Wall clock time and date at job start Mon Mar 30 2020 23:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00183 * 3 2 1 5 5 H 1.48508 * 109.46933 * 29.99839 * 3 2 1 6 6 H 1.48497 * 109.47567 * 149.99714 * 3 2 1 7 7 C 1.38810 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99823 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00443 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00094 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.91605 * 37.44671 * 10 9 7 12 12 C 1.55159 * 110.99960 * 273.54255 * 10 9 7 13 13 C 1.54324 * 102.94134 * 206.42552 * 12 10 9 14 14 N 1.47020 * 107.39983 * 22.11770 * 13 12 10 15 15 C 1.34780 * 125.64983 * 181.10309 * 14 13 12 16 16 O 1.21276 * 120.00190 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99770 * 0.02562 * 15 14 13 18 18 C 1.50696 * 109.47502 * 179.97438 * 17 15 14 19 19 C 1.29438 * 117.96276 * 94.73349 * 18 17 15 20 20 C 1.50067 * 124.07893 * 180.23898 * 19 18 17 21 21 C 1.53017 * 110.20070 * 343.32097 * 20 19 18 22 22 C 1.53400 * 108.43611 * 49.25168 * 21 20 19 23 23 C 1.50068 * 117.96357 * 275.00643 * 18 17 15 24 24 C 1.47743 * 108.53125 * 1.18235 * 14 13 12 25 25 H 0.96998 * 120.00296 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.98906 * 359.97438 * 9 7 2 27 27 H 1.09004 * 110.72010 * 88.06342 * 12 10 9 28 28 H 1.08995 * 110.87585 * 324.86191 * 12 10 9 29 29 H 1.09002 * 109.88322 * 141.61300 * 13 12 10 30 30 H 1.09000 * 109.88025 * 262.62465 * 13 12 10 31 31 H 1.08992 * 109.47408 * 300.00360 * 17 15 14 32 32 H 1.09005 * 109.47188 * 60.00318 * 17 15 14 33 33 H 1.08008 * 117.96203 * 0.47518 * 19 18 17 34 34 H 1.09004 * 109.48484 * 222.99911 * 20 19 18 35 35 H 1.09005 * 109.06281 * 103.38177 * 20 19 18 36 36 H 1.08995 * 109.64464 * 289.56373 * 21 20 19 37 37 H 1.09007 * 109.64098 * 168.93005 * 21 20 19 38 38 H 1.08999 * 109.64004 * 172.88204 * 22 21 20 39 39 H 1.08991 * 109.64405 * 52.24318 * 22 21 20 40 40 H 1.09002 * 109.35904 * 283.04839 * 23 18 17 41 41 H 1.09003 * 109.35677 * 42.63544 * 23 18 17 42 42 H 1.09003 * 110.29227 * 216.94505 * 24 14 13 43 43 H 1.08996 * 110.53057 * 94.67717 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.6070 -3.2118 -0.6183 12 6 4.3122 -2.9974 1.4468 13 6 5.5900 -3.8546 1.3287 14 7 6.3241 -3.3886 0.1432 15 6 7.4847 -3.8997 -0.3132 16 8 8.0038 -3.4340 -1.3054 17 6 8.1374 -5.0498 0.4094 18 6 9.4121 -5.4298 -0.2989 19 6 10.5202 -4.9146 0.1278 20 6 11.8650 -5.1933 -0.4772 21 6 11.7999 -6.4441 -1.3562 22 6 10.5956 -6.3136 -2.2974 23 6 9.3171 -6.3771 -1.4589 24 6 5.5767 -2.2663 -0.4607 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3619 0.0007 27 1 3.4644 -3.6093 1.7550 28 1 4.4640 -2.1726 2.1430 29 1 6.2053 -3.7274 2.2195 30 1 5.3224 -4.9045 1.2100 31 1 8.3647 -4.7536 1.4334 32 1 7.4598 -5.9037 0.4202 33 1 10.4747 -4.2452 0.9742 34 1 12.5960 -5.3472 0.3166 35 1 12.1658 -4.3398 -1.0849 36 1 11.6804 -7.3272 -0.7286 37 1 12.7152 -6.5283 -1.9421 38 1 10.6027 -7.1321 -3.0172 39 1 10.6425 -5.3595 -2.8222 40 1 9.1795 -7.3921 -1.0862 41 1 8.4639 -6.1036 -2.0797 42 1 5.6413 -2.3107 -1.5479 43 1 5.9594 -1.3126 -0.0974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967751903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:17 Heat of formation + Delta-G solvation = -19.750142 kcal Electronic energy + Delta-G solvation = -21520.766289 eV Core-core repulsion = 18372.698701 eV Total energy + Delta-G solvation = -3148.067588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09398 -38.62758 -37.21641 -34.28605 -33.04346 -31.62254 -30.90257 -29.88827 -28.66053 -26.96869 -23.70665 -23.30333 -22.69493 -21.79452 -20.22930 -19.12666 -17.76640 -17.72570 -16.91623 -16.23379 -15.90918 -15.12708 -14.82366 -14.34397 -14.19720 -13.93870 -13.77642 -13.48101 -13.33150 -12.82041 -12.64530 -12.57818 -12.31641 -12.29121 -12.15263 -11.88904 -11.73371 -11.45910 -10.97112 -10.93145 -10.74745 -10.62906 -10.50099 -10.38299 -10.10537 -9.80411 -9.66364 -9.01279 -8.87071 -8.49229 -7.38363 -5.84637 -3.22382 2.05970 2.73507 3.16756 3.33772 3.37167 3.42315 4.41657 4.51770 4.52698 4.66330 4.74334 4.90045 4.95185 5.03627 5.17864 5.18886 5.22854 5.28203 5.39375 5.41536 5.42383 5.46717 5.52503 5.61295 5.64698 5.75049 5.78460 5.84625 5.85263 5.91285 5.99909 6.10700 6.16309 6.24883 6.42777 6.49893 6.52088 6.76949 6.87812 7.66136 7.89266 8.27657 8.33760 9.10425 9.82844 10.01006 11.33076 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039884 B = 0.003128 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.860049 B = 8948.031018 C = 9119.618194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.154 4.154 13 C 0.100 3.900 14 N -0.617 5.617 15 C 0.528 3.472 16 O -0.539 6.539 17 C -0.105 4.105 18 C -0.098 4.098 19 C -0.150 4.150 20 C -0.087 4.087 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.080 4.080 24 C 0.097 3.903 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.394 -13.944 2.086 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.065 3.935 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.023 4.023 14 N -0.351 5.351 15 C 0.316 3.684 16 O -0.416 6.416 17 C -0.145 4.145 18 C -0.098 4.098 19 C -0.168 4.168 20 C -0.124 4.124 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.116 4.116 24 C -0.026 4.026 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.464 -13.768 1.515 25.545 hybrid contribution 0.355 1.345 0.298 1.423 sum 21.819 -12.423 1.813 25.173 Atomic orbital electron populations 1.69692 1.05119 1.26018 1.56888 1.24670 0.95234 0.97274 1.01599 0.86571 0.79206 0.84906 0.77952 1.20900 1.21625 1.20273 1.19022 0.80148 0.94852 1.43828 0.89004 1.42610 1.04155 1.01497 1.89873 1.21260 0.89040 0.89844 0.93307 0.91030 1.23366 0.95046 0.99550 1.01505 1.22111 0.94020 0.98816 0.87357 1.48564 1.22422 1.34977 1.29176 1.20213 0.79463 0.83986 0.84723 1.90700 1.62837 1.61794 1.26230 1.20825 0.96458 0.97422 0.99758 1.20301 0.93159 0.99085 0.97287 1.21842 0.94196 0.99956 1.00819 1.20400 0.95006 0.98212 0.98776 1.21602 0.98249 0.97895 0.97966 1.21576 0.94254 1.02203 0.97584 1.20340 0.98759 0.97664 0.94885 1.22566 0.92227 0.88902 0.98934 0.92902 0.80327 0.90233 0.90645 0.92017 0.91675 0.88662 0.88464 0.88223 0.91320 0.90952 0.91867 0.91896 0.91838 0.91439 0.91205 0.90851 0.90416 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.68 27.74 -169.99 -4.71 16.96 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.77 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.82 5.08 -51.35 -0.26 -17.08 16 10 C 0.18 3.24 3.69 -65.78 -0.24 3.00 16 11 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 12 C -0.15 -2.35 6.65 -24.90 -0.17 -2.52 16 13 C 0.10 1.22 6.48 -3.06 -0.02 1.20 16 14 N -0.62 -9.00 3.34 -170.26 -0.57 -9.57 16 15 C 0.53 7.76 7.85 -10.98 -0.09 7.67 16 16 O -0.54 -9.88 16.31 5.56 0.09 -9.79 16 17 C -0.10 -1.11 4.90 -29.04 -0.14 -1.25 16 18 C -0.10 -1.07 4.33 -100.94 -0.44 -1.51 16 19 C -0.15 -1.57 9.37 -35.90 -0.34 -1.90 16 20 C -0.09 -0.76 6.11 -28.18 -0.17 -0.93 16 21 C -0.12 -0.96 6.01 -26.52 -0.16 -1.11 16 22 C -0.12 -1.09 6.01 -26.51 -0.16 -1.25 16 23 C -0.08 -0.80 5.80 -28.17 -0.16 -0.96 16 24 C 0.10 1.63 6.55 -2.35 -0.02 1.61 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.36 8.19 5.57 -40.82 -0.23 7.97 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.85 7.80 -51.93 -0.41 0.45 16 32 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.10 1.00 7.74 -52.48 -0.41 0.59 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 43 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -32.04 344.30 -9.22 -41.26 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.38 Total: 5.58 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.35 Total: -4.74 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.05 Total: -54.47 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.04 -9.22 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967751903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.512 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds