96643 0.91728 0.74481 0.85852 0.92908 0.90020 0.90243 0.90755 0.90524 0.92849 0.90534 0.91389 0.92623 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.72 10.86 21.65 0.24 -57.49 16 2 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 3 Si 0.98 45.64 29.56 68.60 2.03 47.66 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.72 10.35 84.03 0.87 -12.85 16 8 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 9 N -0.62 -32.56 3.38 -688.17 -2.33 -34.89 16 10 C 0.19 9.52 5.70 86.53 0.49 10.01 16 11 C -0.18 -6.59 7.06 -9.89 -0.07 -6.66 16 12 H 0.13 4.11 8.14 -2.38 -0.02 4.09 16 13 C -0.17 -5.74 7.06 -9.89 -0.07 -5.81 16 14 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 15 C 0.15 6.33 7.04 86.53 0.61 6.94 16 16 C 0.12 3.88 5.98 44.99 0.27 4.15 16 17 H 0.10 4.07 7.40 -2.39 -0.02 4.06 16 18 N -0.68 -16.93 5.45 -442.52 -2.41 -19.35 16 19 C 0.51 13.78 7.15 87.66 0.63 14.41 16 20 O -0.59 -21.82 15.55 -3.03 -0.05 -21.87 16 21 C -0.09 -1.62 2.53 -11.54 -0.03 -1.65 16 22 C -0.11 -1.54 5.10 30.59 0.16 -1.38 16 23 C -0.11 -1.13 5.92 30.59 0.18 -0.94 16 24 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 25 C -0.11 -1.42 5.92 30.60 0.18 -1.24 16 26 C -0.10 -1.89 4.49 30.60 0.14 -1.75 16 27 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.06 3.40 6.51 -2.39 -0.02 3.39 16 29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.42 7.23 8.24 -92.71 -0.76 6.47 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.92 7.56 -2.39 -0.02 0.90 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 43 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -72.23 339.66 1.69 -70.54 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.22 Total: 16.50 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.00 Total: -1.12 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.50 Total: -111.72 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -72.23 1.69 -70.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958104359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.970 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds