Wall clock time and date at job start Tue Mar 31 2020 00:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48497 * 109.46932 * 269.99799 * 3 2 1 5 5 H 1.48494 * 109.46964 * 30.00287 * 3 2 1 6 6 H 1.48508 * 109.46843 * 150.00108 * 3 2 1 7 7 C 1.38812 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00147 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00136 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00670 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.77412 * 31.76238 * 10 9 7 12 12 C 1.55443 * 110.70886 * 268.55389 * 10 9 7 13 13 C 1.54910 * 101.45144 * 206.13875 * 12 10 9 14 14 N 1.47430 * 104.92730 * 37.00455 * 13 12 10 15 15 C 1.34776 * 125.64889 * 155.79700 * 14 13 12 16 16 O 1.21277 * 119.99783 * 179.97438 * 15 14 13 17 17 C 1.50698 * 120.00032 * 359.97438 * 15 14 13 18 18 H 1.09010 * 110.05401 * 337.50158 * 17 15 14 19 19 C 1.54390 * 110.07118 * 216.01914 * 17 15 14 20 20 C 1.54913 * 104.22439 * 217.21669 * 19 17 15 21 21 C 1.54994 * 102.82189 * 37.71806 * 20 19 17 22 22 C 1.53478 * 110.07292 * 99.04915 * 17 15 14 23 23 C 1.52550 * 121.08565 * 335.13993 * 22 17 15 24 24 C 1.52576 * 121.04996 * 263.43276 * 22 17 15 25 25 C 1.47024 * 108.70290 * 335.81526 * 14 13 12 26 26 H 0.97005 * 119.99439 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00185 * 0.02562 * 9 7 2 28 28 H 1.09005 * 111.12222 * 88.08870 * 12 10 9 29 29 H 1.08996 * 111.01661 * 324.14419 * 12 10 9 30 30 H 1.08999 * 110.36937 * 278.10824 * 13 12 10 31 31 H 1.09003 * 110.36819 * 155.89592 * 13 12 10 32 32 H 1.08999 * 110.47805 * 335.90079 * 19 17 15 33 33 H 1.09007 * 110.48180 * 98.52958 * 19 17 15 34 34 H 1.09002 * 110.74387 * 156.04716 * 20 19 17 35 35 H 1.08996 * 110.74785 * 279.20390 * 20 19 17 36 36 H 1.08999 * 110.51019 * 81.06862 * 21 20 19 37 37 H 1.09005 * 110.51291 * 203.64771 * 21 20 19 38 38 H 1.09001 * 117.51307 * 357.04323 * 23 22 17 39 39 H 1.09006 * 117.51046 * 142.11621 * 23 22 17 40 40 H 1.08997 * 117.51056 * 217.94301 * 24 22 17 41 41 H 1.09001 * 117.50832 * 2.98554 * 24 22 17 42 42 H 1.08995 * 109.88379 * 120.47291 * 25 14 13 43 43 H 1.08997 * 109.88079 * 241.64548 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5547 -3.2392 -0.5372 12 6 4.4192 -2.9284 1.4524 13 6 5.6858 -3.7948 1.2410 14 7 6.4481 -3.1021 0.1861 15 6 7.7775 -3.1974 -0.0136 16 8 8.3007 -2.5801 -0.9169 17 6 8.6139 -4.0709 0.8856 18 1 8.1048 -4.2234 1.8374 19 6 9.9942 -3.4206 1.1214 20 6 10.9791 -4.6161 1.1454 21 6 10.4064 -5.5555 0.0535 22 6 8.8813 -5.4215 0.2076 23 6 7.9369 -5.9685 -0.8582 24 6 8.0173 -6.6410 0.5146 25 6 5.5177 -2.2900 -0.6117 26 1 -0.4849 0.8401 -0.0004 27 1 3.8646 -0.3623 -0.0007 28 1 3.6015 -3.5243 1.8578 29 1 4.6332 -2.0737 2.0942 30 1 5.4096 -4.7971 0.9136 31 1 6.2694 -3.8443 2.1603 32 1 10.2397 -2.7406 0.3057 33 1 10.0098 -2.8944 2.0759 34 1 11.9867 -4.2915 0.8856 35 1 10.9713 -5.1033 2.1204 36 1 10.7206 -5.2260 -0.9368 37 1 10.7215 -6.5838 0.2308 38 1 7.0417 -5.3887 -1.0833 39 1 8.3817 -6.4943 -1.7032 40 1 8.5151 -7.6089 0.5729 41 1 7.1755 -6.5036 1.1933 42 1 5.8091 -1.2406 -0.5664 43 1 5.5195 -2.6331 -1.6462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969080113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:51 Heat of formation + Delta-G solvation = -0.119508 kcal Electronic energy + Delta-G solvation = -22324.909296 eV Core-core repulsion = 19177.692956 eV Total energy + Delta-G solvation = -3147.216340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64768 -38.59577 -37.13004 -34.41875 -34.17652 -31.70547 -30.05796 -29.55726 -27.83697 -25.96818 -23.69688 -22.79243 -22.53615 -21.20835 -20.29274 -19.99370 -18.19533 -17.76790 -17.14005 -16.33602 -15.79038 -15.43623 -14.90146 -14.53373 -14.10610 -13.99018 -13.73397 -13.25434 -12.95916 -12.82799 -12.57885 -12.48832 -12.01612 -11.99747 -11.77455 -11.65333 -11.46749 -11.28923 -11.06751 -10.93154 -10.78238 -10.75292 -10.50471 -10.44535 -10.17477 -10.12390 -9.66899 -9.44562 -9.01907 -8.48181 -7.38141 -5.84876 -3.22376 2.70559 3.02771 3.34310 3.37922 3.42502 3.59082 4.13792 4.38319 4.52893 4.54801 4.63304 4.76700 4.91239 4.95111 5.01150 5.06987 5.21498 5.26558 5.38466 5.41032 5.47077 5.50581 5.54279 5.61785 5.63498 5.68120 5.78361 5.79444 5.84137 5.85963 5.89324 5.95110 5.97852 6.11781 6.17513 6.24746 6.46660 6.48844 6.74687 7.66256 7.89079 8.29198 8.33651 9.10217 9.82844 10.01020 11.32826 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033164 B = 0.003966 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.086222 B = 7057.631236 C = 7448.401384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.739 5.739 10 C 0.177 3.823 11 H 0.076 0.924 12 C -0.154 4.154 13 C 0.098 3.902 14 N -0.613 5.613 15 C 0.535 3.465 16 O -0.542 6.542 17 C -0.074 4.074 18 H 0.091 0.909 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.168 4.168 24 C -0.164 4.164 25 C 0.097 3.903 26 H 0.261 0.739 27 H 0.363 0.637 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 -13.338 4.067 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.196 4.196 13 C -0.026 4.026 14 N -0.347 5.347 15 C 0.323 3.677 16 O -0.420 6.420 17 C -0.096 4.096 18 H 0.109 0.891 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.205 4.205 24 C -0.201 4.201 25 C -0.027 4.027 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.055 -13.041 3.546 24.184 hybrid contribution 0.326 1.224 0.112 1.272 sum 20.381 -11.816 3.658 23.841 Atomic orbital electron populations 1.69699 1.05114 1.26014 1.56866 1.24664 0.95223 0.97255 1.01560 0.86582 0.79216 0.84938 0.77981 1.20878 1.21586 1.20313 1.19045 0.80192 0.94865 1.43883 0.88966 1.42716 1.04183 1.01519 1.89659 1.21206 0.89264 0.90127 0.92798 0.90652 1.23584 0.95335 0.99479 1.01162 1.22431 0.93507 0.96330 0.90299 1.48550 1.06294 1.46921 1.32945 1.20131 0.80661 0.81760 0.85141 1.90666 1.71363 1.46737 1.33212 1.21418 0.96863 0.93159 0.98132 0.89066 1.22368 0.91969 0.97976 1.02700 1.22436 0.98503 0.95865 0.98844 1.21865 0.91369 0.99547 0.99536 1.21488 0.93882 0.92785 1.03516 1.22989 1.01340 1.03521 0.92678 1.23055 1.01855 0.95961 0.99257 1.22336 0.89721 0.95560 0.95069 0.92903 0.80325 0.90041 0.90792 0.91519 0.91270 0.89651 0.91243 0.91201 0.91326 0.90929 0.91459 0.88561 0.88581 0.88525 0.88566 0.91573 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.97 55.49 0.78 -27.84 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 7 C -0.25 -6.81 10.44 -15.06 -0.16 -6.97 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.74 -16.89 5.03 -51.50 -0.26 -17.15 16 10 C 0.18 3.23 3.62 -65.94 -0.24 2.99 16 11 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 12 C -0.15 -2.36 6.79 -24.43 -0.17 -2.53 16 13 C 0.10 1.20 6.62 -2.53 -0.02 1.18 16 14 N -0.61 -9.04 3.21 -170.52 -0.55 -9.59 16 15 C 0.53 8.06 5.51 -10.99 -0.06 8.00 16 16 O -0.54 -10.15 16.19 5.56 0.09 -10.06 16 17 C -0.07 -0.85 2.85 -90.80 -0.26 -1.10 16 18 H 0.09 0.91 6.32 -51.92 -0.33 0.59 16 19 C -0.11 -1.18 6.33 -24.99 -0.16 -1.33 16 20 C -0.12 -0.98 6.91 -24.67 -0.17 -1.15 16 21 C -0.09 -0.76 6.58 -25.23 -0.17 -0.93 16 22 C -0.12 -1.17 2.26 -154.26 -0.35 -1.52 16 23 C -0.17 -1.78 9.63 -26.92 -0.26 -2.04 16 24 C -0.16 -1.41 10.24 -26.91 -0.28 -1.69 16 25 C 0.10 1.64 6.62 -3.06 -0.02 1.62 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.36 8.33 5.43 -40.82 -0.22 8.11 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.72 6.71 -51.93 -0.35 0.37 16 32 H 0.08 1.08 6.98 -51.93 -0.36 0.72 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.10 1.19 7.20 -51.93 -0.37 0.82 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.21 7.72 -51.93 -0.40 0.81 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -31.80 339.27 -9.05 -40.85 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.12 Total: 6.84 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.39 Total: -5.30 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.03 Total: -54.58 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.80 -9.05 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969080113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.732 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds