Wall clock time and date at job start Tue Mar 31 2020 00:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48498 * 109.46898 * 239.99753 * 3 2 1 5 5 H 1.48499 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47292 * 119.99314 * 3 2 1 7 7 C 1.38811 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99858 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00354 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.63543 * 31.85747 * 10 9 7 12 12 C 1.55158 * 110.72183 * 268.52682 * 10 9 7 13 13 C 1.55127 * 101.48299 * 205.96691 * 12 10 9 14 14 N 1.47420 * 104.72474 * 37.29345 * 13 12 10 15 15 C 1.34779 * 125.64744 * 155.81614 * 14 13 12 16 16 O 1.21279 * 119.99955 * 179.69381 * 15 14 13 17 17 C 1.50703 * 119.99869 * 359.69158 * 15 14 13 18 18 C 1.52997 * 109.46926 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.24705 * 304.65230 * 18 17 15 20 20 C 1.50070 * 109.36000 * 64.31041 * 18 17 15 21 21 C 1.29172 * 123.99416 * 137.29428 * 20 18 17 22 22 C 1.50070 * 124.28199 * 359.61667 * 21 20 18 23 23 C 1.53024 * 110.03521 * 17.04512 * 22 21 20 24 24 C 1.53019 * 109.35812 * 185.00193 * 18 17 15 25 25 C 1.47021 * 108.70384 * 335.55310 * 14 13 12 26 26 H 0.97006 * 120.00018 * 0.02562 * 1 2 3 27 27 H 0.97006 * 120.00172 * 0.02562 * 9 7 2 28 28 H 1.08998 * 110.99947 * 324.20360 * 12 10 9 29 29 H 1.08998 * 111.00202 * 88.01915 * 12 10 9 30 30 H 1.08994 * 110.49502 * 278.44571 * 13 12 10 31 31 H 1.09001 * 110.33961 * 156.05779 * 13 12 10 32 32 H 1.09000 * 109.46688 * 60.00154 * 17 15 14 33 33 H 1.08998 * 109.47428 * 300.00071 * 17 15 14 34 34 H 1.07999 * 117.96134 * 317.36038 * 20 18 17 35 35 H 1.08001 * 117.75277 * 179.61802 * 21 20 18 36 36 H 1.09002 * 109.35777 * 256.90530 * 22 21 20 37 37 H 1.08998 * 109.35386 * 137.18228 * 22 21 20 38 38 H 1.08995 * 109.64445 * 70.32309 * 23 22 21 39 39 H 1.08998 * 109.64016 * 190.94942 * 23 22 21 40 40 H 1.08997 * 109.64626 * 70.67357 * 24 18 17 41 41 H 1.09001 * 109.81915 * 310.14490 * 24 18 17 42 42 H 1.08996 * 109.88002 * 120.70639 * 25 14 13 43 43 H 1.08998 * 109.87937 * 241.86974 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0001 -3.5560 0.5408 12 6 2.3014 -4.1515 -1.4486 13 6 2.4230 -5.6833 -1.2361 14 7 1.4368 -5.9953 -0.1857 15 6 0.8551 -7.1946 0.0143 16 8 0.0580 -7.3389 0.9169 17 6 1.1951 -8.3561 -0.8837 18 6 0.4038 -9.5894 -0.4438 19 1 0.6013 -9.7860 0.6100 20 6 -1.0625 -9.3344 -0.6360 21 6 -1.8876 -10.1984 -1.1273 22 6 -1.4987 -11.5743 -1.5830 23 6 -0.1319 -11.9506 -1.0069 24 6 0.8423 -10.7966 -1.2756 25 6 1.1977 -4.7834 0.6115 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 1.4551 -3.9089 -2.0913 29 1 3.2264 -3.7395 -1.8520 30 1 3.4276 -5.9437 -0.9028 31 1 2.1782 -6.2141 -2.1561 32 1 2.2624 -8.5667 -0.8168 33 1 0.9377 -8.1070 -1.9132 34 1 -1.4508 -8.3690 -0.3466 35 1 -2.9246 -9.9099 -1.2153 36 1 -1.4498 -11.5940 -2.6717 37 1 -2.2447 -12.2921 -1.2418 38 1 -0.2194 -12.1138 0.0672 39 1 0.2321 -12.8574 -1.4898 40 1 1.8505 -11.0937 -0.9871 41 1 0.8246 -10.5414 -2.3352 42 1 0.1433 -4.5112 0.5650 43 1 1.4928 -4.9563 1.6465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969063772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:19 Heat of formation + Delta-G solvation = -21.774842 kcal Electronic energy + Delta-G solvation = -21517.702496 eV Core-core repulsion = 18369.547110 eV Total energy + Delta-G solvation = -3148.155386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09161 -38.59159 -37.11945 -34.13281 -32.80240 -31.47327 -31.12823 -29.52416 -28.39496 -26.74439 -23.81338 -22.88881 -22.42095 -21.95303 -20.05640 -18.93036 -18.05946 -17.40962 -16.91799 -16.06389 -15.88016 -15.34267 -14.75343 -14.39291 -14.26118 -13.64824 -13.51858 -13.32851 -13.06247 -12.80814 -12.74357 -12.53332 -12.23026 -12.14491 -11.87635 -11.67084 -11.52429 -11.19703 -11.03464 -10.84673 -10.73911 -10.67792 -10.34235 -10.22916 -10.12710 -9.77911 -9.51019 -9.03192 -8.98160 -8.37253 -7.06453 -5.83467 -3.14316 2.31933 2.82522 3.19454 3.40309 3.44987 3.46109 4.46609 4.53286 4.56204 4.60252 4.77814 4.99991 5.04207 5.10207 5.21081 5.27527 5.34723 5.36324 5.43072 5.51971 5.53466 5.56103 5.58422 5.63337 5.72628 5.75712 5.78203 5.91346 5.96388 6.12972 6.17368 6.22990 6.26262 6.37488 6.57293 6.60914 6.70195 6.88572 6.96409 7.62869 7.77167 8.33421 8.37591 9.45148 9.99575 10.34229 11.38642 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043705 B = 0.002988 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.508612 B = 9367.870424 C = 9642.847188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.171 3.829 11 H 0.066 0.934 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.523 3.477 16 O -0.544 6.544 17 C -0.128 4.128 18 C -0.043 4.043 19 H 0.087 0.913 20 C -0.132 4.132 21 C -0.174 4.174 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.099 3.901 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -22.267 -5.058 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.422 6.422 17 C -0.168 4.168 18 C -0.062 4.062 19 H 0.105 0.895 20 C -0.149 4.149 21 C -0.192 4.192 22 C -0.125 4.125 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.024 4.024 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.759 -22.225 -4.539 22.851 hybrid contribution 0.107 1.114 -0.090 1.122 sum 2.866 -21.111 -4.629 21.802 Atomic orbital electron populations 1.69657 1.05180 1.26027 1.56899 1.24781 0.95526 0.97839 1.02506 0.86239 0.78519 0.83339 0.77881 1.21178 1.21651 1.21157 1.19179 0.91019 0.83846 1.43703 0.91001 1.42366 1.05814 0.99393 1.87988 1.21192 0.94581 0.85733 0.92538 0.91575 1.23605 1.02722 0.91736 1.01583 1.22434 0.91790 0.97980 0.90312 1.48553 1.43144 1.09972 1.33187 1.20314 0.80565 0.82749 0.85215 1.90688 1.34747 1.83311 1.33435 1.21676 1.01812 0.93245 1.00067 1.19847 0.92702 0.92966 1.00685 0.89481 1.22156 0.94668 0.99976 0.98148 1.21928 0.99323 0.95783 1.02129 1.20425 0.96916 0.94893 1.00314 1.21592 0.95114 0.97719 1.01306 1.21666 0.98782 0.94714 1.00154 1.22332 1.01287 0.84086 0.94719 0.93277 0.77948 0.90666 0.90579 0.91638 0.91345 0.88909 0.88963 0.86968 0.88285 0.91246 0.91477 0.91717 0.91797 0.91625 0.91576 0.91235 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.45 5.22 -51.65 -0.27 -17.72 16 10 C 0.17 3.26 3.61 -66.10 -0.24 3.03 16 11 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 12 C -0.16 -2.47 6.78 -24.46 -0.17 -2.64 16 13 C 0.10 1.24 6.70 -2.41 -0.02 1.22 16 14 N -0.61 -9.40 3.32 -170.39 -0.57 -9.97 16 15 C 0.52 7.91 7.48 -10.98 -0.08 7.83 16 16 O -0.54 -10.13 14.57 5.56 0.08 -10.05 16 17 C -0.13 -1.37 4.15 -27.88 -0.12 -1.49 16 18 C -0.04 -0.47 2.12 -92.07 -0.19 -0.67 16 19 H 0.09 1.05 7.96 -51.93 -0.41 0.64 16 20 C -0.13 -1.63 8.40 -35.83 -0.30 -1.93 16 21 C -0.17 -1.87 9.78 -35.83 -0.35 -2.22 16 22 C -0.09 -0.75 6.13 -28.18 -0.17 -0.92 16 23 C -0.12 -0.95 6.01 -26.51 -0.16 -1.11 16 24 C -0.12 -0.95 5.30 -26.52 -0.14 -1.09 16 25 C 0.10 1.78 6.62 -3.07 -0.02 1.76 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.39 10.17 7.56 -40.82 -0.31 9.87 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.71 7.48 -51.93 -0.39 0.33 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 34 H 0.11 1.68 6.47 -52.49 -0.34 1.34 16 35 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.55 8.12 -51.93 -0.42 0.12 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -30.98 342.40 -9.39 -40.37 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.29 Total: 7.72 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.20 Total: -5.37 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.11 Total: -54.71 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.98 -9.39 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969063772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.596 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds