Wall clock time and date at job start Tue Mar 31 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48497 * 109.46932 * 269.99799 * 3 2 1 5 5 H 1.48494 * 109.46964 * 30.00287 * 3 2 1 6 6 H 1.48508 * 109.46843 * 150.00108 * 3 2 1 7 7 C 1.38812 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00147 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00136 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00670 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.77412 * 31.76238 * 10 9 7 12 12 C 1.55443 * 110.70886 * 268.55389 * 10 9 7 13 13 C 1.54910 * 101.45144 * 206.13875 * 12 10 9 14 14 N 1.47430 * 104.92730 * 37.00455 * 13 12 10 15 15 C 1.34776 * 125.64889 * 155.79700 * 14 13 12 16 16 O 1.21277 * 119.99783 * 179.97438 * 15 14 13 17 17 C 1.50698 * 120.00032 * 359.97438 * 15 14 13 18 18 H 1.09010 * 110.05401 * 337.50158 * 17 15 14 19 19 C 1.54390 * 110.07118 * 216.01914 * 17 15 14 20 20 C 1.54913 * 104.22439 * 217.21669 * 19 17 15 21 21 C 1.54994 * 102.82189 * 37.71806 * 20 19 17 22 22 C 1.53478 * 110.07292 * 99.04915 * 17 15 14 23 23 C 1.52550 * 121.08565 * 335.13993 * 22 17 15 24 24 C 1.52576 * 121.04996 * 263.43276 * 22 17 15 25 25 C 1.47024 * 108.70290 * 335.81526 * 14 13 12 26 26 H 0.97005 * 119.99439 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00185 * 0.02562 * 9 7 2 28 28 H 1.09005 * 111.12222 * 88.08870 * 12 10 9 29 29 H 1.08996 * 111.01661 * 324.14419 * 12 10 9 30 30 H 1.08999 * 110.36937 * 278.10824 * 13 12 10 31 31 H 1.09003 * 110.36819 * 155.89592 * 13 12 10 32 32 H 1.08999 * 110.47805 * 335.90079 * 19 17 15 33 33 H 1.09007 * 110.48180 * 98.52958 * 19 17 15 34 34 H 1.09002 * 110.74387 * 156.04716 * 20 19 17 35 35 H 1.08996 * 110.74785 * 279.20390 * 20 19 17 36 36 H 1.08999 * 110.51019 * 81.06862 * 21 20 19 37 37 H 1.09005 * 110.51291 * 203.64771 * 21 20 19 38 38 H 1.09001 * 117.51307 * 357.04323 * 23 22 17 39 39 H 1.09006 * 117.51046 * 142.11621 * 23 22 17 40 40 H 1.08997 * 117.51056 * 217.94301 * 24 22 17 41 41 H 1.09001 * 117.50832 * 2.98554 * 24 22 17 42 42 H 1.08995 * 109.88379 * 120.47291 * 25 14 13 43 43 H 1.08997 * 109.88079 * 241.64548 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.5547 -3.2392 -0.5372 12 6 4.4192 -2.9284 1.4524 13 6 5.6858 -3.7948 1.2410 14 7 6.4481 -3.1021 0.1861 15 6 7.7775 -3.1974 -0.0136 16 8 8.3007 -2.5801 -0.9169 17 6 8.6139 -4.0709 0.8856 18 1 8.1048 -4.2234 1.8374 19 6 9.9942 -3.4206 1.1214 20 6 10.9791 -4.6161 1.1454 21 6 10.4064 -5.5555 0.0535 22 6 8.8813 -5.4215 0.2076 23 6 7.9369 -5.9685 -0.8582 24 6 8.0173 -6.6410 0.5146 25 6 5.5177 -2.2900 -0.6117 26 1 -0.4849 0.8401 -0.0004 27 1 3.8646 -0.3623 -0.0007 28 1 3.6015 -3.5243 1.8578 29 1 4.6332 -2.0737 2.0942 30 1 5.4096 -4.7971 0.9136 31 1 6.2694 -3.8443 2.1603 32 1 10.2397 -2.7406 0.3057 33 1 10.0098 -2.8944 2.0759 34 1 11.9867 -4.2915 0.8856 35 1 10.9713 -5.1033 2.1204 36 1 10.7206 -5.2260 -0.9368 37 1 10.7215 -6.5838 0.2308 38 1 7.0417 -5.3887 -1.0833 39 1 8.3817 -6.4943 -1.7032 40 1 8.5151 -7.6089 0.5729 41 1 7.1755 -6.5036 1.1933 42 1 5.8091 -1.2406 -0.5664 43 1 5.5195 -2.6331 -1.6462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969080113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:50 Heat of formation + Delta-G solvation = -19.559833 kcal Electronic energy + Delta-G solvation = -22325.752292 eV Core-core repulsion = 19177.692956 eV Total energy + Delta-G solvation = -3148.059336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69180 -39.66616 -38.39250 -36.06875 -35.03298 -33.59151 -31.50070 -30.60493 -29.15294 -26.79640 -25.35016 -24.15914 -23.34435 -22.14730 -21.64659 -21.00505 -19.77494 -19.16295 -18.27765 -17.52184 -16.78022 -16.65757 -16.09322 -15.78113 -15.65283 -15.34079 -14.79340 -14.67401 -14.41361 -13.86458 -13.72286 -13.55581 -13.46266 -13.28359 -13.19913 -12.80390 -12.59366 -12.38915 -12.28859 -12.15626 -11.97106 -11.85113 -11.81348 -11.72204 -11.51838 -11.16649 -11.13448 -11.01351 -10.42734 -9.72917 -9.36885 -8.05265 -5.39817 1.36366 1.38475 1.44800 1.55723 1.88071 2.45182 2.80668 3.24492 3.35732 3.49855 3.55481 3.63213 3.77839 3.87445 3.95697 4.06587 4.19871 4.27148 4.28093 4.32599 4.41119 4.44346 4.63859 4.66570 4.76788 4.77777 4.81680 4.91946 4.92706 5.01909 5.03778 5.10641 5.17503 5.19359 5.23602 5.24903 5.28250 5.36556 5.47024 5.74006 6.18452 6.50343 7.02168 7.11197 7.77177 7.95010 9.15616 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033164 B = 0.003966 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.086222 B = 7057.631236 C = 7448.401384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.947 3.053 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.230 4.230 8 H 0.067 0.933 9 N -0.745 5.745 10 C 0.169 3.831 11 H 0.072 0.928 12 C -0.146 4.146 13 C 0.105 3.895 14 N -0.613 5.613 15 C 0.531 3.469 16 O -0.587 6.587 17 C -0.070 4.070 18 H 0.113 0.887 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.190 4.190 24 C -0.138 4.138 25 C 0.105 3.895 26 H 0.258 0.742 27 H 0.364 0.636 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.358 -15.011 5.951 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.249 4.249 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.360 4.360 8 H 0.085 0.915 9 N -0.388 5.388 10 C 0.060 3.940 11 H 0.090 0.910 12 C -0.186 4.186 13 C -0.017 4.017 14 N -0.346 5.346 15 C 0.321 3.679 16 O -0.468 6.468 17 C -0.091 4.091 18 H 0.131 0.869 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.227 4.227 24 C -0.175 4.175 25 C -0.019 4.019 26 H 0.067 0.933 27 H 0.197 0.803 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.481 -14.766 5.455 27.445 hybrid contribution -0.407 1.649 -0.533 1.781 sum 22.074 -13.117 4.922 26.145 Atomic orbital electron populations 1.69857 1.06921 1.26663 1.59488 1.25391 0.95983 1.00848 1.02641 0.85533 0.78594 0.80419 0.77941 1.20847 1.22022 1.18185 1.19020 0.82010 0.93729 1.41276 0.91516 1.42713 1.02776 1.03325 1.89962 1.21389 0.89314 0.88141 0.95143 0.91009 1.23405 0.97209 0.99800 0.98213 1.22555 0.92011 0.96173 0.90947 1.48626 1.06281 1.46621 1.33070 1.20918 0.80564 0.81387 0.84987 1.90644 1.72157 1.48652 1.35311 1.21516 0.96577 0.92958 0.98038 0.86876 1.22396 0.92229 0.98577 1.02195 1.22436 0.98121 0.94618 0.99637 1.21891 0.90578 1.00904 0.98998 1.21592 0.94676 0.92826 1.03465 1.22961 1.00941 1.04665 0.94105 1.23165 1.01306 0.95922 0.97110 1.22031 0.89558 0.95170 0.95186 0.93260 0.80279 0.89353 0.91680 0.89282 0.88016 0.92608 0.89897 0.90468 0.89255 0.92592 0.89358 0.90819 0.88419 0.86533 0.87505 0.93172 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.75 13.97 21.65 0.30 -61.45 16 2 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 3 Si 0.95 45.54 27.74 68.60 1.90 47.44 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 7 C -0.23 -12.65 10.44 84.03 0.88 -11.77 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.93 16 9 N -0.75 -33.91 5.03 -316.85 -1.59 -35.50 16 10 C 0.17 6.07 3.62 46.28 0.17 6.24 16 11 H 0.07 2.63 8.09 -2.38 -0.02 2.61 16 12 C -0.15 -4.16 6.79 32.09 0.22 -3.94 16 13 C 0.11 2.24 6.62 86.85 0.58 2.81 16 14 N -0.61 -17.16 3.21 -811.79 -2.61 -19.76 16 15 C 0.53 15.45 5.51 87.66 0.48 15.93 16 16 O -0.59 -22.28 16.19 -3.02 -0.05 -22.33 16 17 C -0.07 -1.40 2.85 -10.91 -0.03 -1.44 16 18 H 0.11 1.75 6.32 -2.38 -0.02 1.74 16 19 C -0.12 -2.20 6.33 31.72 0.20 -1.99 16 20 C -0.11 -1.48 6.91 31.93 0.22 -1.26 16 21 C -0.09 -1.30 6.58 31.57 0.21 -1.10 16 22 C -0.13 -2.18 2.26 -52.02 -0.12 -2.30 16 23 C -0.19 -3.68 9.63 30.47 0.29 -3.39 16 24 C -0.14 -1.83 10.24 30.48 0.31 -1.51 16 25 C 0.10 3.54 6.62 86.73 0.57 4.11 16 26 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 27 H 0.36 16.42 5.43 -92.71 -0.50 15.92 16 28 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.60 6.71 -2.39 -0.02 1.58 16 32 H 0.06 1.40 6.98 -2.39 -0.02 1.38 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.96 8.11 -2.38 -0.02 0.94 16 38 H 0.07 1.76 7.20 -2.39 -0.02 1.75 16 39 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.85 7.72 -2.39 -0.02 1.83 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.15 339.27 2.83 -68.32 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.43 Total: 25.71 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.45 Total: -2.43 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -3.90 Total: -116.71 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -71.15 2.83 -68.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969080113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.759 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds