Wall clock time and date at job start Tue Mar 31 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99728 * 2 1 4 4 H 1.48507 * 109.46836 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47194 * 299.99775 * 3 2 1 6 6 H 1.48497 * 109.47109 * 60.00463 * 3 2 1 7 7 C 1.38810 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99851 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00019 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.63701 * 31.86049 * 10 9 7 12 12 C 1.55157 * 110.87180 * 268.61493 * 10 9 7 13 13 C 1.55129 * 101.48208 * 205.89854 * 12 10 9 14 14 N 1.47427 * 104.72681 * 37.29190 * 13 12 10 15 15 C 1.34776 * 125.64726 * 155.81673 * 14 13 12 16 16 O 1.21286 * 119.99466 * 179.69379 * 15 14 13 17 17 C 1.50695 * 120.00131 * 359.69246 * 15 14 13 18 18 H 1.09000 * 110.05537 * 20.94780 * 17 15 14 19 19 C 1.54384 * 110.07195 * 142.43186 * 17 15 14 20 20 C 1.54926 * 104.22516 * 142.78831 * 19 17 15 21 21 C 1.54989 * 102.81747 * 322.27986 * 20 19 17 22 22 C 1.53476 * 110.07103 * 259.40183 * 17 15 14 23 23 C 1.52571 * 121.05757 * 96.55997 * 22 17 15 24 24 C 1.52550 * 121.08782 * 24.84533 * 22 17 15 25 25 C 1.47023 * 108.70187 * 335.55304 * 14 13 12 26 26 H 0.96995 * 119.99878 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00301 * 0.02562 * 9 7 2 28 28 H 1.08999 * 111.00015 * 324.13079 * 12 10 9 29 29 H 1.08994 * 111.00434 * 87.95252 * 12 10 9 30 30 H 1.09006 * 110.49935 * 278.45065 * 13 12 10 31 31 H 1.09004 * 110.34372 * 156.05821 * 13 12 10 32 32 H 1.09010 * 110.48056 * 24.10344 * 19 17 15 33 33 H 1.08998 * 110.48390 * 261.47798 * 19 17 15 34 34 H 1.08995 * 110.73866 * 80.60783 * 20 19 17 35 35 H 1.08997 * 110.74193 * 203.94579 * 20 19 17 36 36 H 1.08995 * 110.50967 * 156.21823 * 21 20 19 37 37 H 1.09000 * 110.50829 * 278.92161 * 21 20 19 38 38 H 1.09005 * 117.50530 * 356.96991 * 23 22 17 39 39 H 1.08995 * 117.51420 * 142.05708 * 23 22 17 40 40 H 1.09004 * 117.50872 * 217.88452 * 24 22 17 41 41 H 1.08999 * 117.51313 * 2.96948 * 24 22 17 42 42 H 1.08998 * 109.87981 * 120.69950 * 25 14 13 43 43 H 1.08994 * 109.88162 * 241.87226 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0004 -3.5563 0.5379 12 6 2.3041 -4.1531 -1.4499 13 6 2.4272 -5.6845 -1.2352 14 7 1.4398 -5.9964 -0.1858 15 6 0.8593 -7.1961 0.0148 16 8 0.0610 -7.3402 0.9165 17 6 1.2020 -8.3583 -0.8812 18 1 2.1604 -8.1835 -1.3701 19 6 1.2573 -9.6634 -0.0583 20 6 0.6614 -10.7356 -1.0045 21 6 -0.4760 -9.9661 -1.7231 22 6 0.1013 -8.5553 -1.9325 23 6 0.2369 -7.9671 -3.3337 24 6 -0.7971 -7.3983 -2.3586 25 6 1.1981 -4.7838 0.6095 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 1.4584 -3.9123 -2.0940 29 1 3.2292 -3.7405 -1.8523 30 1 3.4316 -5.9434 -0.9000 31 1 2.1844 -6.2168 -2.1549 32 1 0.6519 -9.5716 0.8435 33 1 2.2879 -9.9101 0.1967 34 1 1.4089 -11.0768 -1.7206 35 1 0.2604 -11.5736 -0.4344 36 1 -0.7053 -10.4312 -2.6818 37 1 -1.3658 -9.9254 -1.0948 38 1 1.1188 -7.3613 -3.5422 39 1 -0.1324 -8.5634 -4.1680 40 1 -1.8467 -7.6206 -2.5516 41 1 -0.5955 -6.4185 -1.9259 42 1 0.1435 -4.5128 0.5611 43 1 1.4919 -4.9550 1.6451 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969080114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:54 Heat of formation + Delta-G solvation = -4.646480 kcal Electronic energy + Delta-G solvation = -22334.537705 eV Core-core repulsion = 19187.125061 eV Total energy + Delta-G solvation = -3147.412645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56283 -38.47773 -37.01428 -34.30763 -34.05904 -31.59098 -29.72625 -29.42036 -27.53066 -25.87410 -23.78264 -22.90928 -22.46159 -21.13633 -20.25561 -19.79793 -18.09552 -17.40657 -17.03997 -16.12738 -15.69485 -15.34381 -14.88705 -14.59297 -13.90868 -13.82449 -13.54664 -13.28243 -12.99887 -12.72593 -12.53426 -12.42136 -11.91180 -11.77805 -11.61395 -11.48503 -11.23517 -11.20645 -10.99246 -10.87890 -10.74841 -10.70596 -10.34957 -10.33017 -10.11348 -10.04469 -9.77712 -9.35686 -8.99147 -8.37016 -7.06388 -5.83915 -3.14667 2.78967 3.13422 3.39498 3.45094 3.47495 3.68911 4.20958 4.45730 4.53126 4.63859 4.71675 4.86652 4.98760 5.05183 5.07809 5.24383 5.30157 5.36828 5.45131 5.49521 5.56168 5.61497 5.62719 5.67656 5.74974 5.75484 5.85798 5.88618 5.95108 5.98706 6.03952 6.08114 6.12939 6.21495 6.26697 6.37029 6.57568 6.61861 6.88020 7.63863 7.77339 8.33081 8.39141 9.44938 9.99247 10.33929 11.38311 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.003725 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.587684 B = 7515.240333 C = 7656.836306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.097 3.903 14 N -0.613 5.613 15 C 0.534 3.466 16 O -0.542 6.542 17 C -0.074 4.074 18 H 0.089 0.911 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.165 4.165 24 C -0.167 4.167 25 C 0.099 3.901 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -20.273 -5.996 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.195 4.195 13 C -0.026 4.026 14 N -0.347 5.347 15 C 0.322 3.678 16 O -0.420 6.420 17 C -0.095 4.095 18 H 0.108 0.892 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.202 4.202 24 C -0.204 4.204 25 C -0.024 4.024 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.257 -20.238 -5.465 21.214 hybrid contribution 0.197 1.123 -0.144 1.149 sum 3.453 -19.115 -5.608 20.218 Atomic orbital electron populations 1.69678 1.05170 1.25782 1.57064 1.24778 0.95522 0.97830 1.02528 0.86102 0.78776 0.83944 0.77233 1.20473 1.21802 1.21780 1.19272 0.91082 0.83821 1.43449 0.90898 1.42372 1.05816 0.99392 1.87945 1.21181 0.94571 0.85722 0.92514 0.91609 1.23596 1.02706 0.91628 1.01610 1.22469 0.91795 0.97983 0.90401 1.48555 1.43029 1.09853 1.33238 1.20121 0.80429 0.82562 0.84651 1.90668 1.34705 1.83279 1.33323 1.21398 0.98908 0.94189 0.95011 0.89235 1.22362 1.01581 0.92090 0.98890 1.22439 0.97688 0.97371 0.98138 1.21868 0.98158 0.91947 1.00349 1.21493 0.99550 0.95426 0.95315 1.23058 1.01646 1.03389 0.92116 1.23001 0.96610 0.97804 1.02958 1.22337 1.01263 0.84069 0.94776 0.93391 0.77953 0.90661 0.90587 0.91699 0.91442 0.89687 0.91294 0.91368 0.91205 0.91492 0.90894 0.88646 0.88540 0.88557 0.88407 0.91244 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.42 5.23 -51.65 -0.27 -17.69 16 10 C 0.17 3.29 3.60 -66.09 -0.24 3.05 16 11 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 12 C -0.15 -2.47 6.79 -24.46 -0.17 -2.63 16 13 C 0.10 1.26 6.27 -2.41 -0.02 1.25 16 14 N -0.61 -9.57 3.28 -170.38 -0.56 -10.13 16 15 C 0.53 8.47 5.48 -10.99 -0.06 8.41 16 16 O -0.54 -10.60 16.24 5.55 0.09 -10.51 16 17 C -0.07 -0.88 2.71 -90.80 -0.25 -1.13 16 18 H 0.09 0.94 6.78 -51.93 -0.35 0.59 16 19 C -0.11 -1.20 6.33 -24.99 -0.16 -1.35 16 20 C -0.12 -1.03 6.91 -24.66 -0.17 -1.20 16 21 C -0.09 -0.83 6.58 -25.23 -0.17 -0.99 16 22 C -0.12 -1.31 2.26 -154.26 -0.35 -1.66 16 23 C -0.17 -1.64 10.23 -26.91 -0.28 -1.91 16 24 C -0.17 -2.05 9.63 -26.92 -0.26 -2.31 16 25 C 0.10 1.79 6.62 -3.06 -0.02 1.77 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.39 10.16 7.56 -40.82 -0.31 9.85 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.76 6.20 -51.93 -0.32 0.43 16 32 H 0.08 1.09 7.02 -51.92 -0.36 0.73 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.91 6.98 -51.93 -0.36 0.55 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.10 1.45 7.26 -51.93 -0.38 1.07 16 42 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -30.97 340.79 -9.37 -40.34 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.10 Total: 8.76 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.37 Total: -5.84 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.10 Total: -54.78 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.97 -9.37 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969080114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.694 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds