Wall clock time and date at job start Tue Mar 31 2020 00:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48498 * 109.46898 * 239.99753 * 3 2 1 5 5 H 1.48499 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47292 * 119.99314 * 3 2 1 7 7 C 1.38811 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99858 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00354 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.63543 * 31.85747 * 10 9 7 12 12 C 1.55158 * 110.72183 * 268.52682 * 10 9 7 13 13 C 1.55127 * 101.48299 * 205.96691 * 12 10 9 14 14 N 1.47420 * 104.72474 * 37.29345 * 13 12 10 15 15 C 1.34779 * 125.64744 * 155.81614 * 14 13 12 16 16 O 1.21279 * 119.99955 * 179.69381 * 15 14 13 17 17 C 1.50703 * 119.99869 * 359.69158 * 15 14 13 18 18 C 1.52997 * 109.46926 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.24705 * 304.65230 * 18 17 15 20 20 C 1.50070 * 109.36000 * 64.31041 * 18 17 15 21 21 C 1.29172 * 123.99416 * 137.29428 * 20 18 17 22 22 C 1.50070 * 124.28199 * 359.61667 * 21 20 18 23 23 C 1.53024 * 110.03521 * 17.04512 * 22 21 20 24 24 C 1.53019 * 109.35812 * 185.00193 * 18 17 15 25 25 C 1.47021 * 108.70384 * 335.55310 * 14 13 12 26 26 H 0.97006 * 120.00018 * 0.02562 * 1 2 3 27 27 H 0.97006 * 120.00172 * 0.02562 * 9 7 2 28 28 H 1.08998 * 110.99947 * 324.20360 * 12 10 9 29 29 H 1.08998 * 111.00202 * 88.01915 * 12 10 9 30 30 H 1.08994 * 110.49502 * 278.44571 * 13 12 10 31 31 H 1.09001 * 110.33961 * 156.05779 * 13 12 10 32 32 H 1.09000 * 109.46688 * 60.00154 * 17 15 14 33 33 H 1.08998 * 109.47428 * 300.00071 * 17 15 14 34 34 H 1.07999 * 117.96134 * 317.36038 * 20 18 17 35 35 H 1.08001 * 117.75277 * 179.61802 * 21 20 18 36 36 H 1.09002 * 109.35777 * 256.90530 * 22 21 20 37 37 H 1.08998 * 109.35386 * 137.18228 * 22 21 20 38 38 H 1.08995 * 109.64445 * 70.32309 * 23 22 21 39 39 H 1.08998 * 109.64016 * 190.94942 * 23 22 21 40 40 H 1.08997 * 109.64626 * 70.67357 * 24 18 17 41 41 H 1.09001 * 109.81915 * 310.14490 * 24 18 17 42 42 H 1.08996 * 109.88002 * 120.70639 * 25 14 13 43 43 H 1.08998 * 109.87937 * 241.86974 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0001 -3.5560 0.5408 12 6 2.3014 -4.1515 -1.4486 13 6 2.4230 -5.6833 -1.2361 14 7 1.4368 -5.9953 -0.1857 15 6 0.8551 -7.1946 0.0143 16 8 0.0580 -7.3389 0.9169 17 6 1.1951 -8.3561 -0.8837 18 6 0.4038 -9.5894 -0.4438 19 1 0.6013 -9.7860 0.6100 20 6 -1.0625 -9.3344 -0.6360 21 6 -1.8876 -10.1984 -1.1273 22 6 -1.4987 -11.5743 -1.5830 23 6 -0.1319 -11.9506 -1.0069 24 6 0.8423 -10.7966 -1.2756 25 6 1.1977 -4.7834 0.6115 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0002 28 1 1.4551 -3.9089 -2.0913 29 1 3.2264 -3.7395 -1.8520 30 1 3.4276 -5.9437 -0.9028 31 1 2.1782 -6.2141 -2.1561 32 1 2.2624 -8.5667 -0.8168 33 1 0.9377 -8.1070 -1.9132 34 1 -1.4508 -8.3690 -0.3466 35 1 -2.9246 -9.9099 -1.2153 36 1 -1.4498 -11.5940 -2.6717 37 1 -2.2447 -12.2921 -1.2418 38 1 -0.2194 -12.1138 0.0672 39 1 0.2321 -12.8574 -1.4898 40 1 1.8505 -11.0937 -0.9871 41 1 0.8246 -10.5414 -2.3352 42 1 0.1433 -4.5112 0.5650 43 1 1.4928 -4.9563 1.6465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969063772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:19 Heat of formation + Delta-G solvation = -40.392167 kcal Electronic energy + Delta-G solvation = -21518.509804 eV Core-core repulsion = 18369.547110 eV Total energy + Delta-G solvation = -3148.962694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24958 -39.56198 -38.39894 -35.91802 -33.77713 -33.14830 -31.87984 -31.00205 -29.71942 -27.87659 -25.59642 -24.19552 -23.16219 -22.83789 -21.57110 -20.10096 -19.36445 -18.84425 -18.07578 -17.27417 -16.92034 -16.54019 -16.42403 -15.62410 -15.35997 -15.08219 -14.79329 -14.64055 -14.12377 -13.97522 -13.68837 -13.52808 -13.23618 -13.20824 -13.09645 -12.98955 -12.91959 -12.64431 -12.39529 -12.34976 -12.15731 -11.77408 -11.71628 -11.65151 -11.40461 -11.04183 -10.93815 -10.67298 -9.88916 -9.65397 -9.06176 -7.95839 -5.26613 1.42355 1.48461 1.51710 1.57643 1.65682 1.99845 2.56687 3.35233 3.51712 3.76651 3.79986 3.81957 3.89908 4.00932 4.09320 4.27987 4.30058 4.39816 4.42905 4.48916 4.51997 4.54780 4.67499 4.73030 4.80818 4.83605 4.88440 4.91748 5.01808 5.09880 5.12242 5.21145 5.25166 5.28040 5.44305 5.44658 5.52272 5.52667 5.81296 6.10685 6.24297 6.59115 7.18108 7.30400 8.02408 8.26178 9.27629 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043705 B = 0.002988 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.508612 B = 9367.870424 C = 9642.847188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.977 3.023 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.732 5.732 10 C 0.165 3.835 11 H 0.073 0.927 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.515 3.485 16 O -0.589 6.589 17 C -0.117 4.117 18 C -0.041 4.041 19 H 0.067 0.933 20 C -0.156 4.156 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.109 4.109 25 C 0.108 3.892 26 H 0.251 0.749 27 H 0.370 0.630 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -24.561 -6.866 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.351 5.351 15 C 0.306 3.694 16 O -0.469 6.469 17 C -0.156 4.156 18 C -0.060 4.060 19 H 0.085 0.915 20 C -0.174 4.174 21 C -0.183 4.183 22 C -0.125 4.125 23 C -0.158 4.158 24 C -0.147 4.147 25 C -0.017 4.017 26 H 0.059 0.941 27 H 0.202 0.798 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.480 -24.571 -6.372 25.969 hybrid contribution -0.778 1.738 0.511 1.972 sum 4.702 -22.833 -5.861 24.038 Atomic orbital electron populations 1.69836 1.06882 1.26210 1.59401 1.25635 0.96325 1.01388 1.03609 0.85164 0.77094 0.78846 0.78356 1.19919 1.22643 1.20321 1.19629 0.91696 0.84704 1.41229 0.89739 1.42565 1.05318 1.00842 1.88419 1.21409 0.94145 0.83943 0.94984 0.90923 1.23406 1.02517 0.94465 0.98313 1.22602 0.92581 0.95408 0.90977 1.48670 1.43836 1.09137 1.33408 1.21273 0.79466 0.83456 0.85165 1.90673 1.36613 1.84038 1.35619 1.21744 1.03697 0.90763 0.99421 1.19837 0.91505 0.94391 1.00231 0.91471 1.22066 0.96316 0.98950 1.00091 1.22174 0.98886 0.96821 1.00383 1.20500 0.97744 0.93110 1.01194 1.21627 0.94671 0.98587 1.00938 1.21657 0.99676 0.93196 1.00126 1.21987 0.99175 0.85471 0.95035 0.94060 0.79769 0.92747 0.89106 0.88494 0.87949 0.85535 0.87148 0.90758 0.88726 0.89725 0.90482 0.92701 0.89536 0.89736 0.90444 0.94387 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.98 45.44 29.55 68.60 2.03 47.46 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.24 -13.02 9.96 84.03 0.84 -12.18 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.73 -36.60 5.22 -317.33 -1.66 -38.26 16 10 C 0.16 6.25 3.61 46.18 0.17 6.42 16 11 H 0.07 2.67 8.09 -2.38 -0.02 2.65 16 12 C -0.15 -4.40 6.78 32.06 0.22 -4.18 16 13 C 0.11 2.31 6.70 86.93 0.58 2.89 16 14 N -0.62 -18.22 3.32 -811.38 -2.70 -20.92 16 15 C 0.52 15.32 7.48 87.66 0.66 15.97 16 16 O -0.59 -22.88 14.57 -3.03 -0.04 -22.92 16 17 C -0.12 -2.19 4.15 29.85 0.12 -2.06 16 18 C -0.04 -0.83 2.12 -11.73 -0.02 -0.85 16 19 H 0.07 1.61 7.96 -2.39 -0.02 1.59 16 20 C -0.16 -3.90 8.40 27.30 0.23 -3.67 16 21 C -0.16 -3.45 9.78 27.30 0.27 -3.18 16 22 C -0.09 -1.28 6.13 29.66 0.18 -1.10 16 23 C -0.12 -1.55 6.01 30.73 0.18 -1.37 16 24 C -0.11 -1.41 5.30 30.73 0.16 -1.25 16 25 C 0.11 3.98 6.62 86.73 0.57 4.56 16 26 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 27 H 0.37 20.52 7.56 -92.70 -0.70 19.82 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 1.62 7.48 -2.39 -0.02 1.61 16 32 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.72 7.85 -2.39 -0.02 1.71 16 34 H 0.07 2.40 6.47 -2.91 -0.02 2.38 16 35 H 0.09 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 42 H 0.04 1.63 7.72 -2.39 -0.02 1.61 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.14 342.40 2.81 -68.33 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.28 Total: 29.94 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.62 Total: -3.94 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.07 Total: -118.87 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.14 2.81 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969063772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.933 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds