Wall clock time and date at job start Tue Mar 31 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48499 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47344 * 300.00219 * 3 2 1 6 6 H 1.48510 * 109.46975 * 60.00117 * 3 2 1 7 7 C 1.38812 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99883 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64643 * 31.85443 * 10 9 7 12 12 C 1.55161 * 110.71602 * 268.51730 * 10 9 7 13 13 C 1.55137 * 101.48526 * 205.97085 * 12 10 9 14 14 N 1.47423 * 104.71983 * 37.29517 * 13 12 10 15 15 C 1.34777 * 125.64829 * 155.82193 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.69258 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.41380 * 15 14 13 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 H 1.09005 * 109.63682 * 304.58182 * 18 17 15 20 20 C 1.53023 * 109.64236 * 64.99686 * 18 17 15 21 21 C 1.50068 * 110.14852 * 169.11982 * 20 18 17 22 22 C 1.29449 * 124.07339 * 342.87428 * 21 20 18 23 23 C 1.50063 * 124.07638 * 0.44469 * 22 21 20 24 24 C 1.53017 * 110.15556 * 342.90475 * 23 22 21 25 25 C 1.47019 * 108.70731 * 335.55081 * 14 13 12 26 26 H 0.97001 * 119.99788 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00049 * 359.97438 * 9 7 2 28 28 H 1.08994 * 111.00643 * 324.20865 * 12 10 9 29 29 H 1.08997 * 111.00702 * 88.06372 * 12 10 9 30 30 H 1.09007 * 110.49426 * 278.45664 * 13 12 10 31 31 H 1.08993 * 110.34231 * 156.05913 * 13 12 10 32 32 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 33 33 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 34 34 H 1.09003 * 109.36267 * 289.33467 * 20 18 17 35 35 H 1.09003 * 109.35651 * 48.91456 * 20 18 17 36 36 H 1.07998 * 117.96519 * 162.84384 * 21 20 18 37 37 H 1.08001 * 117.95565 * 180.46732 * 22 21 20 38 38 H 1.08992 * 109.36050 * 103.09904 * 23 22 21 39 39 H 1.08997 * 109.35310 * 222.82592 * 23 22 21 40 40 H 1.09003 * 109.62124 * 289.73048 * 24 23 22 41 41 H 1.08990 * 109.64520 * 169.10448 * 24 23 22 42 42 H 1.09003 * 109.88210 * 120.70469 * 25 14 13 43 43 H 1.08996 * 109.88947 * 241.87267 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 3.0003 -3.5566 0.5375 12 6 2.3013 -4.1501 -1.4524 13 6 2.4230 -5.6823 -1.2413 14 7 1.4369 -5.9952 -0.1911 15 6 0.8552 -7.1945 0.0080 16 8 0.0582 -7.3397 0.9106 17 6 1.1904 -8.3536 -0.8949 18 6 0.3945 -9.5858 -0.4598 19 1 0.5879 -9.7941 0.5925 20 6 -1.1003 -9.3325 -0.6676 21 6 -1.8694 -10.6100 -0.4995 22 6 -1.3349 -11.7885 -0.5361 23 6 0.1298 -12.0414 -0.7422 24 6 0.8053 -10.7926 -1.3129 25 6 1.1979 -4.7840 0.6073 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 -0.0016 28 1 1.4549 -3.9070 -2.0948 29 1 3.2265 -3.7384 -1.8554 30 1 3.4276 -5.9430 -0.9082 31 1 2.1780 -6.2122 -2.1617 32 1 0.9331 -8.0995 -1.9232 33 1 2.2570 -8.5685 -0.8297 34 1 -1.4481 -8.6024 0.0632 35 1 -1.2642 -8.9415 -1.6718 36 1 -2.9350 -10.5421 -0.3374 37 1 -1.9837 -12.6428 -0.4108 38 1 0.5902 -12.2967 0.2121 39 1 0.2588 -12.8698 -1.4387 40 1 0.4825 -10.6402 -2.3428 41 1 1.8879 -10.9138 -1.2791 42 1 0.1434 -4.5117 0.5612 43 1 1.4931 -4.9578 1.6421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969598141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:30 Heat of formation + Delta-G solvation = -41.034326 kcal Electronic energy + Delta-G solvation = -21538.152265 eV Core-core repulsion = 18389.161725 eV Total energy + Delta-G solvation = -3148.990540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23663 -39.54481 -38.36439 -35.91103 -33.84368 -33.18368 -31.58584 -31.00054 -29.73949 -27.90346 -25.57867 -24.26762 -23.83519 -22.21779 -21.51702 -20.05644 -19.35821 -18.86544 -17.98255 -17.29705 -16.87036 -16.47692 -16.39706 -15.64563 -15.34519 -15.15942 -14.81573 -14.51807 -14.20970 -13.99890 -13.72677 -13.55541 -13.26292 -13.13932 -13.05714 -13.00860 -12.88095 -12.69524 -12.43264 -12.32907 -12.08318 -11.74351 -11.69233 -11.61710 -11.46382 -10.99877 -10.95776 -10.67406 -9.83583 -9.62673 -9.05434 -7.95757 -5.26258 1.43566 1.48828 1.49758 1.59719 1.67554 2.00819 2.56765 3.35897 3.53295 3.74259 3.78096 3.83533 3.88474 4.03213 4.15891 4.27931 4.29363 4.42479 4.43831 4.50409 4.53570 4.57747 4.68357 4.75230 4.79602 4.83593 4.88193 4.95774 5.02369 5.07960 5.13654 5.22113 5.25023 5.30710 5.40503 5.45695 5.53391 5.53560 5.80981 6.10741 6.24870 6.61324 7.20705 7.30948 8.03006 8.26534 9.28087 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045694 B = 0.002975 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.618998 B = 9409.337815 C = 9741.738151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.298 1.298 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.732 5.732 10 C 0.164 3.836 11 H 0.072 0.928 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.617 5.617 15 C 0.515 3.485 16 O -0.588 6.588 17 C -0.121 4.121 18 C -0.069 4.069 19 H 0.058 0.942 20 C -0.093 4.093 21 C -0.169 4.169 22 C -0.160 4.160 23 C -0.093 4.093 24 C -0.109 4.109 25 C 0.108 3.892 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -24.218 -6.311 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.372 5.372 10 C 0.055 3.945 11 H 0.090 0.910 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.350 5.350 15 C 0.306 3.694 16 O -0.468 6.468 17 C -0.160 4.160 18 C -0.088 4.088 19 H 0.077 0.923 20 C -0.130 4.130 21 C -0.187 4.187 22 C -0.178 4.178 23 C -0.129 4.129 24 C -0.147 4.147 25 C -0.017 4.017 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.702 -24.245 -5.818 25.577 hybrid contribution -0.820 1.533 0.468 1.801 sum 4.882 -22.712 -5.350 23.839 Atomic orbital electron populations 1.69847 1.06856 1.26032 1.59575 1.25625 0.96332 1.01347 1.03723 0.85041 0.78461 0.79627 0.76417 1.18456 1.22186 1.22499 1.19696 0.91689 0.84679 1.40852 0.89732 1.42581 1.05345 1.00854 1.88373 1.21411 0.94130 0.83956 0.95019 0.91010 1.23405 1.02517 0.94485 0.98281 1.22602 0.92548 0.95385 0.91024 1.48667 1.43877 1.09146 1.33358 1.21288 0.79449 0.83382 0.85246 1.90657 1.36587 1.83910 1.35678 1.21802 1.03789 0.90943 0.99457 1.20931 0.93793 0.94054 0.99985 0.92314 1.20577 0.95143 0.95924 1.01399 1.22136 0.99723 0.94763 1.02079 1.22275 0.97868 0.96975 1.00695 1.20513 0.91974 0.98625 1.01830 1.21662 1.01270 0.92705 0.99019 1.21982 0.99210 0.85487 0.94986 0.94086 0.79738 0.92654 0.89175 0.88640 0.87830 0.86831 0.85837 0.92604 0.91110 0.88529 0.87149 0.90699 0.89235 0.90910 0.89419 0.94285 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.24 -12.76 9.96 84.03 0.84 -11.92 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.73 -36.32 5.22 -317.32 -1.66 -37.98 16 10 C 0.16 6.17 3.61 46.18 0.17 6.34 16 11 H 0.07 2.62 8.09 -2.39 -0.02 2.60 16 12 C -0.15 -4.33 6.78 32.07 0.22 -4.11 16 13 C 0.11 2.25 6.71 86.94 0.58 2.83 16 14 N -0.62 -17.83 3.32 -811.34 -2.70 -20.53 16 15 C 0.52 14.89 7.60 87.66 0.67 15.56 16 16 O -0.59 -22.32 14.36 -3.04 -0.04 -22.37 16 17 C -0.12 -2.15 4.18 29.85 0.12 -2.02 16 18 C -0.07 -1.34 1.88 -10.65 -0.02 -1.36 16 19 H 0.06 1.40 7.96 -2.38 -0.02 1.38 16 20 C -0.09 -2.20 5.03 29.66 0.15 -2.05 16 21 C -0.17 -3.56 9.80 27.03 0.27 -3.30 16 22 C -0.16 -2.75 9.80 27.03 0.27 -2.48 16 23 C -0.09 -1.23 6.12 29.65 0.18 -1.04 16 24 C -0.11 -1.41 5.31 30.73 0.16 -1.25 16 25 C 0.11 3.93 6.62 86.73 0.57 4.51 16 26 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 27 H 0.37 20.38 7.56 -92.71 -0.70 19.68 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.10 1.57 7.47 -2.39 -0.02 1.55 16 32 H 0.11 1.59 7.81 -2.38 -0.02 1.57 16 33 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.72 6.22 -2.39 -0.01 1.71 16 35 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.11 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.04 1.65 7.72 -2.39 -0.02 1.63 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -70.49 342.16 2.83 -67.67 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.28 Total: 29.51 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 4.64 Total: -4.26 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -4.07 Total: -117.94 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.37 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.49 2.83 -67.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969598141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.631 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds