Wall clock time and date at job start Tue Mar 31 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.63464 * 36.69056 * 10 9 7 12 12 C 1.55150 * 110.72358 * 273.54912 * 10 9 7 13 13 C 1.54905 * 101.58463 * 206.13221 * 12 10 9 14 14 N 1.47429 * 104.83123 * 37.00890 * 13 12 10 15 15 C 1.34772 * 125.65039 * 155.83485 * 14 13 12 16 16 O 1.21280 * 120.00125 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00188 * 0.02835 * 15 14 13 18 18 C 1.52997 * 109.47311 * 180.02562 * 17 15 14 19 19 H 1.08995 * 109.64067 * 54.57521 * 18 17 15 20 20 C 1.53026 * 109.63867 * 293.93961 * 18 17 15 21 21 C 1.50067 * 110.14386 * 190.87935 * 20 18 17 22 22 C 1.29445 * 124.07957 * 17.13682 * 21 20 18 23 23 C 1.50065 * 124.06992 * 359.52556 * 22 21 20 24 24 C 1.53016 * 110.15218 * 17.13272 * 23 22 21 25 25 C 1.47026 * 108.70311 * 335.87258 * 14 13 12 26 26 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 27 27 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 28 28 H 1.09007 * 111.00464 * 324.21212 * 12 10 9 29 29 H 1.09000 * 111.00883 * 88.05499 * 12 10 9 30 30 H 1.08996 * 110.36908 * 155.84352 * 13 12 10 31 31 H 1.08998 * 110.36688 * 278.17467 * 13 12 10 32 32 H 1.09009 * 109.46632 * 299.99702 * 17 15 14 33 33 H 1.09003 * 109.47273 * 59.99401 * 17 15 14 34 34 H 1.08992 * 109.35997 * 311.08682 * 20 18 17 35 35 H 1.09000 * 109.35722 * 70.67797 * 20 18 17 36 36 H 1.08002 * 117.96230 * 197.15710 * 21 20 18 37 37 H 1.07997 * 117.96780 * 179.51240 * 22 21 20 38 38 H 1.09002 * 109.35849 * 256.92419 * 23 22 21 39 39 H 1.09007 * 109.35832 * 137.34476 * 23 22 21 40 40 H 1.09002 * 109.64849 * 190.87415 * 24 23 22 41 41 H 1.09007 * 109.64190 * 70.24703 * 24 23 22 42 42 H 1.08995 * 109.88218 * 241.64643 * 25 14 13 43 43 H 1.08991 * 109.88449 * 120.47513 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 1 2.9585 -3.5777 0.6261 12 6 2.4103 -4.0938 -1.4294 13 6 2.5145 -5.6314 -1.2731 14 7 1.4565 -5.9853 -0.3093 15 6 0.8624 -7.1903 -0.2023 16 8 -0.0007 -7.3690 0.6308 17 6 1.2707 -8.3156 -1.1177 18 6 0.4486 -9.5636 -0.7897 19 1 -0.6139 -9.3247 -0.8348 20 6 0.8090 -10.0635 0.6110 21 6 0.2161 -11.4224 0.8432 22 6 -0.2140 -12.1970 -0.1005 23 6 -0.1893 -11.8400 -1.5579 24 6 0.7709 -10.6732 -1.7986 25 6 1.1561 -4.8056 0.5153 26 1 -0.4850 0.8400 -0.0041 27 1 0.3555 -2.3881 0.0113 28 1 1.6143 -3.8246 -2.1238 29 1 3.3626 -3.6678 -1.7454 30 1 2.3361 -6.1229 -2.2295 31 1 3.4931 -5.9074 -0.8804 32 1 1.0918 -8.0249 -2.1529 33 1 2.3301 -8.5310 -0.9786 34 1 1.8932 -10.1212 0.7061 35 1 0.4196 -9.3677 1.3542 36 1 0.1435 -11.7760 1.8611 37 1 -0.6154 -13.1600 0.1782 38 1 -1.1917 -11.5548 -1.8771 39 1 0.1396 -12.7038 -2.1359 40 1 0.6413 -10.2952 -2.8128 41 1 1.7983 -11.0091 -1.6581 42 1 1.3730 -5.0199 1.5617 43 1 0.1078 -4.5304 0.4006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969598138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:29 Heat of formation + Delta-G solvation = -22.521181 kcal Electronic energy + Delta-G solvation = -21516.000576 eV Core-core repulsion = 18367.812826 eV Total energy + Delta-G solvation = -3148.187750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09655 -38.58226 -37.11210 -34.13082 -32.90649 -31.48601 -30.88122 -29.53705 -28.43758 -26.73420 -23.79427 -23.28091 -22.74310 -21.33220 -20.02106 -18.92595 -18.09979 -17.39045 -16.83565 -16.10823 -15.91116 -15.23997 -14.82792 -14.42076 -14.22422 -13.61566 -13.45478 -13.39602 -13.17898 -12.96910 -12.56344 -12.51430 -12.30635 -12.10058 -11.92091 -11.65842 -11.58226 -11.17478 -10.85353 -10.81577 -10.73051 -10.66345 -10.37406 -10.26636 -10.11549 -9.77326 -9.52330 -9.06796 -8.97607 -8.37343 -7.05899 -5.83171 -3.14006 2.18964 2.82246 3.18322 3.40336 3.45052 3.46191 4.48207 4.50281 4.53467 4.60929 4.85499 5.00719 5.05384 5.10172 5.21672 5.27923 5.33733 5.36469 5.46119 5.53365 5.55474 5.57002 5.60825 5.67561 5.70787 5.76377 5.82489 5.96344 6.02576 6.13724 6.17624 6.25726 6.30526 6.37662 6.54319 6.58149 6.60639 6.86085 6.89829 7.63219 7.77058 8.33807 8.37778 9.45493 9.99995 10.34683 11.38998 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050141 B = 0.002907 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.294327 B = 9629.531729 C = 9826.422619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.523 3.477 16 O -0.544 6.544 17 C -0.131 4.131 18 C -0.071 4.071 19 H 0.081 0.919 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.169 4.169 23 C -0.089 4.089 24 C -0.116 4.116 25 C 0.101 3.899 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -22.182 -4.339 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.348 5.348 15 C 0.312 3.688 16 O -0.422 6.422 17 C -0.171 4.171 18 C -0.090 4.090 19 H 0.099 0.901 20 C -0.130 4.130 21 C -0.162 4.162 22 C -0.187 4.187 23 C -0.126 4.126 24 C -0.153 4.153 25 C -0.022 4.022 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.889 -22.174 -3.854 22.840 hybrid contribution 0.197 0.933 -0.042 0.954 sum 4.085 -21.241 -3.896 21.979 Atomic orbital electron populations 1.69651 1.05178 1.26024 1.56922 1.24779 0.95521 0.97829 1.02534 0.86243 0.78519 0.83358 0.77878 1.21180 1.21656 1.21167 1.19161 0.91013 0.83830 1.43654 0.91018 1.42363 1.05798 0.99381 1.88155 1.21187 0.94083 0.85710 0.93053 0.91883 1.23563 1.02664 0.91677 1.01722 1.22393 0.90402 0.97657 0.92033 1.48551 1.38867 1.10811 1.36619 1.20320 0.81404 0.82347 0.84724 1.90665 1.31997 1.82022 1.37487 1.21735 1.01818 0.93704 0.99872 1.20962 1.00575 0.92481 0.94961 0.90073 1.20637 0.99966 0.94557 0.97819 1.22117 0.99359 0.96054 0.98636 1.21991 1.02190 0.99493 0.95004 1.20409 0.99974 0.98100 0.94071 1.21680 0.99542 0.95309 0.98813 1.22259 1.00838 0.84793 0.94332 0.93280 0.77949 0.90646 0.90587 0.91339 0.91682 0.88980 0.89109 0.91454 0.89009 0.88253 0.88367 0.91016 0.91313 0.91575 0.91717 0.91756 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.45 5.25 -51.65 -0.27 -17.72 16 10 C 0.17 3.25 3.59 -66.10 -0.24 3.02 16 11 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 12 C -0.15 -2.47 6.77 -24.59 -0.17 -2.64 16 13 C 0.10 1.24 6.69 -2.53 -0.02 1.22 16 14 N -0.61 -9.31 3.33 -170.53 -0.57 -9.88 16 15 C 0.52 7.81 7.61 -10.99 -0.08 7.73 16 16 O -0.54 -9.99 14.42 5.56 0.08 -9.91 16 17 C -0.13 -1.38 4.18 -27.88 -0.12 -1.49 16 18 C -0.07 -0.75 1.87 -90.40 -0.17 -0.92 16 19 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 20 C -0.09 -1.04 5.05 -28.18 -0.14 -1.19 16 21 C -0.14 -1.47 9.80 -35.90 -0.35 -1.83 16 22 C -0.17 -1.56 9.80 -35.90 -0.35 -1.91 16 23 C -0.09 -0.73 6.12 -28.18 -0.17 -0.90 16 24 C -0.12 -0.96 5.31 -26.52 -0.14 -1.10 16 25 C 0.10 1.80 6.62 -3.06 -0.02 1.78 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.39 10.15 7.51 -40.82 -0.31 9.85 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.71 7.47 -51.93 -0.39 0.32 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.83 7.85 -51.92 -0.41 0.43 16 33 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 35 H 0.09 1.26 6.30 -51.93 -0.33 0.94 16 36 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.10 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.51 8.12 -51.92 -0.42 0.09 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.38 7.68 -51.93 -0.40 0.99 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -30.87 342.22 -9.39 -40.26 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.27 Total: 7.58 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.22 Total: -5.35 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.11 Total: -54.60 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.87 -9.39 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969598138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.739 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds