Wall clock time and date at job start Tue Mar 31 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47344 * 300.00219 * 3 2 1 6 6 H 1.48510 * 109.46975 * 60.00117 * 3 2 1 7 7 C 1.38812 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99883 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64643 * 31.85443 * 10 9 7 12 12 C 1.55161 * 110.71602 * 268.51730 * 10 9 7 13 13 C 1.55137 * 101.48526 * 205.97085 * 12 10 9 14 14 N 1.47423 * 104.71983 * 37.29517 * 13 12 10 15 15 C 1.34777 * 125.64829 * 155.82193 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.69258 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.41380 * 15 14 13 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 H 1.09005 * 109.63682 * 304.58182 * 18 17 15 20 20 C 1.53023 * 109.64236 * 64.99686 * 18 17 15 21 21 C 1.50068 * 110.14852 * 169.11982 * 20 18 17 22 22 C 1.29449 * 124.07339 * 342.87428 * 21 20 18 23 23 C 1.50063 * 124.07638 * 0.44469 * 22 21 20 24 24 C 1.53017 * 110.15556 * 342.90475 * 23 22 21 25 25 C 1.47019 * 108.70731 * 335.55081 * 14 13 12 26 26 H 0.97001 * 119.99788 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00049 * 359.97438 * 9 7 2 28 28 H 1.08994 * 111.00643 * 324.20865 * 12 10 9 29 29 H 1.08997 * 111.00702 * 88.06372 * 12 10 9 30 30 H 1.09007 * 110.49426 * 278.45664 * 13 12 10 31 31 H 1.08993 * 110.34231 * 156.05913 * 13 12 10 32 32 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 33 33 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 34 34 H 1.09003 * 109.36267 * 289.33467 * 20 18 17 35 35 H 1.09003 * 109.35651 * 48.91456 * 20 18 17 36 36 H 1.07998 * 117.96519 * 162.84384 * 21 20 18 37 37 H 1.08001 * 117.95565 * 180.46732 * 22 21 20 38 38 H 1.08992 * 109.36050 * 103.09904 * 23 22 21 39 39 H 1.08997 * 109.35310 * 222.82592 * 23 22 21 40 40 H 1.09003 * 109.62124 * 289.73048 * 24 23 22 41 41 H 1.08990 * 109.64520 * 169.10448 * 24 23 22 42 42 H 1.09003 * 109.88210 * 120.70469 * 25 14 13 43 43 H 1.08996 * 109.88947 * 241.87267 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 3.0003 -3.5566 0.5375 12 6 2.3013 -4.1501 -1.4524 13 6 2.4230 -5.6823 -1.2413 14 7 1.4369 -5.9952 -0.1911 15 6 0.8552 -7.1945 0.0080 16 8 0.0582 -7.3397 0.9106 17 6 1.1904 -8.3536 -0.8949 18 6 0.3945 -9.5858 -0.4598 19 1 0.5879 -9.7941 0.5925 20 6 -1.1003 -9.3325 -0.6676 21 6 -1.8694 -10.6100 -0.4995 22 6 -1.3349 -11.7885 -0.5361 23 6 0.1298 -12.0414 -0.7422 24 6 0.8053 -10.7926 -1.3129 25 6 1.1979 -4.7840 0.6073 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 -0.0016 28 1 1.4549 -3.9070 -2.0948 29 1 3.2265 -3.7384 -1.8554 30 1 3.4276 -5.9430 -0.9082 31 1 2.1780 -6.2122 -2.1617 32 1 0.9331 -8.0995 -1.9232 33 1 2.2570 -8.5685 -0.8297 34 1 -1.4481 -8.6024 0.0632 35 1 -1.2642 -8.9415 -1.6718 36 1 -2.9350 -10.5421 -0.3374 37 1 -1.9837 -12.6428 -0.4108 38 1 0.5902 -12.2967 0.2121 39 1 0.2588 -12.8698 -1.4387 40 1 0.4825 -10.6402 -2.3428 41 1 1.8879 -10.9138 -1.2791 42 1 0.1434 -4.5117 0.5612 43 1 1.4931 -4.9578 1.6421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969598141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:31 Heat of formation + Delta-G solvation = -22.638652 kcal Electronic energy + Delta-G solvation = -21537.354569 eV Core-core repulsion = 18389.161725 eV Total energy + Delta-G solvation = -3148.192844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.09405 -38.57011 -37.10395 -34.13696 -32.89797 -31.48942 -30.86893 -29.53126 -28.42208 -26.72773 -23.80583 -23.27230 -22.73115 -21.32692 -20.04123 -18.91932 -18.08192 -17.42009 -16.82970 -16.07797 -15.88782 -15.33113 -14.72423 -14.42771 -14.21513 -13.72900 -13.50435 -13.35186 -13.08676 -12.84737 -12.65138 -12.49340 -12.28899 -12.11249 -11.87830 -11.67302 -11.57778 -11.20658 -10.87541 -10.81831 -10.73469 -10.67585 -10.32703 -10.26368 -10.07805 -9.79031 -9.51328 -9.04744 -8.99400 -8.36949 -7.06558 -5.84111 -3.14827 2.20825 2.82342 3.18878 3.39337 3.45013 3.47352 4.48815 4.51040 4.53019 4.61861 4.85976 5.01076 5.04519 5.10777 5.22968 5.29796 5.30710 5.38355 5.47450 5.54694 5.55833 5.57058 5.62564 5.66927 5.69834 5.77490 5.83747 5.95994 6.04528 6.12793 6.20390 6.26331 6.31109 6.37298 6.55732 6.57833 6.61423 6.87706 6.89012 7.63596 7.77508 8.32891 8.38102 9.44752 9.99174 10.33766 11.38126 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045694 B = 0.002975 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.618998 B = 9409.337815 C = 9741.738151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.171 3.829 11 H 0.066 0.934 12 C -0.155 4.155 13 C 0.098 3.902 14 N -0.614 5.614 15 C 0.523 3.477 16 O -0.544 6.544 17 C -0.132 4.132 18 C -0.070 4.070 19 H 0.080 0.920 20 C -0.095 4.095 21 C -0.142 4.142 22 C -0.171 4.171 23 C -0.088 4.088 24 C -0.116 4.116 25 C 0.099 3.901 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -22.024 -4.609 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.059 3.941 11 H 0.084 0.916 12 C -0.196 4.196 13 C -0.025 4.025 14 N -0.349 5.349 15 C 0.312 3.688 16 O -0.422 6.422 17 C -0.171 4.171 18 C -0.089 4.089 19 H 0.098 0.902 20 C -0.132 4.132 21 C -0.160 4.160 22 C -0.189 4.189 23 C -0.125 4.125 24 C -0.153 4.153 25 C -0.024 4.024 26 H 0.066 0.934 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.823 -21.998 -4.091 22.553 hybrid contribution 0.072 0.965 -0.111 0.974 sum 2.896 -21.033 -4.203 21.643 Atomic orbital electron populations 1.69678 1.05171 1.25785 1.57081 1.24785 0.95532 0.97851 1.02559 0.86099 0.78766 0.83934 0.77232 1.20478 1.21803 1.21785 1.19269 0.91076 0.83820 1.43412 0.90897 1.42382 1.05829 0.99415 1.87963 1.21193 0.94584 0.85734 0.92542 0.91584 1.23605 1.02712 0.91739 1.01576 1.22436 0.91795 0.97962 0.90314 1.48551 1.43182 1.09973 1.33148 1.20325 0.80528 0.82700 0.85266 1.90662 1.34757 1.83203 1.33548 1.21737 1.02003 0.93515 0.99890 1.20957 0.94747 0.92644 1.00561 0.90163 1.20668 0.93806 0.96231 1.02471 1.22131 0.99645 0.94534 0.99687 1.21983 0.96627 0.97223 1.03037 1.20401 0.93205 0.97855 1.01021 1.21678 0.99941 0.94318 0.99411 1.22332 1.01289 0.84105 0.94701 0.93387 0.77948 0.90655 0.90592 0.91664 0.91344 0.89052 0.89059 0.88837 0.91395 0.88222 0.88378 0.91075 0.91332 0.91682 0.91621 0.91213 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -17.38 5.22 -51.65 -0.27 -17.65 16 10 C 0.17 3.25 3.61 -66.09 -0.24 3.01 16 11 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 12 C -0.15 -2.45 6.78 -24.46 -0.17 -2.62 16 13 C 0.10 1.23 6.71 -2.41 -0.02 1.21 16 14 N -0.61 -9.31 3.32 -170.38 -0.57 -9.87 16 15 C 0.52 7.81 7.60 -10.98 -0.08 7.72 16 16 O -0.54 -9.99 14.36 5.55 0.08 -9.91 16 17 C -0.13 -1.38 4.18 -27.88 -0.12 -1.50 16 18 C -0.07 -0.75 1.88 -90.40 -0.17 -0.92 16 19 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 20 C -0.10 -1.11 5.03 -28.18 -0.14 -1.25 16 21 C -0.14 -1.51 9.80 -35.90 -0.35 -1.86 16 22 C -0.17 -1.61 9.80 -35.90 -0.35 -1.96 16 23 C -0.09 -0.72 6.12 -28.18 -0.17 -0.89 16 24 C -0.12 -0.96 5.31 -26.52 -0.14 -1.10 16 25 C 0.10 1.77 6.62 -3.06 -0.02 1.75 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.39 10.13 7.56 -40.82 -0.31 9.82 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.07 0.70 7.47 -51.93 -0.39 0.31 16 32 H 0.09 0.84 7.81 -51.92 -0.41 0.43 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.35 6.22 -51.93 -0.32 1.02 16 35 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -30.84 342.16 -9.39 -40.23 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.27 Total: 7.64 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.22 Total: -5.51 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.84 -9.39 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969598141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.591 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds