Wall clock time and date at job start Tue Mar 31 2020 00:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.63464 * 36.69056 * 10 9 7 12 12 C 1.55150 * 110.72358 * 273.54912 * 10 9 7 13 13 C 1.54905 * 101.58463 * 206.13221 * 12 10 9 14 14 N 1.47429 * 104.83123 * 37.00890 * 13 12 10 15 15 C 1.34772 * 125.65039 * 155.83485 * 14 13 12 16 16 O 1.21280 * 120.00125 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00188 * 0.02835 * 15 14 13 18 18 C 1.52997 * 109.47311 * 180.02562 * 17 15 14 19 19 H 1.08995 * 109.64067 * 54.57521 * 18 17 15 20 20 C 1.53026 * 109.63867 * 293.93961 * 18 17 15 21 21 C 1.50067 * 110.14386 * 190.87935 * 20 18 17 22 22 C 1.29445 * 124.07957 * 17.13682 * 21 20 18 23 23 C 1.50065 * 124.06992 * 359.52556 * 22 21 20 24 24 C 1.53016 * 110.15218 * 17.13272 * 23 22 21 25 25 C 1.47026 * 108.70311 * 335.87258 * 14 13 12 26 26 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 27 27 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 28 28 H 1.09007 * 111.00464 * 324.21212 * 12 10 9 29 29 H 1.09000 * 111.00883 * 88.05499 * 12 10 9 30 30 H 1.08996 * 110.36908 * 155.84352 * 13 12 10 31 31 H 1.08998 * 110.36688 * 278.17467 * 13 12 10 32 32 H 1.09009 * 109.46632 * 299.99702 * 17 15 14 33 33 H 1.09003 * 109.47273 * 59.99401 * 17 15 14 34 34 H 1.08992 * 109.35997 * 311.08682 * 20 18 17 35 35 H 1.09000 * 109.35722 * 70.67797 * 20 18 17 36 36 H 1.08002 * 117.96230 * 197.15710 * 21 20 18 37 37 H 1.07997 * 117.96780 * 179.51240 * 22 21 20 38 38 H 1.09002 * 109.35849 * 256.92419 * 23 22 21 39 39 H 1.09007 * 109.35832 * 137.34476 * 23 22 21 40 40 H 1.09002 * 109.64849 * 190.87415 * 24 23 22 41 41 H 1.09007 * 109.64190 * 70.24703 * 24 23 22 42 42 H 1.08995 * 109.88218 * 241.64643 * 25 14 13 43 43 H 1.08991 * 109.88449 * 120.47513 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 1 2.9585 -3.5777 0.6261 12 6 2.4103 -4.0938 -1.4294 13 6 2.5145 -5.6314 -1.2731 14 7 1.4565 -5.9853 -0.3093 15 6 0.8624 -7.1903 -0.2023 16 8 -0.0007 -7.3690 0.6308 17 6 1.2707 -8.3156 -1.1177 18 6 0.4486 -9.5636 -0.7897 19 1 -0.6139 -9.3247 -0.8348 20 6 0.8090 -10.0635 0.6110 21 6 0.2161 -11.4224 0.8432 22 6 -0.2140 -12.1970 -0.1005 23 6 -0.1893 -11.8400 -1.5579 24 6 0.7709 -10.6732 -1.7986 25 6 1.1561 -4.8056 0.5153 26 1 -0.4850 0.8400 -0.0041 27 1 0.3555 -2.3881 0.0113 28 1 1.6143 -3.8246 -2.1238 29 1 3.3626 -3.6678 -1.7454 30 1 2.3361 -6.1229 -2.2295 31 1 3.4931 -5.9074 -0.8804 32 1 1.0918 -8.0249 -2.1529 33 1 2.3301 -8.5310 -0.9786 34 1 1.8932 -10.1212 0.7061 35 1 0.4196 -9.3677 1.3542 36 1 0.1435 -11.7760 1.8611 37 1 -0.6154 -13.1600 0.1782 38 1 -1.1917 -11.5548 -1.8771 39 1 0.1396 -12.7038 -2.1359 40 1 0.6413 -10.2952 -2.8128 41 1 1.7983 -11.0091 -1.6581 42 1 1.3730 -5.0199 1.5617 43 1 0.1078 -4.5304 0.4006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969598138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:28 Heat of formation + Delta-G solvation = -40.908332 kcal Electronic energy + Delta-G solvation = -21516.797902 eV Core-core repulsion = 18367.812826 eV Total energy + Delta-G solvation = -3148.985076 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23846 -39.54751 -38.37075 -35.90602 -33.84370 -33.18216 -31.58308 -31.00507 -29.75655 -27.90208 -25.56509 -24.27280 -23.84175 -22.21728 -21.50109 -20.06650 -19.32779 -18.86779 -17.98874 -17.31091 -16.86031 -16.48558 -16.37433 -15.68945 -15.37278 -15.07191 -14.79056 -14.46570 -14.27754 -14.15524 -13.68772 -13.42671 -13.35709 -13.14644 -13.06208 -12.94319 -12.88048 -12.64203 -12.44070 -12.35237 -12.13318 -11.76378 -11.69109 -11.59966 -11.47105 -10.99888 -10.92309 -10.68826 -9.82887 -9.62955 -9.05002 -7.95020 -5.25663 1.44438 1.48936 1.52130 1.58055 1.67420 2.00155 2.57303 3.36273 3.52562 3.74237 3.78245 3.82038 3.91093 4.01324 4.15188 4.28502 4.29734 4.41224 4.44281 4.50752 4.53748 4.58829 4.67772 4.75315 4.79943 4.83078 4.87915 4.95000 5.04254 5.07512 5.12702 5.21559 5.25025 5.30684 5.40636 5.45801 5.53447 5.53629 5.81728 6.11324 6.25237 6.60811 7.20282 7.31393 8.03569 8.27248 9.28495 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050141 B = 0.002907 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.294327 B = 9629.531729 C = 9826.422619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.733 5.733 10 C 0.164 3.836 11 H 0.069 0.931 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.516 3.484 16 O -0.587 6.587 17 C -0.120 4.120 18 C -0.070 4.070 19 H 0.053 0.947 20 C -0.091 4.091 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.094 4.094 24 C -0.109 4.109 25 C 0.110 3.890 26 H 0.251 0.749 27 H 0.371 0.629 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 -24.056 -6.268 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.373 5.373 10 C 0.055 3.945 11 H 0.087 0.913 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.350 5.350 15 C 0.307 3.693 16 O -0.468 6.468 17 C -0.160 4.160 18 C -0.089 4.089 19 H 0.072 0.928 20 C -0.128 4.128 21 C -0.185 4.185 22 C -0.180 4.180 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.015 4.015 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.493 -24.100 -5.807 25.626 hybrid contribution -0.612 1.405 0.603 1.647 sum 5.881 -22.694 -5.203 24.014 Atomic orbital electron populations 1.69829 1.06865 1.26199 1.59432 1.25626 0.96318 1.01354 1.03658 0.85174 0.77101 0.78900 0.78344 1.19923 1.22655 1.20359 1.19605 0.91673 0.84690 1.41153 0.89787 1.42563 1.05317 1.00827 1.88551 1.21400 0.93715 0.83930 0.95473 0.91333 1.23364 1.02456 0.94549 0.98316 1.22554 0.90832 0.94943 0.93215 1.48668 1.39624 1.10071 1.36672 1.21277 0.80458 0.82906 0.84676 1.90659 1.33949 1.82724 1.39492 1.21799 1.03231 0.91308 0.99634 1.20933 0.99048 0.93577 0.95377 0.92811 1.20552 1.00425 0.94302 0.97485 1.22154 1.01063 0.96110 0.99201 1.22258 1.00504 0.99621 0.95616 1.20510 1.00155 0.98987 0.93383 1.21661 1.00105 0.94180 0.98713 1.21922 0.98856 0.86003 0.94696 0.94066 0.79743 0.92689 0.89219 0.87785 0.88711 0.86491 0.86186 0.90486 0.92518 0.88264 0.87179 0.91081 0.89257 0.89841 0.90528 0.92419 0.94199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -12.89 9.98 84.04 0.84 -12.05 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.73 -36.44 5.25 -317.32 -1.67 -38.11 16 10 C 0.16 6.19 3.59 46.18 0.17 6.35 16 11 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 12 C -0.15 -4.36 6.77 31.98 0.22 -4.15 16 13 C 0.11 2.27 6.69 86.85 0.58 2.85 16 14 N -0.62 -17.83 3.33 -811.81 -2.70 -20.53 16 15 C 0.52 14.89 7.61 87.66 0.67 15.56 16 16 O -0.59 -22.28 14.42 -3.03 -0.04 -22.33 16 17 C -0.12 -2.15 4.18 29.85 0.12 -2.02 16 18 C -0.07 -1.37 1.87 -10.65 -0.02 -1.39 16 19 H 0.05 1.34 7.93 -2.39 -0.02 1.32 16 20 C -0.09 -1.99 5.05 29.66 0.15 -1.84 16 21 C -0.17 -3.34 9.80 27.04 0.27 -3.08 16 22 C -0.16 -2.72 9.80 27.04 0.27 -2.46 16 23 C -0.09 -1.27 6.12 29.65 0.18 -1.09 16 24 C -0.11 -1.44 5.31 30.73 0.16 -1.27 16 25 C 0.11 3.99 6.62 86.73 0.57 4.56 16 26 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 27 H 0.37 20.41 7.51 -92.71 -0.70 19.71 16 28 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.10 1.58 7.47 -2.39 -0.02 1.56 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.12 1.57 7.85 -2.38 -0.02 1.55 16 33 H 0.12 1.51 8.09 -2.39 -0.02 1.49 16 34 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 35 H 0.06 1.64 6.30 -2.39 -0.02 1.63 16 36 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.11 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.87 8.12 -2.38 -0.02 0.85 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.04 1.68 7.68 -2.39 -0.02 1.66 16 Total: -1.00 -70.27 342.22 2.82 -67.45 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.28 Total: 29.62 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 4.64 Total: -3.95 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -4.08 Total: -118.12 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.27 2.82 -67.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969598138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.543 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds